Getting started Installing SAMSON Quick Start Guide The SAMSON User Guide SAMSON Tutorials Producing publication-quality images Snapping, cloning and extracting with selection editors Aligning sequences with MUSCLE – Interactive Ramachandran plots Calculating non-linear normal modes Building nanotubes models with SAMSON Simulating small molecules, graphene and proteins Making nano-batarangs (and more) Computing axes of symmetry of biological assemblies Generating symmetry mates in SAMSON Fast geometry optimization with the FIRE minimizer Generating crystal models Performing Orbital-Free Density Functional Theory calculations Using the RDKit – SMILES Manager Ligand unbinding pathway search Protein conformational transition search ARAP interpolation for Protein structures Universal Force Field Interactive Modeling UFF (IM-UFF)

Developing SAMSON Elements Installing the SAMSON SDK Generating a SAMSON Element Building a SAMSON Element on Windows Building a SAMSON Element on MacOS Building a SAMSON Element on Linux Distributing a SAMSON Element on SAMSON Connect The SAMSON Developer Guide Developer tutorials Programming new apps Handling units and dimensional analysis Importing and exporting data Creating novel visualizations Programming new force fields Programming new simulation methods Integrating external programs Cite your research in SAMSON Elements