Residue¶
-
class
samson.Modeling.StructuralModel.
Residue
(*args, **kwargs)¶ Bases:
samson.Modeling.StructuralModel.Group
This class describes a residue in a structural model
SAMSON API: SBMStructuralModelNodeResidue
Overloaded function.
- __init__(self: samson.Modeling.StructuralModel.Residue) -> None
Builds a residue
- __init__(self: samson.Modeling.StructuralModel.Residue, arg0: str) -> None
Builds a residue
-
class
NodeType
(self: samson.DataModel.DataGraph.Node.NodeType, arg0: int) → None¶ Bases:
pybind11_builtins.pybind11_object
-
ArticulatedBody
= NodeType.DynamicalModelNodeArticulatedBody¶
-
ArticulatedBodySystem
= NodeType.DynamicalModelArticulatedBodySystem¶
-
Atom
= NodeType.Atom¶
-
Backbone
= NodeType.StructuralModelNodeBackbone¶
-
Bond
= NodeType.StructuralModelNodeBond¶
-
Camera
= NodeType.Camera¶
-
Chain
= NodeType.StructuralModelNodeChain¶
-
Conformation
= NodeType.StructuralModelConformation¶
-
Controller
= NodeType.Controller¶
-
ControllerNode
= NodeType.ControllerNode¶
-
DataGraphNodeGroup
= NodeType.DataGraphNodeGroup¶
-
Document
= NodeType.Document¶
-
DocumentManager
= NodeType.DocumentManager¶
-
DynamicalGroup
= NodeType.DynamicalModelNodeGroup¶
-
DynamicalModel
= NodeType.DynamicalModel¶
-
DynamicalModelArticulatedBodySystem
= NodeType.DynamicalModelArticulatedBodySystem¶
-
DynamicalModelNode
= NodeType.DynamicalModelNode¶
-
DynamicalModelNodeArticulatedBody
= NodeType.DynamicalModelNodeArticulatedBody¶
-
DynamicalModelNodeGroup
= NodeType.DynamicalModelNodeGroup¶
-
DynamicalModelNodeParticle
= NodeType.DynamicalModelNodeParticle¶
-
DynamicalModelNodeRigidBody
= NodeType.DynamicalModelNodeRigidBody¶
-
DynamicalModelNodeRoot
= NodeType.DynamicalModelNodeRoot¶
-
DynamicalModelParticleSystem
= NodeType.DynamicalModelParticleSystem¶
-
DynamicalModelRigidBodySystem
= NodeType.DynamicalModelRigidBodySystem¶
-
DynamicalNode
= NodeType.DynamicalModelNode¶
-
DynamicalParticle
= NodeType.DynamicalModelNodeParticle¶
-
DynamicalRoot
= NodeType.DynamicalModelNodeRoot¶
-
Folder
= NodeType.Folder¶
-
InteractionModel
= NodeType.InteractionModel¶
-
InteractionModelArticulatedBodySystem
= NodeType.InteractionModelArticulatedBodySystem¶
-
InteractionModelParticleSystem
= NodeType.InteractionModelParticleSystem¶
-
InteractionModelRigidBodySystem
= NodeType.InteractionModelRigidBodySystem¶
-
Label
= NodeType.Label¶
-
Molecule
= NodeType.StructuralModelNodeMolecule¶
-
NodeGroup
= NodeType.DataGraphNodeGroup¶
-
ParticleSystem
= NodeType.DynamicalModelParticleSystem¶
-
Path
= NodeType.StructuralModelPath¶
-
PropertyModel
= NodeType.PropertyModel¶
-
PropertyModelFunction
= NodeType.PropertyModelFunction¶
-
Protein
= NodeType.StructuralModelNodeProtein¶
-
PseudoAtom
= NodeType.StructuralModelNodePseudoAtom¶
-
Residue
= NodeType.StructuralModelNodeResidue¶
-
RigidBody
= NodeType.DynamicalModelNodeRigidBody¶
-
RigidBodySystem
= NodeType.DynamicalModelRigidBodySystem¶
-
Root
= NodeType.StructuralModelNodeRoot¶
-
Segment
= NodeType.StructuralModelNodeSegment¶
-
SideChain
= NodeType.StructuralModelNodeSideChain¶
-
Simulator
= NodeType.Simulator¶
-
SimulatorArticulatedBodySystem
= NodeType.SimulatorArticulatedBodySystem¶
-
SimulatorParticleSystem
= NodeType.SimulatorParticleSystem¶
-
SimulatorRigidBodySystem
= NodeType.SimulatorRigidBodySystem¶
-
StateUpdater
= NodeType.StateUpdater¶
-
StateUpdaterArticulatedBodySystem
= NodeType.StateUpdaterArticulatedBodySystem¶
-
StateUpdaterParticleSystem
= NodeType.StateUpdaterParticleSystem¶
-
StateUpdaterRigidBodySystem
= NodeType.StateUpdaterRigidBodySystem¶
-
StructuralGroup
= NodeType.StructuralModelNodeGroup¶
-
StructuralModel
= NodeType.StructuralModel¶
-
StructuralModelConformation
= NodeType.StructuralModelConformation¶
-
StructuralModelNode
= NodeType.StructuralModelNode¶
-
StructuralModelNodeAtom
= NodeType.Atom¶
-
StructuralModelNodeBackbone
= NodeType.StructuralModelNodeBackbone¶
-
StructuralModelNodeBond
= NodeType.StructuralModelNodeBond¶
-
StructuralModelNodeChain
= NodeType.StructuralModelNodeChain¶
-
StructuralModelNodeGroup
= NodeType.StructuralModelNodeGroup¶
-
StructuralModelNodeMolecule
= NodeType.StructuralModelNodeMolecule¶
-
StructuralModelNodeParticle
= NodeType.StructuralModelNodeParticle¶
-
StructuralModelNodeProtein
= NodeType.StructuralModelNodeProtein¶
-
StructuralModelNodePseudoAtom
= NodeType.StructuralModelNodePseudoAtom¶
-
StructuralModelNodeResidue
= NodeType.StructuralModelNodeResidue¶
-
StructuralModelNodeRoot
= NodeType.StructuralModelNodeRoot¶
-
StructuralModelNodeSegment
= NodeType.StructuralModelNodeSegment¶
-
StructuralModelNodeSideChain
= NodeType.StructuralModelNodeSideChain¶
-
StructuralModelPath
= NodeType.StructuralModelPath¶
-
StructuralParticle
= NodeType.StructuralModelNodeParticle¶
-
Undefined
= NodeType.Undefined¶
-
VisualModel
= NodeType.VisualModel¶
-
-
class
ResidueType
(self: samson.Modeling.StructuralModel.Residue.ResidueType, arg0: int) → None¶ Bases:
pybind11_builtins.pybind11_object
-
A
= ResidueType.A¶
-
ALA
= ResidueType.ALA¶
-
ARG
= ResidueType.ARG¶
-
ASN
= ResidueType.ASN¶
-
ASP
= ResidueType.ASP¶
-
ASX
= ResidueType.ASX¶
-
C
= ResidueType.C¶
-
CYS
= ResidueType.CYS¶
-
DA
= ResidueType.DA¶
-
DC
= ResidueType.DC¶
-
DG
= ResidueType.DG¶
-
DI
= ResidueType.DI¶
-
DT
= ResidueType.DT¶
-
G
= ResidueType.G¶
-
GLN
= ResidueType.GLN¶
-
GLU
= ResidueType.GLU¶
-
GLX
= ResidueType.GLX¶
-
GLY
= ResidueType.GLY¶
-
HIS
= ResidueType.HIS¶
-
I
= ResidueType.I¶
-
ILE
= ResidueType.ILE¶
-
LEU
= ResidueType.LEU¶
-
LYS
= ResidueType.LYS¶
-
MET
= ResidueType.MET¶
-
PHE
= ResidueType.PHE¶
-
PRO
= ResidueType.PRO¶
-
PYL
= ResidueType.PYL¶
-
SEC
= ResidueType.SEC¶
-
SER
= ResidueType.SER¶
-
THR
= ResidueType.THR¶
-
TRP
= ResidueType.TRP¶
-
TYR
= ResidueType.TYR¶
-
U
= ResidueType.U¶
-
Undefined
= ResidueType.Undefined¶
-
VAL
= ResidueType.VAL¶
-
XAA
= ResidueType.XAA¶
-
XLE
= ResidueType.XLE¶
-
-
class
SecondaryStructureType
(self: samson.Modeling.StructuralModel.Residue.SecondaryStructureType, arg0: int) → None¶ Bases:
pybind11_builtins.pybind11_object
-
Alpha
= SecondaryStructureType.Alpha¶
-
Beta
= SecondaryStructureType.Beta¶
-
Unstructured
= SecondaryStructureType.Unstructured¶
-
-
addChild
(self: samson.Modeling.StructuralModel.Residue, node: samson.DataModel.DataGraph.Node, nextNode: samson.DataModel.DataGraph.Node=None) → bool¶ Adds a child to the node
-
addMaterial
(self: samson.DataModel.DataGraph.Node, material: SBDDataGraphNodeMaterial) → bool¶ Adds material to the node
-
canAddChild
(self: samson.Modeling.StructuralModel.Residue, node: samson.DataModel.DataGraph.Node, nextNode: samson.DataModel.DataGraph.Node=None) → bool¶ Returns whether this node can add node as a child
-
canAddChildType
(self: samson.Modeling.StructuralModel.Residue, nodeType: samson.DataModel.DataGraph.Node.NodeType) → bool¶ Returns whether this node can add a node with type nodeType as a child
-
castToInteractionModelParticleSystem
(self: samson.DataModel.DataGraph.Node) → SBMInteractionModelParticleSystem¶ Casts (if possible) from SBDDataGraphNode to SBMInteractionModelParticleSystem
-
castToLabel
(self: samson.DataModel.DataGraph.Node) → SBDDocumentLabel¶ Casts (if possible) from SBDDataGraphNode to SBDDocumentLabel
-
castToVisualModel
(self: samson.DataModel.DataGraph.Node) → SBMVisualModel¶ Casts (if possible) from SBDDataGraphNode to SBMVisualModel
-
clearComment
(self: samson.Modeling.StructuralModel.Group) → None¶ Clears the group’s Comment
-
clearStatusBit
(self: samson.Modeling.StructuralModel.Group) → None¶ Clears the group’s status bit
-
clone
(self: samson.Modeling.StructuralModel.Residue) → samson.Modeling.StructuralModel.Residue¶ Returns a copy of the node and its descendants
-
countNodes
(self: samson.DataModel.DataGraph.Node, selectionString: str='*', visitString: str='*', includeDependencies: bool=False) → int¶ - Count nodes into nodeIndexer, based on a selectionPredicate and a visitPredicate, with our without dependencies).
- For selectionString and visitString use Node Specification Language (SAMSON API: Node Specification Language
-
create
(self: samson.DataModel.DataGraph.Node) → None¶ Creates the node
-
erase
(self: samson.DataModel.DataGraph.Node) → None¶ Erases the node
-
getBackbone
(self: samson.Modeling.StructuralModel.Residue) → samson.Modeling.StructuralModel.Backbone¶
-
getDocument
(self: samson.DataModel.DataGraph.Node) → SBDDocument¶ Returns the document the node belongs to
-
getFlags
(self: samson.DataModel.DataGraph.Node) → int¶ Returns the flags
-
getInheritedFlags
(self: samson.DataModel.DataGraph.Node) → int¶ Returns the inherited flags
-
getMaterial
(self: samson.DataModel.DataGraph.Node) → SBDDataGraphNodeMaterial¶ Returns the material of the node
-
getMaterialOwner
(self: samson.DataModel.DataGraph.Node) → samson.DataModel.DataGraph.Node¶ Returns the node whose material is inherited
-
getMemoryFootprint
(self: samson.Core.Reference.ReferenceTarget) → int¶ Returns the memory footprint
-
getModel
(self: samson.Modeling.StructuralModel.Node) → samson.Modeling.StructuralModel.StructuralModel¶
-
getNextAminoAcid
(self: samson.Modeling.StructuralModel.Residue) → samson.Modeling.StructuralModel.Residue¶
-
getNextNode
(*args, **kwargs)¶ Overloaded function.
- getNextNode(self: samson.DataModel.DataGraph.Node) -> samson.DataModel.DataGraph.Node
Returns the pointer to the next node in the children of the node’s parent
- getNextNode(self: samson.DataModel.DataGraph.Node, nodeType: SBDDataGraphNode::Type) -> samson.DataModel.DataGraph.Node
Returns the pointer to the next node with type nodeType in the children of the node’s parent
-
getNextNucleicAcid
(self: samson.Modeling.StructuralModel.Residue) → samson.Modeling.StructuralModel.Residue¶
-
getNextResidue
(self: samson.Modeling.StructuralModel.Residue) → samson.Modeling.StructuralModel.Residue¶
-
getNextStructuralNode
(self: samson.Modeling.StructuralModel.Node) → samson.Modeling.StructuralModel.Node¶
-
getNode
(self: int) → samson.DataModel.DataGraph.Node¶ Returns the unique node corresponding to the node index nodeIndex
-
getNodes
(self: samson.DataModel.DataGraph.Node, selectionString: str='*', visitString: str='*', includeDependencies: bool=False) → samson.DataModel.DataGraph.NodeIndexer¶ - Returns nodes (in a node indexer), based on a selectionString and a visitString, with our without dependencies).
- For selectionString and visitString use Node Specification Language (SAMSON API: Node Specification Language
-
getParent
(self: samson.DataModel.DataGraph.Node) → samson.DataModel.DataGraph.Node¶ Returns the parent of the node
-
getPreviousAminoAcid
(self: samson.Modeling.StructuralModel.Residue) → samson.Modeling.StructuralModel.Residue¶
-
getPreviousNode
(*args, **kwargs)¶ Overloaded function.
- getPreviousNode(self: samson.DataModel.DataGraph.Node) -> samson.DataModel.DataGraph.Node
Returns the pointer to the previous node in the children of the node’s parent
- getPreviousNode(self: samson.DataModel.DataGraph.Node, nodeType: SBDDataGraphNode::Type) -> samson.DataModel.DataGraph.Node
Returns the pointer to the previous node with type nodeType in the children of the node’s parent
-
getPreviousNucleicAcid
(self: samson.Modeling.StructuralModel.Residue) → samson.Modeling.StructuralModel.Residue¶
-
getPreviousResidue
(self: samson.Modeling.StructuralModel.Residue) → samson.Modeling.StructuralModel.Residue¶
-
getPreviousStructuralNode
(self: samson.Modeling.StructuralModel.Node) → samson.Modeling.StructuralModel.Node¶
-
getResidueTypeString
(self: samson.Modeling.StructuralModel.Residue, arg0: SBMStructuralModelNodeResidue::ResidueType) → str¶
-
getRoot
(self: samson.DataModel.DataGraph.Node) → samson.DataModel.DataGraph.Node¶ Returns the root of the hierarchy the node belongs to
-
getSecondaryStructureTypeString
(self: samson.Modeling.StructuralModel.Residue, secondaryStructureType: SBMStructuralModelNodeResidue::SecondaryStructureType) → str¶ Returns the secondary structure type secondaryStructureType as a string
-
getSideChain
(self: samson.Modeling.StructuralModel.Residue) → SBMStructuralModelNodeSideChain¶
-
getThisNode
(self: samson.DataModel.DataGraph.Node) → samson.DataModel.DataGraph.Node¶ Returns the pointer to this node
-
getTypeString
(type: SBDDataGraphNode::Type) → str¶ Returns a string describing the type of the data graph node
-
hasOneOf
(self: samson.DataModel.DataGraph.Node, nodeIndexer: SBDDataGraphNodeIndexer) → bool¶ Returns true if and only if this node is one of the nodes of the nodeIndexer, or is the ancestor of one of them
-
isDynamicalModel
(self: samson.DataModel.DataGraph.Node) → bool¶ Returns true when the node is a dynamical model
-
isIn
(*args, **kwargs)¶ Overloaded function.
- isIn(self: samson.DataModel.DataGraph.Node, node: samson.DataModel.DataGraph.Node) -> bool
Returns true if and only if this node is node, or descends from it
- isIn(self: samson.DataModel.DataGraph.Node, nodeIndexer: SBDDataGraphNodeIndexer) -> bool
Returns true if and only if this node is one of the nodes of the nodeIndexer, or descends from one of them
-
isInteractionModel
(self: samson.DataModel.DataGraph.Node) → bool¶ Returns true when the node is a interaction model
-
isModel
(self: samson.DataModel.DataGraph.Node) → bool¶ Returns true when the node is a model
-
isOneOf
(self: samson.DataModel.DataGraph.Node, nodeIndexer: SBDDataGraphNodeIndexer) → bool¶ Returns true if and only if this node is one of the nodes of the nodeIndexer
-
isPropertyModel
(self: samson.DataModel.DataGraph.Node) → bool¶ Returns true when the node is a property model
-
isSimulator
(self: samson.DataModel.DataGraph.Node) → bool¶ Returns true when the node is a simulator
-
isStructuralModel
(self: samson.DataModel.DataGraph.Node) → bool¶ Returns true when the node is a structural model
-
isStructuralParticle
(self: samson.DataModel.DataGraph.Node) → bool¶ Returns true when the node is a structural particle (an atom or a pseudo-atom)
-
isType
(self: samson.DataModel.DataGraph.Node, type: SBDDataGraphNode::Type) → bool¶ Returns true when the type of the node corresponds to type
-
isVisualModel
(self: samson.DataModel.DataGraph.Node) → bool¶ Returns true when the node is a visual model
-
removeChild
(self: samson.Modeling.StructuralModel.Residue, node: samson.DataModel.DataGraph.Node) → bool¶ Removes a child from the node
-
removeMaterial
(self: samson.DataModel.DataGraph.Node) → bool¶ Removes material from the node
-
setColor
(self: samson.DataModel.DataGraph.Node, color: SBDColor, applyToChildren: bool=False) → None¶ Sets the color for the node (removes an existing material from the node and adds a given material based on a given color)
- Args:
color (Color): material to set
applyToChildren (boolean): if set to True goes through child nodes (default value: False)
-
setMaterial
(self: samson.DataModel.DataGraph.Node, material: SBDDataGraphNodeMaterial, applyToChildren: bool=False) → None¶ Sets the material for the node (removes an existing material from the node and adds a given material)
- Args:
material (Material): material to set
applyToChildren (boolean): if set to True goes through child nodes (default value: False)
-
sprint
(self: samson.Modeling.StructuralModel.Group, offset: int=0) → None¶ Prints some debugging information
-
toString
(self: samson.Modeling.StructuralModel.Residue) → str¶ Converts to a string
-
A
= ResidueType.A¶
-
ALA
= ResidueType.ALA¶
-
ARG
= ResidueType.ARG¶
-
ASN
= ResidueType.ASN¶
-
ASP
= ResidueType.ASP¶
-
ASX
= ResidueType.ASX¶
-
Alpha
= SecondaryStructureType.Alpha¶
-
ArticulatedBody
= NodeType.DynamicalModelNodeArticulatedBody¶
-
ArticulatedBodySystem
= NodeType.DynamicalModelArticulatedBodySystem¶
-
Atom
= NodeType.Atom¶
-
Backbone
= NodeType.StructuralModelNodeBackbone¶
-
Beta
= SecondaryStructureType.Beta¶
-
Bond
= NodeType.StructuralModelNodeBond¶
-
C
= ResidueType.C¶
-
CYS
= ResidueType.CYS¶
-
Camera
= NodeType.Camera¶
-
Chain
= NodeType.StructuralModelNodeChain¶
-
Conformation
= NodeType.StructuralModelConformation¶
-
Controller
= NodeType.Controller¶
-
ControllerNode
= NodeType.ControllerNode¶
-
DA
= ResidueType.DA¶
-
DC
= ResidueType.DC¶
-
DG
= ResidueType.DG¶
-
DI
= ResidueType.DI¶
-
DT
= ResidueType.DT¶
-
DataGraphNodeGroup
= NodeType.DataGraphNodeGroup¶
-
Document
= NodeType.Document¶
-
DocumentManager
= NodeType.DocumentManager¶
-
DynamicalGroup
= NodeType.DynamicalModelNodeGroup¶
-
DynamicalModel
= NodeType.DynamicalModel¶
-
DynamicalModelArticulatedBodySystem
= NodeType.DynamicalModelArticulatedBodySystem¶
-
DynamicalModelNode
= NodeType.DynamicalModelNode¶
-
DynamicalModelNodeArticulatedBody
= NodeType.DynamicalModelNodeArticulatedBody¶
-
DynamicalModelNodeGroup
= NodeType.DynamicalModelNodeGroup¶
-
DynamicalModelNodeParticle
= NodeType.DynamicalModelNodeParticle¶
-
DynamicalModelNodeRigidBody
= NodeType.DynamicalModelNodeRigidBody¶
-
DynamicalModelNodeRoot
= NodeType.DynamicalModelNodeRoot¶
-
DynamicalModelParticleSystem
= NodeType.DynamicalModelParticleSystem¶
-
DynamicalModelRigidBodySystem
= NodeType.DynamicalModelRigidBodySystem¶
-
DynamicalNode
= NodeType.DynamicalModelNode¶
-
DynamicalParticle
= NodeType.DynamicalModelNodeParticle¶
-
DynamicalRoot
= NodeType.DynamicalModelNodeRoot¶
-
Folder
= NodeType.Folder¶
-
G
= ResidueType.G¶
-
GLN
= ResidueType.GLN¶
-
GLU
= ResidueType.GLU¶
-
GLX
= ResidueType.GLX¶
-
GLY
= ResidueType.GLY¶
-
HIS
= ResidueType.HIS¶
-
I
= ResidueType.I¶
-
ILE
= ResidueType.ILE¶
-
InteractionModel
= NodeType.InteractionModel¶
-
InteractionModelArticulatedBodySystem
= NodeType.InteractionModelArticulatedBodySystem¶
-
InteractionModelParticleSystem
= NodeType.InteractionModelParticleSystem¶
-
InteractionModelRigidBodySystem
= NodeType.InteractionModelRigidBodySystem¶
-
LEU
= ResidueType.LEU¶
-
LYS
= ResidueType.LYS¶
-
Label
= NodeType.Label¶
-
MET
= ResidueType.MET¶
-
Molecule
= NodeType.StructuralModelNodeMolecule¶
-
NodeGroup
= NodeType.DataGraphNodeGroup¶
-
PHE
= ResidueType.PHE¶
-
PRO
= ResidueType.PRO¶
-
PYL
= ResidueType.PYL¶
-
ParticleSystem
= NodeType.DynamicalModelParticleSystem¶
-
Path
= NodeType.StructuralModelPath¶
-
PropertyModel
= NodeType.PropertyModel¶
-
PropertyModelFunction
= NodeType.PropertyModelFunction¶
-
Protein
= NodeType.StructuralModelNodeProtein¶
-
PseudoAtom
= NodeType.StructuralModelNodePseudoAtom¶
-
Residue
= NodeType.StructuralModelNodeResidue¶
-
RigidBody
= NodeType.DynamicalModelNodeRigidBody¶
-
RigidBodySystem
= NodeType.DynamicalModelRigidBodySystem¶
-
Root
= NodeType.StructuralModelNodeRoot¶
-
SEC
= ResidueType.SEC¶
-
SER
= ResidueType.SER¶
-
Segment
= NodeType.StructuralModelNodeSegment¶
-
SideChain
= NodeType.StructuralModelNodeSideChain¶
-
Simulator
= NodeType.Simulator¶
-
SimulatorArticulatedBodySystem
= NodeType.SimulatorArticulatedBodySystem¶
-
SimulatorParticleSystem
= NodeType.SimulatorParticleSystem¶
-
SimulatorRigidBodySystem
= NodeType.SimulatorRigidBodySystem¶
-
StateUpdater
= NodeType.StateUpdater¶
-
StateUpdaterArticulatedBodySystem
= NodeType.StateUpdaterArticulatedBodySystem¶
-
StateUpdaterParticleSystem
= NodeType.StateUpdaterParticleSystem¶
-
StateUpdaterRigidBodySystem
= NodeType.StateUpdaterRigidBodySystem¶
-
StructuralGroup
= NodeType.StructuralModelNodeGroup¶
-
StructuralModel
= NodeType.StructuralModel¶
-
StructuralModelConformation
= NodeType.StructuralModelConformation¶
-
StructuralModelNode
= NodeType.StructuralModelNode¶
-
StructuralModelNodeAtom
= NodeType.Atom¶
-
StructuralModelNodeBackbone
= NodeType.StructuralModelNodeBackbone¶
-
StructuralModelNodeBond
= NodeType.StructuralModelNodeBond¶
-
StructuralModelNodeChain
= NodeType.StructuralModelNodeChain¶
-
StructuralModelNodeGroup
= NodeType.StructuralModelNodeGroup¶
-
StructuralModelNodeMolecule
= NodeType.StructuralModelNodeMolecule¶
-
StructuralModelNodeParticle
= NodeType.StructuralModelNodeParticle¶
-
StructuralModelNodeProtein
= NodeType.StructuralModelNodeProtein¶
-
StructuralModelNodePseudoAtom
= NodeType.StructuralModelNodePseudoAtom¶
-
StructuralModelNodeResidue
= NodeType.StructuralModelNodeResidue¶
-
StructuralModelNodeRoot
= NodeType.StructuralModelNodeRoot¶
-
StructuralModelNodeSegment
= NodeType.StructuralModelNodeSegment¶
-
StructuralModelNodeSideChain
= NodeType.StructuralModelNodeSideChain¶
-
StructuralModelPath
= NodeType.StructuralModelPath¶
-
StructuralParticle
= NodeType.StructuralModelNodeParticle¶
-
THR
= ResidueType.THR¶
-
TRP
= ResidueType.TRP¶
-
TYR
= ResidueType.TYR¶
-
U
= ResidueType.U¶
-
Undefined
= ResidueType.Undefined¶
-
Unstructured
= SecondaryStructureType.Unstructured¶
-
VAL
= ResidueType.VAL¶
-
VisualModel
= NodeType.VisualModel¶
-
XAA
= ResidueType.XAA¶
-
XLE
= ResidueType.XLE¶
-
comment
¶ group’s comment
-
hasComment
¶ Returns true when the group’s Comment is set
-
hasCompleteAminoAcidBackbone
¶ Returns true if and only if the residue has a complete amino-acid backbone
-
hasStatusBit
¶ Returns true when the group’s status bit is set
-
highlightingFlag
¶
-
isAminoAcid
¶ Returns true if and only if the residue is an amino acid
-
isCreated
¶ Returns true if and only if the node is created
-
isErased
¶ Returns true if and only if the node is erased
-
isHighlighted
¶ Returns whether the node is highlighted
-
isNucleicAcid
¶ Returns true if and only if the residue is a nucleic acid
-
isSelected
¶ Returns whether the node is selected
-
isSerializable
¶ Returns true when the class is serializable
-
isTerminal
¶ Returns true if and only if the residue is terminal
-
isVisible
¶ Returns whether the node is visible
-
mobilityFlag
¶
-
name
¶ name of the model
-
nodeIndex
¶ Returns the node index (unique in the whole data graph, but non-persistent)
-
residueType
¶
-
residueTypeString
¶
-
secondaryStructureType
¶ Returns the most probable secondary structure based on bonds parameters and residue geometry
-
secondaryStructureTypeString
¶ Returns the secondary structure type as a string
-
selectionFlag
¶
-
statusBit
¶ group’s status bit
-
type
¶
-
typeString
¶ Returns a string describing the type of this data graph node
-
visibilityFlag
¶