StructuralModel

See also

SAMSON API: SBMStructuralModel

class samson.Modeling.StructuralModel.StructuralModel(self: samson.Modeling.StructuralModel.StructuralModel) → None

Bases: samson.Modeling.Model.Model

This class describes a structural model.

Constructs a structural model

class NodeType(self: samson.DataModel.DataGraph.Node.NodeType, arg0: int) → None

Bases: pybind11_builtins.pybind11_object

Members:

Undefined

StructuralModel

StructuralModelNode

StructuralModelConformation

Conformation

StructuralModelPath

Path

StructuralModelNodeGroup

StructuralGroup

StructuralModelNodeRoot

Root

StructuralModelNodeParticle

StructuralParticle

StructuralModelNodeAtom

Atom

StructuralModelNodePseudoAtom

PseudoAtom

StructuralModelNodeBond

Bond

StructuralModelNodeResidue

Residue

StructuralModelNodeSegment

Segment

StructuralModelNodeProtein

Protein

StructuralModelNodeChain

Chain

StructuralModelNodeMolecule

Molecule

StructuralModelNodeBackbone

Backbone

StructuralModelNodeSideChain

SideChain

VisualModel

DynamicalModel

DynamicalModelParticleSystem

ParticleSystem

DynamicalModelRigidBodySystem

RigidBodySystem

DynamicalModelArticulatedBodySystem

ArticulatedBodySystem

DynamicalModelNode

DynamicalNode

DynamicalModelNodeGroup

DynamicalGroup

DynamicalModelNodeRoot

DynamicalRoot

DynamicalModelNodeParticle

DynamicalParticle

DynamicalModelNodeRigidBody

RigidBody

DynamicalModelNodeArticulatedBody

ArticulatedBody

InteractionModel

InteractionModelParticleSystem

InteractionModelRigidBodySystem

InteractionModelArticulatedBodySystem

PropertyModel

PropertyModelFunction

Simulator

SimulatorParticleSystem

SimulatorRigidBodySystem

SimulatorArticulatedBodySystem

StateUpdater

StateUpdaterParticleSystem

StateUpdaterRigidBodySystem

StateUpdaterArticulatedBodySystem

DocumentManager

Document

Folder

Camera

Label

DataGraphNodeGroup

NodeGroup

Controller

ControllerNode

Asset

ArticulatedBody = NodeType.DynamicalModelNodeArticulatedBody

ArticulatedBodySystem = NodeType.DynamicalModelArticulatedBodySystem

Asset = NodeType.Asset

Atom = NodeType.StructuralModelNodeAtom

Backbone = NodeType.StructuralModelNodeBackbone

Bond = NodeType.StructuralModelNodeBond

Camera = NodeType.Camera

Chain = NodeType.StructuralModelNodeChain

Conformation = NodeType.StructuralModelConformation

Controller = NodeType.Controller

ControllerNode = NodeType.ControllerNode

DataGraphNodeGroup = NodeType.DataGraphNodeGroup

Document = NodeType.Document

DocumentManager = NodeType.DocumentManager

DynamicalGroup = NodeType.DynamicalModelNodeGroup

DynamicalModel = NodeType.DynamicalModel

DynamicalModelArticulatedBodySystem = NodeType.DynamicalModelArticulatedBodySystem

DynamicalModelNode = NodeType.DynamicalModelNode

DynamicalModelNodeArticulatedBody = NodeType.DynamicalModelNodeArticulatedBody

DynamicalModelNodeGroup = NodeType.DynamicalModelNodeGroup

DynamicalModelNodeParticle = NodeType.DynamicalModelNodeParticle

DynamicalModelNodeRigidBody = NodeType.DynamicalModelNodeRigidBody

DynamicalModelNodeRoot = NodeType.DynamicalModelNodeRoot

DynamicalModelParticleSystem = NodeType.DynamicalModelParticleSystem

DynamicalModelRigidBodySystem = NodeType.DynamicalModelRigidBodySystem

DynamicalNode = NodeType.DynamicalModelNode

DynamicalParticle = NodeType.DynamicalModelNodeParticle

DynamicalRoot = NodeType.DynamicalModelNodeRoot

Folder = NodeType.Folder

InteractionModel = NodeType.InteractionModel

InteractionModelArticulatedBodySystem = NodeType.InteractionModelArticulatedBodySystem

InteractionModelParticleSystem = NodeType.InteractionModelParticleSystem

InteractionModelRigidBodySystem = NodeType.InteractionModelRigidBodySystem

Label = NodeType.Label

Molecule = NodeType.StructuralModelNodeMolecule

NodeGroup = NodeType.DataGraphNodeGroup

ParticleSystem = NodeType.DynamicalModelParticleSystem

Path = NodeType.StructuralModelPath

PropertyModel = NodeType.PropertyModel

PropertyModelFunction = NodeType.PropertyModelFunction

Protein = NodeType.StructuralModelNodeProtein

PseudoAtom = NodeType.StructuralModelNodePseudoAtom

Residue = NodeType.StructuralModelNodeResidue

RigidBody = NodeType.DynamicalModelNodeRigidBody

RigidBodySystem = NodeType.DynamicalModelRigidBodySystem

Root = NodeType.StructuralModelNodeRoot

Segment = NodeType.StructuralModelNodeSegment

SideChain = NodeType.StructuralModelNodeSideChain

Simulator = NodeType.Simulator

SimulatorArticulatedBodySystem = NodeType.SimulatorArticulatedBodySystem

SimulatorParticleSystem = NodeType.SimulatorParticleSystem

SimulatorRigidBodySystem = NodeType.SimulatorRigidBodySystem

StateUpdater = NodeType.StateUpdater

StateUpdaterArticulatedBodySystem = NodeType.StateUpdaterArticulatedBodySystem

StateUpdaterParticleSystem = NodeType.StateUpdaterParticleSystem

StateUpdaterRigidBodySystem = NodeType.StateUpdaterRigidBodySystem

StructuralGroup = NodeType.StructuralModelNodeGroup

StructuralModel = NodeType.StructuralModel

StructuralModelConformation = NodeType.StructuralModelConformation

StructuralModelNode = NodeType.StructuralModelNode

StructuralModelNodeAtom = NodeType.StructuralModelNodeAtom

StructuralModelNodeBackbone = NodeType.StructuralModelNodeBackbone

StructuralModelNodeBond = NodeType.StructuralModelNodeBond

StructuralModelNodeChain = NodeType.StructuralModelNodeChain

StructuralModelNodeGroup = NodeType.StructuralModelNodeGroup

StructuralModelNodeMolecule = NodeType.StructuralModelNodeMolecule

StructuralModelNodeParticle = NodeType.StructuralModelNodeParticle

StructuralModelNodeProtein = NodeType.StructuralModelNodeProtein

StructuralModelNodePseudoAtom = NodeType.StructuralModelNodePseudoAtom

StructuralModelNodeResidue = NodeType.StructuralModelNodeResidue

StructuralModelNodeRoot = NodeType.StructuralModelNodeRoot

StructuralModelNodeSegment = NodeType.StructuralModelNodeSegment

StructuralModelNodeSideChain = NodeType.StructuralModelNodeSideChain

StructuralModelPath = NodeType.StructuralModelPath

StructuralParticle = NodeType.StructuralModelNodeParticle

Undefined = NodeType.Undefined

VisualModel = NodeType.VisualModel

name

(self – handle) -> str

addChild(self: samson.Modeling.StructuralModel.StructuralModel, node: samson.DataModel.DataGraph.Node, nextNode: samson.DataModel.DataGraph.Node = None) → bool

Adds a child to the node

canAddChild(self: samson.Modeling.StructuralModel.StructuralModel, node: samson.DataModel.DataGraph.Node, nextNode: samson.DataModel.DataGraph.Node = None) → bool

Returns whether this node can add node as a child

canAddChildType(self: samson.Modeling.StructuralModel.StructuralModel, nodeType: samson.DataModel.DataGraph.Node.NodeType) → bool

Returns whether this node can add a node with type nodeType as a child

castToInteractionModelParticleSystem(self: samson.DataModel.DataGraph.Node) → SBMInteractionModelParticleSystem

Casts (if possible) from SBDDataGraphNode to SBMInteractionModelParticleSystem

castToLabel(self: samson.DataModel.DataGraph.Node) → SBDDocumentLabel

Casts (if possible) from SBDDataGraphNode to SBDDocumentLabel

castToVisualModel(self: samson.DataModel.DataGraph.Node) → SBMVisualModel

Casts (if possible) from SBDDataGraphNode to SBMVisualModel

centerTransform(self: samson.Modeling.StructuralModel.StructuralModel) → None

Centers the pivot of the transform on the center of mass of the particles contained in the structural model

clearConnectivityAnnotationInformation(self: samson.Modeling.StructuralModel.StructuralModel) → None

Clears the model’s connectivity annotation information

clearCrystallographicAndTransformationInformation(self: samson.Modeling.StructuralModel.StructuralModel) → None

Clears the model’s transformation information

clearHeterogenInformation(self: samson.Modeling.StructuralModel.StructuralModel) → None

Clears the model’s heterogen information

clearMiscellaneousInformation(self: samson.Modeling.StructuralModel.StructuralModel) → None

Clears the model’s miscellaneous information

clearPrimaryStructureInformation(self: samson.Modeling.StructuralModel.StructuralModel) → None

Clears the model’s primary structure information

clearSecondaryStructureInformation(self: samson.Modeling.StructuralModel.StructuralModel) → None

Clears the model’s secondary structure information

clearTitleInformation(self: samson.Modeling.StructuralModel.StructuralModel) → None

Clears the model’s title information

clone(self: samson.Modeling.StructuralModel.StructuralModel) → samson.Modeling.StructuralModel.StructuralModel

Returns a copy of the node and its descendants

static computeDomain(nodeIndexer: samson.DataModel.DataGraph.NodeIndexer) → SBDTypeSpatialDomain

Computes the domain containing the atoms and bond atoms in the node indexer

computeSecondaryStructure(self: samson.Modeling.StructuralModel.StructuralModel, forceUpdate: bool = False) → List[bool]

Computes the secondary structure for all residues in the structural model. Returns a list: 1st element - true if everything went well; 2nd element - true if and only if the secondary structure was changed compared to the previous call.

countNodes(self: samson.DataModel.DataGraph.Node, selectionString: str = '*', visitString: str = '*', includeDependencies: bool = False) → int

Count nodes into nodeIndexer, based on a selectionPredicate and a visitPredicate, with our without dependencies).

For selectionString and visitString use Node Specification Language (SAMSON API: Node Specification Language

create(self: samson.DataModel.DataGraph.Node) → None

Creates the node

createCovalentBonds(self: samson.Modeling.StructuralModel.StructuralModel) → None

Builds covalent bonds for the atoms belonging to the structural model according to the inter-atomic distances

createCovalentBondsByResidueType(*args, **kwargs)

Overloaded function.

1. createCovalentBondsByResidueType(self: samson.Modeling.StructuralModel.StructuralModel) -> int

Builds covalent bonds for the atoms belonging to the structural model according to the residue types, regardless of inter-atomic distances. If the bonds are already present, it sets the order of covalent bonds for the atoms belonging to the structural model according to the residue types.

2. createCovalentBondsByResidueType(self: samson.Modeling.StructuralModel.StructuralModel, residueIndexer: samson.DataModel.DataGraph.NodeIndexer) -> int

Builds covalent bonds for the atoms belonging to the given residues of the structural model according to the residue types, regardless of inter-atomic distances. If the bonds are already present, it sets the order of covalent bonds for the atoms belonging to the structural model according to the residue types.

erase(self: samson.DataModel.DataGraph.Node) → None

Erases the node

getChildren(self: samson.Modeling.StructuralModel.StructuralModel) → samson.DataModel.DataGraph.NodeIndexer

Returns the children of the structural model

getDocument(self: samson.DataModel.DataGraph.Node) → SBDDocument

Returns the document the node belongs to

getFlags(self: samson.DataModel.DataGraph.Node) → int

Returns the flags

getInheritedFlags(self: samson.DataModel.DataGraph.Node) → int

Returns the inherited flags

getMaterial(self: samson.DataModel.DataGraph.Node) → SBDDataGraphNodeMaterial

Returns the material of the node

getMaterialOwner(self: samson.DataModel.DataGraph.Node) → samson.DataModel.DataGraph.Node

Returns the node whose material is inherited

getMemoryFootprint(self: samson.Core.Reference.ReferenceTarget) → int

Returns the memory footprint

getNextModel(self: samson.Modeling.Model.Model) → samson.Modeling.Model.Model

Returns the next model in the parent

getNextNode(*args, **kwargs)

Overloaded function.

1. getNextNode(self: samson.DataModel.DataGraph.Node) -> samson.DataModel.DataGraph.Node

Returns the pointer to the next node in the children of the node’s parent

2. getNextNode(self: samson.DataModel.DataGraph.Node, nodeType: SBDDataGraphNode::Type) -> samson.DataModel.DataGraph.Node

Returns the pointer to the next node with type nodeType in the children of the node’s parent

getNode(self: int) → samson.DataModel.DataGraph.Node

Returns the unique node corresponding to the node index nodeIndex

getNodes(self: samson.DataModel.DataGraph.Node, selectionString: str = '*', visitString: str = '*', includeDependencies: bool = False) → samson.DataModel.DataGraph.NodeIndexer

Returns nodes (in a node indexer), based on a selectionString and a visitString, with our without dependencies).

For selectionString and visitString use Node Specification Language (SAMSON API: Node Specification Language

getOrientation(self: samson.Modeling.StructuralModel.StructuralModel) → SBDTypePhysicalMatrix33<SBDQuantityType<SBDQuantityUnitType<SBDQuantityUnitSystemSI, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0>, double> >

Returns the orientation of the structural model

getParent(self: samson.DataModel.DataGraph.Node) → samson.DataModel.DataGraph.Node

Returns the parent of the node

getPosition(self: samson.Modeling.StructuralModel.StructuralModel) → SBDTypePhysicalVector3<SBDQuantityType<SBDQuantityUnitType<SBDQuantityUnitSystemSI, -12, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0>, double> >

Returns the position of the structural model

getPreviousModel(self: samson.Modeling.Model.Model) → samson.Modeling.Model.Model

Returns the previous model in the parent

getPreviousNode(*args, **kwargs)

Overloaded function.

1. getPreviousNode(self: samson.DataModel.DataGraph.Node) -> samson.DataModel.DataGraph.Node

Returns the pointer to the previous node in the children of the node’s parent

2. getPreviousNode(self: samson.DataModel.DataGraph.Node, nodeType: SBDDataGraphNode::Type) -> samson.DataModel.DataGraph.Node

Returns the pointer to the previous node with type nodeType in the children of the node’s parent

getRoot(self: samson.DataModel.DataGraph.Node) → samson.DataModel.DataGraph.Node

Returns the root of the hierarchy the node belongs to

getStructuralRoot(self: samson.Modeling.StructuralModel.StructuralModel) → SBMStructuralModelNodeRoot

Returns the root

getThisNode(self: samson.DataModel.DataGraph.Node) → samson.DataModel.DataGraph.Node

Returns the pointer to this node

getTransform(self: samson.Modeling.StructuralModel.StructuralModel) → SBDTypeSpatialTransform

Returns the spatial transform of the structural model

getTypeString(type: SBDDataGraphNode::Type) → str

Returns a string describing the type of the data graph node

hasOneOf(self: samson.DataModel.DataGraph.Node, nodeIndexer: SBDDataGraphNodeIndexer) → bool

Returns true if and only if this node is one of the nodes of the nodeIndexer, or is the ancestor of one of them

isDynamicalModel(self: samson.DataModel.DataGraph.Node) → bool

Returns true when the node is a dynamical model

isIn(*args, **kwargs)

Overloaded function.

1. isIn(self: samson.DataModel.DataGraph.Node, node: samson.DataModel.DataGraph.Node) -> bool

Returns true if and only if this node is node, or descends from it

2. isIn(self: samson.DataModel.DataGraph.Node, nodeIndexer: SBDDataGraphNodeIndexer) -> bool

Returns true if and only if this node is one of the nodes of the nodeIndexer, or descends from one of them

isInteractionModel(self: samson.DataModel.DataGraph.Node) → bool

Returns true when the node is a interaction model

isModel(self: samson.DataModel.DataGraph.Node) → bool

Returns true when the node is a model

isOneOf(self: samson.DataModel.DataGraph.Node, nodeIndexer: SBDDataGraphNodeIndexer) → bool

Returns true if and only if this node is one of the nodes of the nodeIndexer

isPropertyModel(self: samson.DataModel.DataGraph.Node) → bool

Returns true when the node is a property model

isSimulator(self: samson.DataModel.DataGraph.Node) → bool

Returns true when the node is a simulator

isStructuralModel(self: samson.DataModel.DataGraph.Node) → bool

Returns true when the node is a structural model

isStructuralParticle(self: samson.DataModel.DataGraph.Node) → bool

Returns true when the node is a structural particle (an atom or a pseudo-atom)

isType(self: samson.DataModel.DataGraph.Node, type: SBDDataGraphNode::Type) → bool

Returns true when the type of the node corresponds to type

isVisualModel(self: samson.DataModel.DataGraph.Node) → bool

Returns true when the node is a visual model

printDebugInfo(self: samson.Modeling.StructuralModel.StructuralModel, offset: int = 0) → None

Prints some debugging information in stdout

removeChild(self: samson.Modeling.StructuralModel.StructuralModel, node: samson.DataModel.DataGraph.Node) → bool

Removes a child from the node

removeMaterial(self: samson.DataModel.DataGraph.Node) → bool

Removes material from the node

static replaceAtom(oldAtom: SBMStructuralModelNodeAtom, newAtom: SBMStructuralModelNodeAtom, preserveOldAtomPosition: bool = False) → None

Replaces atom oldAtom with atom newAtom. All bonds from the old atom are transferred to the new atom

static replaceBond(oldBond: SBMStructuralModelNodeBond, newBond: SBMStructuralModelNodeBond, flipBond: bool = False, preserveOldBondPosition: bool = False) → None

Replaces bond oldBond with bond newBond. All neighboring bonds from the old bond are transferred to the new bond

rotate(self: samson.Modeling.StructuralModel.StructuralModel, axis: samson.DataModel.Type.vector3, angle: samson.DataModel.Quantity.unitsSI) → None

Rotates the structural model

setColor(self: samson.DataModel.DataGraph.Node, color: SBDTypeColor) → bool

Sets the color for the node (modifies an existing material of the node or adds a material with a given color)

Args:

color (Color): color to set

setColorScheme(self: samson.DataModel.DataGraph.Node, colorScheme: SBDDataGraphNodeColorScheme) → bool

Sets the color scheme for the node (modifies an existing material of the node or adds a material with a given color scheme)

Args:

colorScheme (ColorScheme): color scheme to set

setMaterial(self: samson.DataModel.DataGraph.Node, material: SBDDataGraphNodeMaterial) → bool

Sets the material for the node.

Args:

material (Material): material to set

setOrientation(*args, **kwargs)

Overloaded function.

1. setOrientation(self: samson.Modeling.StructuralModel.StructuralModel, orientation: samson.DataModel.Type.matrix33) -> None

Sets the orientation of the structural model

2. setOrientation(self: samson.Modeling.StructuralModel.StructuralModel, orientation: samson.DataModel.Type.matrix33, transformParticles: bool) -> None

Sets the orientation of the structural model

setPosition(*args, **kwargs)

Overloaded function.

1. setPosition(self: samson.Modeling.StructuralModel.StructuralModel, position: samson.DataModel.Type.vector3) -> None

Sets the position of the structural model

2. setPosition(self: samson.Modeling.StructuralModel.StructuralModel, position: samson.DataModel.Type.vector3, transformParticles: bool) -> None

Sets the position of the structural model

setTransform(*args, **kwargs)

Overloaded function.

1. setTransform(self: samson.Modeling.StructuralModel.StructuralModel, transform: samson.DataModel.Type.spatialTransform) -> None

Sets the spatial transform of the structural model

2. setTransform(self: samson.Modeling.StructuralModel.StructuralModel, transform: samson.DataModel.Type.spatialTransform, transformParticles: bool) -> None

Sets the spatial transform of the structural model

toString(self: samson.Modeling.StructuralModel.StructuralModel) → str

A string representation

transform(self: samson.Modeling.StructuralModel.StructuralModel, transform: samson.DataModel.Type.spatialTransform) → None

Applies a spatial transform to the structural model

translate(self: samson.Modeling.StructuralModel.StructuralModel, translation: samson.DataModel.Type.vector3) → None

Translates the structural model

ArticulatedBody = NodeType.DynamicalModelNodeArticulatedBody

ArticulatedBodySystem = NodeType.DynamicalModelArticulatedBodySystem

Asset = NodeType.Asset

Atom = NodeType.StructuralModelNodeAtom

Backbone = NodeType.StructuralModelNodeBackbone

Bond = NodeType.StructuralModelNodeBond

Camera = NodeType.Camera

Chain = NodeType.StructuralModelNodeChain

Conformation = NodeType.StructuralModelConformation

Controller = NodeType.Controller

ControllerNode = NodeType.ControllerNode

DataGraphNodeGroup = NodeType.DataGraphNodeGroup

Document = NodeType.Document

DocumentManager = NodeType.DocumentManager

DynamicalGroup = NodeType.DynamicalModelNodeGroup

DynamicalModel = NodeType.DynamicalModel

DynamicalModelArticulatedBodySystem = NodeType.DynamicalModelArticulatedBodySystem

DynamicalModelNode = NodeType.DynamicalModelNode

DynamicalModelNodeArticulatedBody = NodeType.DynamicalModelNodeArticulatedBody

DynamicalModelNodeGroup = NodeType.DynamicalModelNodeGroup

DynamicalModelNodeParticle = NodeType.DynamicalModelNodeParticle

DynamicalModelNodeRigidBody = NodeType.DynamicalModelNodeRigidBody

DynamicalModelNodeRoot = NodeType.DynamicalModelNodeRoot

DynamicalModelParticleSystem = NodeType.DynamicalModelParticleSystem

DynamicalModelRigidBodySystem = NodeType.DynamicalModelRigidBodySystem

DynamicalNode = NodeType.DynamicalModelNode

DynamicalParticle = NodeType.DynamicalModelNodeParticle

DynamicalRoot = NodeType.DynamicalModelNodeRoot

Folder = NodeType.Folder

InteractionModel = NodeType.InteractionModel

InteractionModelArticulatedBodySystem = NodeType.InteractionModelArticulatedBodySystem

InteractionModelParticleSystem = NodeType.InteractionModelParticleSystem

InteractionModelRigidBodySystem = NodeType.InteractionModelRigidBodySystem

Label = NodeType.Label

Molecule = NodeType.StructuralModelNodeMolecule

NodeGroup = NodeType.DataGraphNodeGroup

ParticleSystem = NodeType.DynamicalModelParticleSystem

Path = NodeType.StructuralModelPath

PropertyModel = NodeType.PropertyModel

PropertyModelFunction = NodeType.PropertyModelFunction

Protein = NodeType.StructuralModelNodeProtein

PseudoAtom = NodeType.StructuralModelNodePseudoAtom

Residue = NodeType.StructuralModelNodeResidue

RigidBody = NodeType.DynamicalModelNodeRigidBody

RigidBodySystem = NodeType.DynamicalModelRigidBodySystem

Root = NodeType.StructuralModelNodeRoot

Segment = NodeType.StructuralModelNodeSegment

SideChain = NodeType.StructuralModelNodeSideChain

Simulator = NodeType.Simulator

SimulatorArticulatedBodySystem = NodeType.SimulatorArticulatedBodySystem

SimulatorParticleSystem = NodeType.SimulatorParticleSystem

SimulatorRigidBodySystem = NodeType.SimulatorRigidBodySystem

StateUpdater = NodeType.StateUpdater

StateUpdaterArticulatedBodySystem = NodeType.StateUpdaterArticulatedBodySystem

StateUpdaterParticleSystem = NodeType.StateUpdaterParticleSystem

StateUpdaterRigidBodySystem = NodeType.StateUpdaterRigidBodySystem

StructuralGroup = NodeType.StructuralModelNodeGroup

StructuralModel = NodeType.StructuralModel

StructuralModelConformation = NodeType.StructuralModelConformation

StructuralModelNode = NodeType.StructuralModelNode

StructuralModelNodeAtom = NodeType.StructuralModelNodeAtom

StructuralModelNodeBackbone = NodeType.StructuralModelNodeBackbone

StructuralModelNodeBond = NodeType.StructuralModelNodeBond

StructuralModelNodeChain = NodeType.StructuralModelNodeChain

StructuralModelNodeGroup = NodeType.StructuralModelNodeGroup

StructuralModelNodeMolecule = NodeType.StructuralModelNodeMolecule

StructuralModelNodeParticle = NodeType.StructuralModelNodeParticle

StructuralModelNodeProtein = NodeType.StructuralModelNodeProtein

StructuralModelNodePseudoAtom = NodeType.StructuralModelNodePseudoAtom

StructuralModelNodeResidue = NodeType.StructuralModelNodeResidue

StructuralModelNodeRoot = NodeType.StructuralModelNodeRoot

StructuralModelNodeSegment = NodeType.StructuralModelNodeSegment

StructuralModelNodeSideChain = NodeType.StructuralModelNodeSideChain

StructuralModelPath = NodeType.StructuralModelPath

StructuralParticle = NodeType.StructuralModelNodeParticle

Undefined = NodeType.Undefined

VisualModel = NodeType.VisualModel

connectivityAnnotationInformation

model’s connectivity annotation information

crystallographicAndTransformationInformation

model’s transformation information

hasConnectivityAnnotationInformation

Returns true when the model’s connectivity annotation information is set

hasCrystallographicAndTransformationInformation

Returns true when the model’s transformation information is set

hasHeterogenInformation

Returns true when the model’s heterogen information is set

hasMiscellaneousInformation

Returns true when the model’s miscellaneous information is set

hasPrimaryStructureInformation

Returns true when the model’s primary structure information is set

hasSecondaryStructureInformation

Returns true when the model’s secondary structure information is set

hasTitleInformation

Returns true when the model’s title information is set

heterogenInformation

model’s heterogen information

highlightingFlag

isCreated

Returns true if and only if the node is created

isErased

Returns true if and only if the node is erased

isHighlighted

Returns whether the node is highlighted

isSelected

Returns whether the node is selected

isSerializable

Returns true when the class is serializable

isVisible

Returns whether the node is visible

miscellaneousInformation

model’s miscellaneous information

modelType

Returns the model type

name

The name of the model

nodeIndex

Returns the node index (unique in the whole data graph, but non-persistent)

primaryStructureInformation

model’s primary structure information

secondaryStructureInformation

model’s secondary structure information

selectionFlag

titleInformation

model’s title information

type

Returns the type of the data graph node

typeString

Returns a string describing the type of this data graph node

visibilityFlag