Getting started

• What’s new in SAMSON 2020 R3?
• What’s new in SAMSON 2020 R2?
• What’s new in SAMSON 2020?
• Installing SAMSON
• Quick Start Guide
• The SAMSON User Guide

SAMSON Tutorials

• Camera: moving around
• Selecting objects
• Moving objects
• Producing publication-quality images
• Inspecting objects
• Simulating small molecules, graphene and proteins
• Node Specification Language

SAMSON Extensions Tutorials

• Building nanotubes models with SAMSON
• Aligning sequences with MUSCLE – Interactive Ramachandran plots
• Calculating non-linear normal modes
• Making nano-batarangs (and more)
• Computing axes of symmetry of biological assemblies
• Generating symmetry mates in SAMSON
• Fast geometry optimization with the FIRE minimizer
• Generating crystal models
• Performing Orbital-Free Density Functional Theory calculations
• Using the RDKit – SMILES Manager
• Perform Positional Anologue Scanning using the SMILES Manager
• Ligand unbinding pathway search
• Ligand Path Finder
• Protein conformational transition search
• Protein Path Finder
• ARAP interpolation for Protein structures
• Universal Force Field
• Interactive Modeling UFF (IM-UFF)
• Pathlines
• Optimize transition paths with P-NEB
• Export atoms trajectories along paths
• Docking libraries of ligands with AutoDock Vina Extended
• Computing normal modes that open a binding site
• Prepare, minimize, equilibrate and simulate using GROMACS Wizard
• Adenita SAMSON Edition: Interactive 3D modeling and visualization of DNA Nanostructures

Developing SAMSON Extensions

• Object-oriented programming in C++
• The SAMSON Developer Guide
• Installing the SAMSON SDK
• Generating a SAMSON Extension
• Building a SAMSON Extension on Windows
• Building a SAMSON Extension on MacOS
• Building a SAMSON Extension on Linux
• Distributing a SAMSON Extension on SAMSON Connect

Developer tutorials

• Programming new apps
• Handling units and dimensional analysis
• Importing data
• Exporting data
• Creating novel visualizations
• Programming new force fields
• Programming new state updaters: Steepest descent
• Programming new state updaters: Monte Carlo
• Integrating external programs
• Cite your research in SAMSON Extensions
• Programming a path generator
• Samples