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Welcome
Getting started
What’s new in SAMSON 2020 R3?
What’s new in SAMSON 2020 R2?
What’s new in SAMSON 2020?
Installing SAMSON
Quick Start Guide
The SAMSON User Guide
SAMSON Tutorials
Camera: moving around
Selecting objects
Moving objects
Producing publication-quality images
Inspecting objects
Simulating small molecules, graphene and proteins
Node Specification Language
SAMSON Extensions Tutorials
Adenita SAMSON Edition: Interactive 3D modeling and visualization of DNA Nanostructures
Aligning sequences with MUSCLE – Interactive Ramachandran plots
ARAP interpolation for Protein structures
Building nanotubes models with SAMSON
Calculating non-linear normal modes
Computing axes of symmetry of biological assemblies
Computing normal modes that open a binding site
Docking libraries of ligands with AutoDock Vina Extended
Export atoms trajectories along paths
Fast geometry optimization with the FIRE minimizer
Generating crystal models
Generating symmetry mates in SAMSON
Interactive Modeling UFF (IM-UFF)
Ligand unbinding pathway search
Ligand Path Finder
Making nano-batarangs (and more)
Optimize transition paths with P-NEB
Pathlines
Perform Positional Anologue Scanning using the SMILES Manager
Performing Orbital-Free Density Functional Theory calculations
Prepare, minimize, equilibrate and simulate using GROMACS Wizard
Protein conformational transition search
Protein docking with Hex
Protein Path Finder
Universal Force Field
Using the RDKit – SMILES Manager
Developing SAMSON Extensions
Object-oriented programming in C++
The SAMSON Developer Guide
Installing the SAMSON SDK
Generating a SAMSON Extension
Building a SAMSON Extension on Windows
Building a SAMSON Extension on MacOS
Building a SAMSON Extension on Linux
Distributing a SAMSON Extension on SAMSON Connect
Developer tutorials
Programming new apps
Handling units and dimensional analysis
Importing data
Exporting data
Creating novel visualizations
Programming new force fields
Programming new state updaters: Steepest descent
Programming new state updaters: Monte Carlo
Integrating external programs
Cite your research in SAMSON Extensions
Programming a path generator
Samples
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