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SBSStateUpdaterParticleSystem Class Reference

This class is the base class for state updaters of particle systems simulators.

Debugging

virtual void print (unsigned int offset=0) const override
 Prints debugging information.
 
 SBSStateUpdaterParticleSystem (SBMDynamicalModelParticleSystem *dynamicalModel, SBMInteractionModelParticleSystem *interactionModel)
 

State updater attributes

SBPointer< SBMDynamicalModelParticleSystem > * dynamicalModel
 
SBPointer< SBMInteractionModelParticleSystem > * interactionModel
 

Constructors and destructors

virtual ~SBSStateUpdaterParticleSystem ()
 

Topology

virtual SBSStateUpdaterParticleSystemclone () override
 Returns a copy of the node and its descendants.
 

Identity

virtual SBDDataGraphNode::Type getType () const override
 Returns the node type (returns SBNode::StateUpdater)
 
virtual SBDDataGraphNode::Type getStateUpdaterType () const override
 Returns the state updater type (SBNode::StateUpdaterParticleSystem)
 

Models

virtual SBMDynamicalModelParticleSystemgetDynamicalModel () const override
 
virtual SBMInteractionModelParticleSystemgetInteractionModel () const override
 

Simulation

virtual void updateState () override
 Updates the state of the particle system.
 

Event handling <br>

virtual void onDynamicalEvent (SBDynamicalEvent *dynamicalEvent) override
 
virtual void onInteractionEvent (SBInteractionEvent *interactionEvent) override
 

Additional Inherited Members

- Public Types inherited from SBDDataGraphNode
enum  Type {
  Undefined ,
  StructuralModel ,
  StructuralModelNode ,
  StructuralModelConformation ,
  Conformation ,
  StructuralModelPath ,
  Path ,
  StructuralModelNodeGroup ,
  StructuralGroup ,
  StructuralModelNodeRoot ,
  Root ,
  StructuralModelNodeAtom ,
  Atom ,
  StructuralModelNodeBond ,
  Bond ,
  StructuralModelNodeHydrogenBond ,
  HydrogenBond ,
  StructuralModelNodeHydrogenBondGroup ,
  HydrogenBondGroup ,
  StructuralModelNodeResidue ,
  Residue ,
  StructuralModelNodeSegment ,
  Segment ,
  StructuralModelNodeChain ,
  Chain ,
  StructuralModelNodeMolecule ,
  Molecule ,
  StructuralModelNodeBackbone ,
  Backbone ,
  StructuralModelNodeSideChain ,
  SideChain ,
  VisualModel ,
  VisualModelMesh ,
  Mesh ,
  DynamicalModel ,
  DynamicalModelParticleSystem ,
  ParticleSystem ,
  DynamicalModelRigidBodySystem ,
  RigidBodySystem ,
  DynamicalModelArticulatedBodySystem ,
  ArticulatedBodySystem ,
  DynamicalModelNode ,
  DynamicalNode ,
  DynamicalModelNodeGroup ,
  DynamicalGroup ,
  DynamicalModelNodeRoot ,
  DynamicalRoot ,
  DynamicalModelNodeParticle ,
  Particle ,
  DynamicalModelNodeRigidBody ,
  RigidBody ,
  DynamicalModelNodeArticulatedBody ,
  ArticulatedBody ,
  InteractionModel ,
  InteractionModelParticleSystem ,
  InteractionModelRigidBodySystem ,
  InteractionModelArticulatedBodySystem ,
  PropertyModel ,
  PropertyModelFunction ,
  Simulator ,
  SimulatorParticleSystem ,
  SimulatorRigidBodySystem ,
  SimulatorArticulatedBodySystem ,
  StateUpdater ,
  StateUpdaterParticleSystem ,
  StateUpdaterRigidBodySystem ,
  StateUpdaterArticulatedBodySystem ,
  Animation ,
  Camera ,
  Document ,
  DocumentManager ,
  File ,
  Folder ,
  Label ,
  Light ,
  Note ,
  Presentation ,
  RenderPreset ,
  DataGraphNodeGroup ,
  NodeGroup ,
  Controller ,
  ControllerNode ,
  Asset
}
 The type of the data graph node. More...
 
enum class  RenderingPass {
  Setup ,
  OpaqueGeometry ,
  SelectableGeometry ,
  ShadowingGeometry ,
  TransparentGeometry ,
  Interface ,
  Text
}
 The rendering pass. More...
 
- Public Member Functions inherited from SBSStateUpdater
virtual ~SBSStateUpdater ()
 
virtual bool isSerializable () const override
 Returns true when the class is serializable.
 
virtual void serialize (SBCSerializer *serializer, const SBNodeIndexer &nodeIndexer, const SBVersionNumber &sdkVersionNumber=SB_SDK_VERSION_NUMBER, const SBVersionNumber &classVersionNumber=SBVersionNumber(1, 0, 0)) const override
 Serializes the node.
 
virtual void unserialize (SBCSerializer *serializer, const SBNodeIndexer &nodeIndexer, const SBVersionNumber &sdkVersionNumber=SB_SDK_VERSION_NUMBER, const SBVersionNumber &classVersionNumber=SBVersionNumber(1, 0, 0)) override
 Unserializes the node.
 
virtual void expandBounds (SBIAPosition3 &bounds) const
 Expands the bounds to make sure the visual model fits inside them.
 
virtual void collectAmbientOcclusion (const SBPosition3 &boxOrigin, const SBPosition3 &boxSize, unsigned int nCellsX, unsigned int nCellsY, unsigned int nCellsZ, float *ambientOcclusionData)
 To collect ambient occlusion data.
 
void connectStateUpdaterSignalToSlot (SBCReferenceTarget *referenceTarget, void(SBCReferenceTarget::*functionPointer)(SBStateUpdaterEvent *), SBCReferenceTarget *nextReferenceTarget=0, void(SBCReferenceTarget::*nextFunctionPointer)(SBStateUpdaterEvent *)=0)
 Connects the state updater signal to a slot.
 
bool stateUpdaterSignalIsConnectedToSlot (SBCReferenceTarget *referenceTarget, void(SBCReferenceTarget::*functionPointer)(SBStateUpdaterEvent *)) const
 Returns true if and only if the state updater signal is connected to the slot.
 
void disconnectStateUpdaterSignalFromSlot (SBCReferenceTarget *referenceTarget, void(SBCReferenceTarget::*functionPointer)(SBStateUpdaterEvent *))
 Disconnects the state updater signal from a slot.
 
const SBQuantity::timegetStepSize () const
 
void setStepSize (const SBQuantity::time &step)
 
const unsigned int & getNumberOfSteps () const
 
void setNumberOfSteps (const unsigned int &nSteps)
 
virtual void changed ()
 Emits the StateUpdaterChanged event.
 
- Public Member Functions inherited from SBDDataGraphNode
SBDDataGraphNodegetParent () const
 Returns the parent of the node.
 
SBDDataGraphNodegetThisNode () const
 Returns the pointer to this node.
 
SBDDataGraphNodegetNextNode () const
 Returns the pointer to the next node in the children of the node's parent.
 
SBDDataGraphNodegetPreviousNode () const
 Returns the pointer to the previous node in the children of the node's parent.
 
SBDDataGraphNodegetNextNode (SBDDataGraphNode::Type nodeType) const
 Returns the pointer to the next node with type nodeType in the children of the node's parent.
 
SBDDataGraphNodegetPreviousNode (SBDDataGraphNode::Type nodeType) const
 Returns the pointer to the previous node with type nodeType in the children of the node's parent.
 
SBDDocumentgetDocument () const
 Returns the document the node belongs to.
 
virtual bool canAddChild (const SBDDataGraphNode *node, const SBDDataGraphNode *nextNode=nullptr) const
 Returns whether this node can add node as a child.
 
virtual bool canAddChildType (SBDDataGraphNode::Type nodeType) const
 Returns whether this node can add a node with type nodeType as a child.
 
virtual bool canHaveDescendantType (SBDDataGraphNode::Type nodeType) const
 Returns whether this node can have a node with type nodeType as a descendant.
 
virtual bool addChild (SBDDataGraphNode *node, SBDDataGraphNode *nextNode=nullptr)
 Adds a child to the node.
 
virtual bool removeChild (SBDDataGraphNode *node)
 Removes a child from the node.
 
bool hasOneOf (const SBNodeIndexer &nodeIndexer) const
 Returns true if and only if this node is one of the nodes of the nodeIndexer, or is the ancestor of one of them, or is a group that stores one of them.
 
bool descendsFrom (const SBDDataGraphNode *node) const
 Returns true if and only if this node is node, or descends from it.
 
bool descendsFrom (const SBNodeIndexer &nodeIndexer) const
 Returns true if and only if this node is one of the nodes of the nodeIndexer, or descends from one of them.
 
bool descendsFrom (SBPointerIndexer< SBDDataGraphNode > *nodePointerIndexer) const
 Returns true if and only if this node is one of the nodes of the nodePointerIndexer, or descends from one of them.
 
bool isIn (const SBDDataGraphNode *node) const
 Returns true if and only if this node is node, or descends from it, or belongs to a group stored in node.
 
bool isIn (const SBNodeIndexer &nodeIndexer) const
 Returns true if and only if this node is one of the nodes of the nodeIndexer, or descends from one of them, or belongs to a group stored in one of the nodes of the nodeIndexer.
 
bool isIn (SBPointerIndexer< SBDDataGraphNode > *nodePointerIndexer) const
 Returns true if and only if this node is one of the nodes of the nodePointerIndexer, or descends from one of them, or belongs to a group stored in of the nodes of the nodePointerIndexer.
 
bool isOneOf (const SBNodeIndexer &nodeIndexer) const
 Returns true if and only if this node is one of the nodes of the nodeIndexer.
 
bool isOneOf (SBPointerIndexer< SBDDataGraphNode > *nodePointerIndexer) const
 Returns true if and only if this node is one of the nodes of the nodePointerIndexer.
 
SBDDataGraphNodegetRoot () const
 Returns the root of the hierarchy the node belongs to.
 
unsigned int getNodeIndex () const
 Returns the node index (unique in the whole data graph, but non-persistent)
 
std::string getTypeString (bool humanReadable=false) const
 Returns a string describing the type of the data graph node.
 
virtual std::string const & getName () const
 Returns the name of the node.
 
virtual void setName (const std::string &name)
 Sets the name of the node.
 
bool isType (Type type) const
 Returns true when the type of the node corresponds to type.
 
bool isModel () const
 Returns true when the node is a model.
 
bool isAtom () const
 Returns true when the node is an atom.
 
bool isBond () const
 Returns true when the node is a bond.
 
bool isStructuralNode () const
 Returns true when the node is a structural node.
 
bool isStructuralModel () const
 Returns true when the node is a structural model.
 
bool isVisualModel () const
 Returns true when the node is a visual model.
 
bool isDynamicalModel () const
 Returns true when the node is a dynamical model.
 
bool isInteractionModel () const
 Returns true when the node is a interaction model.
 
bool isPropertyModel () const
 Returns true when the node is a property model.
 
bool isMesh () const
 Returns true when the node is a mesh.
 
bool isLight () const
 Returns true when the node is a light.
 
bool isSimulator () const
 Returns true when the node is a simulator.
 
bool isBallAndStick () const
 Returns true when the node is the default ball-and-stick visual model.
 
bool isLicorice () const
 Returns true when the node is the default licorice visual model.
 
bool isVanDerWaals () const
 Returns true when the node is the default van der Waals visual model.
 
bool isCartoon () const
 Returns true when the node is the default cartoon visual model.
 
bool isRibbon () const
 Returns true when the node is the default ribbon visual model.
 
bool isTube () const
 Returns true when the node is the default tube visual model.
 
bool isGaussianSurface () const
 Returns true when the node is the default Gaussian surface visual model.
 
bool isSolventAccessibleSurface () const
 Returns true when the node is the default solvent accessible surface visual model.
 
bool isSolventExcludedSurface () const
 Returns true when the node is the default solvent excluded surface visual model.
 
virtual bool isLocked () const
 Returns whether the node is locked.
 
virtual bool getLockedFlag () const
 Returns the locked flag.
 
virtual void setLockedFlag (bool flag)
 Sets the locked flag.
 
bool isCreated () const
 Returns true if and only if the node is created.
 
void create ()
 Creates the node.
 
bool isErased () const
 Returns true if and only if the node is erased.
 
void erase ()
 Erases the node.
 
virtual unsigned int getFlags () const
 Returns the flags.
 
virtual unsigned int getInheritedFlags () const
 Returns the inherited flags.
 
bool isSelected () const
 Returns whether the node is selected.
 
bool getSelected () const
 Returns whether the node is selected.
 
bool getSelectionFlag () const
 Returns the selection flag.
 
void setSelectionFlag (bool flag)
 Sets the selection flag.
 
bool isVisible () const
 Returns whether the node is visible.
 
bool getVisible () const
 Returns whether the node is visible.
 
bool getVisibilityFlag () const
 Returns the visibility flag.
 
void setVisibilityFlag (bool flag)
 Sets the visibility flag.
 
bool isHighlighted () const
 Returns whether the node is highlighted.
 
bool getHighlightingFlag () const
 Returns the highlighting flag.
 
void setHighlightingFlag (bool flag)
 Sets the highlighting flag.
 
virtual void display (RenderingPass renderingPass)
 Displays the node.
 
virtual void display ()
 Displays the node (deprecated)
 
virtual void displayForShadow ()
 Displays the node for shadowing purposes (deprecated)
 
virtual void displayForSelection ()
 Displays the node for selection purposes (deprecated)
 
virtual unsigned int getOpacity () const
 Returns the opacity.
 
virtual void setOpacity (unsigned int opacity)
 Sets the opacity.
 
virtual bool hasOpacityRange () const
 Returns whether the node has the opacity range.
 
virtual unsigned int getDefaultOpacity () const
 Returns the default opacity.
 
virtual unsigned int getMinimumOpacity () const
 Returns the minimum opacity.
 
virtual unsigned int getMaximumOpacity () const
 Returns the maximum opacity.
 
virtual unsigned int getOpacitySingleStep () const
 Returns the opacity single step.
 
virtual std::string getOpacitySuffix () const
 Returns the opacity suffix.
 
virtual unsigned int getTransparency () const
 Returns the transparency.
 
virtual void setTransparency (unsigned int transparency)
 Sets the transparency.
 
virtual bool hasTransparencyRange () const
 Returns whether the node has the transparency range.
 
virtual unsigned int getDefaultTransparency () const
 Returns the default transparency.
 
virtual unsigned int getMinimumTransparency () const
 Returns the minimum transparency.
 
virtual unsigned int getMaximumTransparency () const
 Returns the maximum transparency.
 
virtual unsigned int getTransparencySingleStep () const
 Returns the transparency single step.
 
virtual std::string getTransparencySuffix () const
 Returns the transparency suffix.
 
float getInheritedOpacity () const
 Returns the cumulative opacity, when taking into account the ascendants.
 
float getInheritedTransparency () const
 Returns the cumulative transparency, when taking into account the ascendants.
 
bool canAddMaterial () const
 Returns whether can add a material to the node based on its type.
 
bool addMaterial (SBDDataGraphNodeMaterial *material)
 Adds a material.
 
bool removeMaterial ()
 Removes the material.
 
void removeMaterialsFromDescendants ()
 Removes materials from all nodes that descend from this node, but it does not remove the material from the node itself.
 
bool hasMaterial () const
 Returns whether the node has a material (by itself, or inherited)
 
bool ownsMaterial () const
 Returns whether the node owns a material.
 
SBDDataGraphNodeMaterialgetMaterial () const
 Returns the material.
 
SBDDataGraphNodegetMaterialOwner () const
 Returns the node whose material is inherited.
 
void connectBaseSignalToSlot (SBCReferenceTarget *referenceTarget, void(SBCReferenceTarget::*functionPointer)(SBBaseEvent *), SBCReferenceTarget *nextReferenceTarget=0, void(SBCReferenceTarget::*nextFunctionPointer)(SBBaseEvent *)=0)
 Connects the base signal to a slot.
 
bool baseSignalIsConnectedToSlot (SBCReferenceTarget *referenceTarget, void(SBCReferenceTarget::*functionPointer)(SBBaseEvent *)) const
 Returns true when the base signal is connected to a slot.
 
void disconnectBaseSignalFromSlot (SBCReferenceTarget *referenceTarget, void(SBCReferenceTarget::*functionPointer)(SBBaseEvent *))
 Disconnects the base signal from a slot.
 
virtual void getNodes (SBNodeIndexer &nodeIndexer, SBDDataGraphNode::Type nodeType, bool selectedNodesOnly=false, const SBNodePredicate &visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const
 Collects nodes into nodeIndexer, based on a nodeType, a selection status and a visitPredicate, with or without dependencies.
 
virtual void getNodes (SBNodeIndexer &nodeIndexer, const SBNodePredicate &selectionPredicate=SBDDataGraphNode::All(), const SBNodePredicate &visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const
 Collects nodes into nodeIndexer, based on a selectionPredicate and a visitPredicate, with or without dependencies.
 
virtual bool hasNode (SBDDataGraphNode::Type nodeType, bool selectedNodesOnly=false, const SBNodePredicate &visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const
 Returns whether the node has nodes based on a nodeType, a selection status and a visitPredicate, with or without dependencies.
 
virtual bool hasNode (const SBNodePredicate &selectionPredicate=SBDDataGraphNode::All(), const SBNodePredicate &visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const
 Returns whether the node has nodes based on a selectionPredicate and a visitPredicate, with or without dependencies.
 
unsigned int countNodes (SBDDataGraphNode::Type nodeType, bool selectedNodesOnly=false, const SBNodePredicate &visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const
 Counts nodes based on a nodeType, a selection status and a visitPredicate, with or without dependencies.
 
unsigned int countNodes (const SBNodePredicate &selectionPredicate=SBDDataGraphNode::All(), const SBNodePredicate &visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const
 Counts nodes based on a selectionPredicate and a visitPredicate, with or without dependencies.
 
virtual void forEachNodeDepthFirst (void(*action)(SBDDataGraphNode *node))
 Performs an action on each node.
 
virtual void forEachNodeDepthFirst (SBCClass *object, void(SBCClass::*action)(SBDDataGraphNode *node))
 Performs an action on each node.
 
virtual std::string getHierarchyString (const std::string &separator=" / ", bool includeNodeType=false) const
 Returns a string with hierarchical information on the node and its parents names.
 
virtual unsigned int getNumberOfChains ()
 Returns the number of chains.
 
virtual unsigned int getNumberOfMolecules ()
 Returns the number of molecules.
 
virtual unsigned int getNumberOfResidues ()
 Returns the number of residues.
 
virtual unsigned int getNumberOfSegments ()
 Returns the number of segments.
 
virtual unsigned int getNumberOfStructuralGroups ()
 Returns the number of structural groups.
 
virtual unsigned int getNumberOfStructuralModels ()
 Returns the number of structural models.
 
virtual unsigned int getNumberOfAtoms ()
 Returns the number of atoms.
 
virtual unsigned int getNumberOfCarbons ()
 Returns the number of carbons.
 
virtual unsigned int getNumberOfHydrogens ()
 Returns the number of hydrogens.
 
virtual unsigned int getNumberOfNitrogens ()
 Returns the number of nitrogens.
 
virtual unsigned int getNumberOfOxygens ()
 Returns the number of oxygens.
 
virtual unsigned int getNumberOfSulfurs ()
 Returns the number of sulfurs.
 
virtual unsigned int getNumberOfCoarseGrainedAtoms ()
 Returns the number of coarse-grained atoms.
 
virtual unsigned int getNumberOfOtherAtoms ()
 Returns the number of other atoms.
 
virtual int getSumOfFormalCharges ()
 Returns the sum of formal charges.
 
virtual float getSumOfPartialCharges ()
 Returns the sum of partial charges.
 
virtual SBQuantity::mass getMolecularWeight ()
 Returns the molecular weight.
 
 SB_DECLARE_DATA (SBDDataGraphNode)
 
- Public Member Functions inherited from SBCReferenceTarget
unsigned int getMemoryFootprint () const
 
void printReferencesToOwners () const
 
 SBCReferenceTarget ()
 
virtual ~SBCReferenceTarget ()
 
- Static Public Member Functions inherited from SBDDataGraphNode
static void clone (const SBNodeIndexer &sourceNodeIndexer, SBNodeIndexer &destinationNodeIndexer)
 Clones the nodes in sourceNodeIndexer (treated as a whole) and places the clones in destinationNodeIndexer.
 
static SBDDataGraphNodegetNode (unsigned int nodeIndex)
 Returns the unique node corresponding to the node index nodeIndex.
 
static std::string getTypeString (Type type, bool humanReadable=false)
 Returns a string describing the type of the data graph node.
 
static bool canAddMaterial (SBDDataGraphNode::Type nodeType)
 Returns whether can add a material to a node of type nodeType.
 
static void forEachNodeInSelection (SBNodeIndexer &nodeIndexer, void(*action)(SBDDataGraphNode *node))
 Performs an action for each node in a selection.
 
static void forEachNodeInSelection (SBNodeIndexer &nodeIndexer, SBCClass *object, void(SBCClass::*action)(SBDDataGraphNode *node))
 Performs an action for each node in a selection.
 
- Protected Member Functions inherited from SBSStateUpdater
virtual void emitStateUpdaterSignal (SBStateUpdaterEvent *event)
 Emits the visual signal.
 
 SBSStateUpdater ()
 
- Protected Member Functions inherited from SBDDataGraphNode
 SBDDataGraphNode ()
 Builds a data graph node.
 
 SBDDataGraphNode (SBDDataGraphNodeData *dataPointer)
 Builds a data graph node.
 
virtual ~SBDDataGraphNode ()
 Destroys the node.
 
- Protected Member Functions inherited from SBCReferenceTarget
void removeAllReferenceOwners ()
 
 SBCReferenceTarget (SBCReferenceTargetData *dataPointer)
 
- Protected Attributes inherited from SBSStateUpdater
SBSignal1< SBSStateUpdaterEvent * > * stateUpdaterSignal
 The visual signal.
 
- Protected Attributes inherited from SBCReferenceTarget
SBCReferenceTargetData * dataPointer
 

Member Function Documentation

◆ clone()

SBSStateUpdaterParticleSystem * SBSStateUpdaterParticleSystem::clone ( )
overridevirtual

Reimplemented from SBSStateUpdater.

◆ getDynamicalModel()

SBMDynamicalModelParticleSystem * SBSStateUpdaterParticleSystem::getDynamicalModel ( ) const
overridevirtual

Reimplemented from SBSStateUpdater.

◆ getInteractionModel()

SBMInteractionModelParticleSystem * SBSStateUpdaterParticleSystem::getInteractionModel ( ) const
overridevirtual

Reimplemented from SBSStateUpdater.

◆ getStateUpdaterType()

SBDDataGraphNode::Type SBSStateUpdaterParticleSystem::getStateUpdaterType ( ) const
overridevirtual

Reimplemented from SBSStateUpdater.

◆ getType()

SBDDataGraphNode::Type SBSStateUpdaterParticleSystem::getType ( ) const
overridevirtual

Reimplemented from SBSStateUpdater.

◆ onDynamicalEvent()

void SBSStateUpdaterParticleSystem::onDynamicalEvent ( SBDynamicalEvent dynamicalEvent)
overridevirtual

Reimplemented from SBSStateUpdater.

◆ onInteractionEvent()

void SBSStateUpdaterParticleSystem::onInteractionEvent ( SBInteractionEvent interactionEvent)
overridevirtual

Reimplemented from SBSStateUpdater.

◆ print()

void SBSStateUpdaterParticleSystem::print ( unsigned int  offset = 0) const
overridevirtual

Reimplemented from SBSStateUpdater.

◆ updateState()

void SBSStateUpdaterParticleSystem::updateState ( )
overridevirtual

Reimplemented from SBSStateUpdater.