This class describes a bond in a structural model.

Constructors and destructors
	SBMStructuralModelNodeHydrogenBond ()
	Constructs a H-bond.

	SBMStructuralModelNodeHydrogenBond (SBMStructuralModelNodeAtom acceptor, SBMStructuralModelNodeAtom donor, SBMStructuralModelNodeAtom *hydrogen=nullptr)
	Constructs a H-bond.

virtual	~SBMStructuralModelNodeHydrogenBond ()
	Destructs the H-bond.

Serialization
virtual bool	isSerializable () const override
	Returns false.

virtual void	serialize (SBCSerializer *serializer, const SBNodeIndexer &nodeIndexer, const SBVersionNumber &sdkVersionNumber=SB_SDK_VERSION_NUMBER, const SBVersionNumber &classVersionNumber=SBVersionNumber(1, 0, 0)) const override
	Serializes the bond.

virtual void	unserialize (SBCSerializer *serializer, const SBNodeIndexer &nodeIndexer, const SBVersionNumber &sdkVersionNumber=SB_SDK_VERSION_NUMBER, const SBVersionNumber &classVersionNumber=SBVersionNumber(1, 0, 0)) override
	Unserializes the bond.

Selection
void	setSelectionFlag (bool flag)
	Sets the selection flag and selects corresponding atoms.

Topology
SBMStructuralModelNodeAtom *	getAcceptor () const
	Returns a pointer to the acceptor atom.

SBMStructuralModelNodeAtom *	getDonor () const
	Returns a pointer to the donor atom.

SBMStructuralModelNodeAtom *	getHydrogen () const
	Returns a pointer to the hydrogen atom.

SBQuantity::length	getDonorAcceptorDistance () const
	Returns the donor-acceptor distance.

SBQuantity::length	getHydrogenAcceptorDistance () const
	Returns the hydrogen-acceptor distance.

SBQuantity::length	getDonorHydrogenDistance () const
	Returns the donor-hydrogen distance.

SBQuantity::degree	getAngle () const
	Returns the donor-hydrogen-acceptor angle.

bool	isLinking (const SBNodeIndexer &nodeIndexer) const
	Returns true if and only if donor and acceptor atoms are in `nodeIndexer`, or descends from a node of `nodeIndexer`.

virtual SBMStructuralModelNodeHydrogenBond *	clone () override
	Returns a copy of the node and its descendants.

static SBQuantity::degree	getAngle (SBMStructuralModelNodeAtom donor, SBMStructuralModelNodeAtom hydrogen, SBMStructuralModelNodeAtom *acceptor)
	Returns the donor-hydrogen-acceptor angle.

Identity
SBDDataGraphNode::Type	getType () const override
	Returns the node type (SBNode::HydrogenBond)

Selection functions
virtual void	getNodes (SBNodeIndexer &nodeIndexer, SBNode::Type nodeType, bool selectedNodesOnly=false, const SBNodePredicate &visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const override
	Collects nodes into `nodeIndexer`, based on a `nodeType`, a selection status and a `visitPredicate`, with or without dependencies.

virtual void	getNodes (SBNodeIndexer &nodeIndexer, const SBNodePredicate &selectionPredicate=SBDDataGraphNode::All(), const SBNodePredicate &visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const override
	Collects nodes into `nodeIndexer`, based on a `selectionPredicate` and a `visitPredicate`, with or without dependencies.

virtual bool	hasNode (SBNode::Type nodeType, bool selectedNodesOnly=false, const SBNodePredicate &visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const override
	Checks for nodes based on a `nodeType`, a selection status and a `visitPredicate`, with or without dependencies.

virtual bool	hasNode (const SBNodePredicate &selectionPredicate=SBDDataGraphNode::All(), const SBNodePredicate &visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const override
	Checks for nodes based on a `selectionPredicate` and a `visitPredicate`, with or without dependencies.

Debugging
virtual void	print (unsigned int offset=0) const override
	Prints debugging information.

	SB_NODE_GETTER_0 (, SBMStructuralModelNodeAtom *, GetAcceptor)

	SB_NODE_GETTER_0 (, SBMStructuralModelNodeAtom *, GetDonor)

	SB_NODE_GETTER_0 (, SBMStructuralModelNodeAtom *, GetHydrogen)

	SB_NODE_GETTER_0 (, SBQuantity::length, GetDonorAcceptorDistance)

	SB_NODE_GETTER_0 (, SBQuantity::length, GetHydrogenAcceptorDistance)

	SB_NODE_GETTER_0 (, SBQuantity::length, GetDonorHydrogenDistance)

	SB_NODE_GETTER_0 (, SBQuantity::degree, GetAngle)

	SB_DECLARE_DATA (SBMStructuralModelNodeHydrogenBond)

Additional Inherited Members
Public Types inherited from SBMStructuralModelNodeBond
enum	BondType { Undefined , Single , Double , Triple , Amide , Aromatic , Dummy }
	The bond type. More...

Public Types inherited from SBDDataGraphNode
enum	Type { Undefined , StructuralModel , StructuralModelNode , StructuralModelConformation , Conformation , StructuralModelPath , Path , StructuralModelNodeGroup , StructuralGroup , StructuralModelNodeRoot , Root , StructuralModelNodeAtom , Atom , StructuralModelNodeBond , Bond , StructuralModelNodeHydrogenBond , HydrogenBond , StructuralModelNodeHydrogenBondGroup , HydrogenBondGroup , StructuralModelNodeResidue , Residue , StructuralModelNodeSegment , Segment , StructuralModelNodeChain , Chain , StructuralModelNodeMolecule , Molecule , StructuralModelNodeBackbone , Backbone , StructuralModelNodeSideChain , SideChain , VisualModel , VisualModelMesh , Mesh , DynamicalModel , DynamicalModelParticleSystem , ParticleSystem , DynamicalModelRigidBodySystem , RigidBodySystem , DynamicalModelArticulatedBodySystem , ArticulatedBodySystem , DynamicalModelNode , DynamicalNode , DynamicalModelNodeGroup , DynamicalGroup , DynamicalModelNodeRoot , DynamicalRoot , DynamicalModelNodeParticle , Particle , DynamicalModelNodeRigidBody , RigidBody , DynamicalModelNodeArticulatedBody , ArticulatedBody , InteractionModel , InteractionModelParticleSystem , InteractionModelRigidBodySystem , InteractionModelArticulatedBodySystem , PropertyModel , PropertyModelFunction , Simulator , SimulatorParticleSystem , SimulatorRigidBodySystem , SimulatorArticulatedBodySystem , StateUpdater , StateUpdaterParticleSystem , StateUpdaterRigidBodySystem , StateUpdaterArticulatedBodySystem , Animation , Camera , Document , DocumentManager , File , Folder , Label , Light , Note , Presentation , RenderPreset , DataGraphNodeGroup , NodeGroup , Controller , ControllerNode , Asset }
	The type of the data graph node. More...

enum class	RenderingPass { Setup , OpaqueGeometry , SelectableGeometry , ShadowingGeometry , TransparentGeometry , Interface , Text }
	The rendering pass. More...

Public Member Functions inherited from SBMStructuralModelNodeBond
SBQuantity::dimensionless const &	getOrder () const
	Returns the bond order.

void	setOrder (const SBQuantity::dimensionless &order)
	Sets the bond order to `order`.

SBQuantity::dimensionless const &	getMinimumOrder () const
	Returns the minimum bond order for the inspector.

SBQuantity::dimensionless const &	getMaximumOrder () const
	Returns the maximum bond order for the inspector.

SBQuantity::dimensionless const &	getOrderSingleStep () const
	Returns the bond order single step for the inspector.

std::string	getOrderSuffix () const
	Returns the bond order suffix for the inspector.

BondType	getBondType () const
	Returns the bond type.

void	setBondType (BondType bondType)
	Sets the bond type to `bondType`.

SBMStructuralModelNodeAtom *	getLeftAtom () const
	Returns a pointer to the left atom.

SBMStructuralModelNodeAtom *	getRightAtom () const
	Returns a pointer to the right atom.

SBMStructuralModelNodeAtom *	getOppositeAtom (const SBMStructuralModelNodeAtom *atom) const
	Returns the pointer to the atom opposite `atom`, when `atom` is either the left atom or the right atom of the bond.

SBQuantity::length	getLength () const
	Compute the length of the bond.

SBPosition3	getMidPoint () const
	Compute the mid point of the bond.

const SBVector3 &	getDisplacement () const
	Returns the displacement used for display when multiple bond rendering is turned on.

bool	isLinking (SBMElement::Type elementType) const
	Returns true if and only if at least one of the atoms that the bond links is of element type `elementType`.

bool	isLinking (const SBNodeIndexer &nodeIndexer) const
	Returns true if and only if either atom is in `nodeIndexer`, or descends from a node of `nodeIndexer`.

	SBMStructuralModelNodeBond ()
	Constructs a bond.

	SBMStructuralModelNodeBond (SBMStructuralModelNodeAtom leftAtom, SBMStructuralModelNodeAtom rightAtom, const SBQuantity::dimensionless &order=SBQuantity::dimensionless(1.0))
	Constructs a bond between atoms `leftAtom` and `rightAtom` and a specific bond `order`.

virtual	~SBMStructuralModelNodeBond ()
	Destructs the bond.

bool	hasStatusBit () const
	Returns true when the bond's status bit is set.

std::string const &	getStatusBit () const
	Returns the bond's status bit.

void	setStatusBit (const std::string &statusBit)
	Sets the bond's status bit.

void	clearStatusBit ()
	Clears the bond's status bit.

bool	hasCustomType () const
	Returns true when the bond's custom type is set.

int const &	getCustomType () const
	Returns the bond's custom type.

void	setCustomType (const int &water)
	Sets the bond's custom type.

void	clearCustomType ()
	Clears the bond's custom type.

bool	isAmideBond () const
	Returns true if the bond is an amide bond, i.e. between a Nitrogen and a carbonyl Carbon: N-C=O.

bool	isPrimaryAmideBond () const
	Returns true if the bond is a primary amide bond, i.e. an amid bond where the Nitrogen atom has exactly one non-Hydrogen bond.

bool	isSecondaryAmideBond () const
	Returns true if the bond is a secondary amide bond, i.e. an amid bond where the Nitrogen atom has exactly two non-Hydrogen bonds.

bool	isTertiaryAmideBond () const
	Returns true if the bond is a tertiary amide bond, i.e. an amid bond where the Nitrogen atom has exactly three non-Hydrogen bonds.

bool	isCarbonylBond () const
	Returns true if the bond is a carbonyl bond (C=O)

bool	isEsterBond () const
	Returns true if the bond is an ester bond, i.e. between an Oxygen and a carbonyl Carbon: O-C=O.

	SB_NODE_GETTER_0 (, SBQuantity::dimensionless, GetOrder)

	SB_NODE_GETTER_0 (, SBMStructuralModelNodeBond::BondType, GetBondType)

	SB_NODE_GETTER_0 (, SBMStructuralModelNodeAtom *, GetLeftAtom)

	SB_NODE_GETTER_0 (, SBMStructuralModelNodeAtom *, GetRightAtom)

	SB_NODE_GETTER_0 (, SBQuantity::length, GetLength)

	SB_NODE_GETTER_0 (, SBPosition3, GetMidPoint)

	SB_NODE_GETTER_0 (, std::string, GetStatusBit)

	SB_NODE_GETTER_0 (, int, GetCustomType)

	SB_NODE_PREDICATE_0 (, HasStatusBit)

	SB_NODE_PREDICATE_0 (, HasCustomType)

	SB_NODE_PREDICATE_1 (, IsLinkingElementType, SBMElement::Type)

	SB_DECLARE_DATA (SBMStructuralModelNodeBond)

Public Member Functions inherited from SBMStructuralModelNode
virtual	~SBMStructuralModelNode ()

virtual SBPointerList< SBMStructuralModelNode > const *	getChildren () const
	Returns the list of child nodes.

SBMStructuralModelNode *	getNextStructuralNode () const

SBMStructuralModelNode *	getPreviousStructuralNode () const

virtual bool	isLocked () const override
	Returns whether the node is locked (because of the model)

virtual bool	getLockedFlag () const override
	Returns the locked flag of the model.

SBMStructuralModel *	getModel () const

virtual unsigned int	getOpacity () const override
	Returns the opacity.

virtual unsigned int	getMinimumOpacity () const override
	Returns the minimum opacity.

virtual unsigned int	getTransparency () const override
	Returns the transparency.

virtual unsigned int	getMaximumTransparency () const override
	Returns the maximum transparency.

bool	getStructuralSignalFlag () const
	Returns true when the node can send structural signals.

void	setStructuralSignalFlag (bool structuralSignalFlag)
	Sets whether the node can send structural signals.

void	connectStructuralSignalToSlot (SBCReferenceTarget referenceTarget, void(SBCReferenceTarget::functionPointer)(SBStructuralEvent ), SBStructuralEvent::Type eventType=SBStructuralEvent::Type::Any, SBCReferenceTarget nextReferenceTarget=0, void(SBCReferenceTarget::nextFunctionPointer)(SBStructuralEvent )=0)

bool	structuralSignalIsConnectedToSlot (SBCReferenceTarget referenceTarget, void(SBCReferenceTarget::functionPointer)(SBStructuralEvent *), SBStructuralEvent::Type eventType=SBStructuralEvent::Type::Any) const

void	disconnectStructuralSignalFromSlot (SBCReferenceTarget referenceTarget, void(SBCReferenceTarget::functionPointer)(SBStructuralEvent *), SBStructuralEvent::Type eventType=SBStructuralEvent::Type::Any)

void	getAllStructuralNodesBreadthFirstTopDown (std::vector< SBMStructuralModelNode * > &nodeIndexer)

void	getInternalStructuralNodesBreadthFirstTopDown (std::vector< SBMStructuralModelNode * > &nodeIndexer)

void	getLeafStructuralNodesBreadthFirstTopDown (std::vector< SBMStructuralModelNode * > &nodeIndexer)

void	getStructuralNodesBreadthFirstTopDown (std::vector< SBMStructuralModelNode * > &nodeIndexer, bool(selectionRule)(SBMStructuralModelNode ))

void	getAllStructuralNodesBreadthFirstBottomUp (std::vector< SBMStructuralModelNode * > &nodeIndexer)

void	getInternalStructuralNodesBreadthFirstBottomUp (std::vector< SBMStructuralModelNode * > &nodeIndexer)

void	getLeafStructuralNodesBreadthFirstBottomUp (std::vector< SBMStructuralModelNode * > &nodeIndexer)

void	getStructuralNodesBreadthFirstBottomUp (std::vector< SBMStructuralModelNode * > &nodeIndexer, bool(selectionRule)(SBMStructuralModelNode ))

void	getAllStructuralNodesDepthFirst (std::vector< SBMStructuralModelNode * > &nodeIndexer)

void	getInternalStructuralNodesDepthFirst (std::vector< SBMStructuralModelNode * > &nodeIndexer)

void	getLeafStructuralNodesDepthFirst (std::vector< SBMStructuralModelNode * > &nodeIndexer)

void	getStructuralNodesDepthFirst (std::vector< SBMStructuralModelNode * > &nodeIndexer, bool(selectionRule)(SBMStructuralModelNode ))

void	getStructuralNodesBreadthFirst (std::vector< SBMStructuralModelNode * > &nodeVectorTopDown, std::vector< SBMStructuralModelNode * > &nodeVectorBottomUp, bool(selectionRule)(SBMStructuralModelNode ))

virtual void	forEachNodeDepthFirst (void(action)(SBDDataGraphNode node)) override
	Performs an action on each node.

virtual void	forEachNodeDepthFirst (SBCClass object, void(SBCClass::action)(SBDDataGraphNode *node)) override
	Performs an action on each node.

void	forEachStructuralNodeBreadthFirst (void(action)(SBMStructuralModelNode node))

void	forEachStructuralNodeDepthFirst (void(action)(SBMStructuralModelNode node))

void	forEachStructuralNodeBreadthFirst (SBCClass object, void(SBCClass::action)(SBMStructuralModelNode *node))

void	forEachStructuralNodeDepthFirst (SBCClass object, void(SBCClass::action)(SBMStructuralModelNode *node))

	SB_DECLARE_DATA (SBMStructuralModelNode)

Public Member Functions inherited from SBMModelNode
	SB_DECLARE_DATA (SBMModelNode)

Public Member Functions inherited from SBDDataGraphNode
SBDDataGraphNode *	getParent () const
	Returns the parent of the node.

SBDDataGraphNode *	getThisNode () const
	Returns the pointer to this node.

SBDDataGraphNode *	getNextNode () const
	Returns the pointer to the next node in the children of the node's parent.

SBDDataGraphNode *	getPreviousNode () const
	Returns the pointer to the previous node in the children of the node's parent.

SBDDataGraphNode *	getNextNode (SBDDataGraphNode::Type nodeType) const
	Returns the pointer to the next node with type `nodeType` in the children of the node's parent.

SBDDataGraphNode *	getPreviousNode (SBDDataGraphNode::Type nodeType) const
	Returns the pointer to the previous node with type `nodeType` in the children of the node's parent.

SBDDocument *	getDocument () const
	Returns the document the node belongs to.

virtual bool	canAddChild (const SBDDataGraphNode node, const SBDDataGraphNode nextNode=nullptr) const
	Returns whether this node can add `node` as a child.

virtual bool	canAddChildType (SBDDataGraphNode::Type nodeType) const
	Returns whether this node can add a node with type `nodeType` as a child.

virtual bool	canHaveDescendantType (SBDDataGraphNode::Type nodeType) const
	Returns whether this node can have a node with type `nodeType` as a descendant.

virtual bool	addChild (SBDDataGraphNode node, SBDDataGraphNode nextNode=nullptr)
	Adds a child to the node.

virtual bool	removeChild (SBDDataGraphNode *node)
	Removes a child from the node.

bool	hasOneOf (const SBNodeIndexer &nodeIndexer) const
	Returns true if and only if this node is one of the nodes of the `nodeIndexer`, or is the ancestor of one of them, or is a group that stores one of them.

bool	descendsFrom (const SBDDataGraphNode *node) const
	Returns true if and only if this node is `node`, or descends from it.

bool	descendsFrom (const SBNodeIndexer &nodeIndexer) const
	Returns true if and only if this node is one of the nodes of the `nodeIndexer`, or descends from one of them.

bool	descendsFrom (SBPointerIndexer< SBDDataGraphNode > *nodePointerIndexer) const
	Returns true if and only if this node is one of the nodes of the `nodePointerIndexer`, or descends from one of them.

bool	isIn (const SBDDataGraphNode *node) const
	Returns true if and only if this node is `node`, or descends from it, or belongs to a group stored in `node`.

bool	isIn (const SBNodeIndexer &nodeIndexer) const
	Returns true if and only if this node is one of the nodes of the `nodeIndexer`, or descends from one of them, or belongs to a group stored in one of the nodes of the `nodeIndexer`.

bool	isIn (SBPointerIndexer< SBDDataGraphNode > *nodePointerIndexer) const
	Returns true if and only if this node is one of the nodes of the `nodePointerIndexer`, or descends from one of them, or belongs to a group stored in of the nodes of the `nodePointerIndexer`.

bool	isOneOf (const SBNodeIndexer &nodeIndexer) const
	Returns true if and only if this node is one of the nodes of the `nodeIndexer`.

bool	isOneOf (SBPointerIndexer< SBDDataGraphNode > *nodePointerIndexer) const
	Returns true if and only if this node is one of the nodes of the `nodePointerIndexer`.

SBDDataGraphNode *	getRoot () const
	Returns the root of the hierarchy the node belongs to.

unsigned int	getNodeIndex () const
	Returns the node index (unique in the whole data graph, but non-persistent)

std::string	getTypeString (bool humanReadable=false) const
	Returns a string describing the type of the data graph node.

virtual std::string const &	getName () const
	Returns the name of the node.

virtual void	setName (const std::string &name)
	Sets the name of the node.

bool	isType (Type type) const
	Returns true when the type of the node corresponds to `type`.

bool	isModel () const
	Returns true when the node is a model.

bool	isAtom () const
	Returns true when the node is an atom.

bool	isBond () const
	Returns true when the node is a bond.

bool	isStructuralNode () const
	Returns true when the node is a structural node.

bool	isStructuralModel () const
	Returns true when the node is a structural model.

bool	isVisualModel () const
	Returns true when the node is a visual model.

bool	isDynamicalModel () const
	Returns true when the node is a dynamical model.

bool	isInteractionModel () const
	Returns true when the node is a interaction model.

bool	isPropertyModel () const
	Returns true when the node is a property model.

bool	isMesh () const
	Returns true when the node is a mesh.

bool	isLight () const
	Returns true when the node is a light.

bool	isSimulator () const
	Returns true when the node is a simulator.

bool	isBallAndStick () const
	Returns true when the node is the default ball-and-stick visual model.

bool	isLicorice () const
	Returns true when the node is the default licorice visual model.

bool	isVanDerWaals () const
	Returns true when the node is the default van der Waals visual model.

bool	isCartoon () const
	Returns true when the node is the default cartoon visual model.

bool	isRibbon () const
	Returns true when the node is the default ribbon visual model.

bool	isTube () const
	Returns true when the node is the default tube visual model.

bool	isGaussianSurface () const
	Returns true when the node is the default Gaussian surface visual model.

bool	isSolventAccessibleSurface () const
	Returns true when the node is the default solvent accessible surface visual model.

bool	isSolventExcludedSurface () const
	Returns true when the node is the default solvent excluded surface visual model.

virtual void	setLockedFlag (bool flag)
	Sets the locked flag.

bool	isCreated () const
	Returns true if and only if the node is created.

void	create ()
	Creates the node.

bool	isErased () const
	Returns true if and only if the node is erased.

void	erase ()
	Erases the node.

virtual unsigned int	getFlags () const
	Returns the flags.

virtual unsigned int	getInheritedFlags () const
	Returns the inherited flags.

bool	isSelected () const
	Returns whether the node is selected.

bool	getSelected () const
	Returns whether the node is selected.

bool	getSelectionFlag () const
	Returns the selection flag.

void	setSelectionFlag (bool flag)
	Sets the selection flag.

bool	isVisible () const
	Returns whether the node is visible.

bool	getVisible () const
	Returns whether the node is visible.

bool	getVisibilityFlag () const
	Returns the visibility flag.

void	setVisibilityFlag (bool flag)
	Sets the visibility flag.

bool	isHighlighted () const
	Returns whether the node is highlighted.

bool	getHighlightingFlag () const
	Returns the highlighting flag.

void	setHighlightingFlag (bool flag)
	Sets the highlighting flag.

virtual void	display (RenderingPass renderingPass)
	Displays the node.

virtual void	display ()
	Displays the node (deprecated)

virtual void	displayForShadow ()
	Displays the node for shadowing purposes (deprecated)

virtual void	displayForSelection ()
	Displays the node for selection purposes (deprecated)

virtual void	setOpacity (unsigned int opacity)
	Sets the opacity.

virtual bool	hasOpacityRange () const
	Returns whether the node has the opacity range.

virtual unsigned int	getDefaultOpacity () const
	Returns the default opacity.

virtual unsigned int	getMaximumOpacity () const
	Returns the maximum opacity.

virtual unsigned int	getOpacitySingleStep () const
	Returns the opacity single step.

virtual std::string	getOpacitySuffix () const
	Returns the opacity suffix.

virtual void	setTransparency (unsigned int transparency)
	Sets the transparency.

virtual bool	hasTransparencyRange () const
	Returns whether the node has the transparency range.

virtual unsigned int	getDefaultTransparency () const
	Returns the default transparency.

virtual unsigned int	getMinimumTransparency () const
	Returns the minimum transparency.

virtual unsigned int	getTransparencySingleStep () const
	Returns the transparency single step.

virtual std::string	getTransparencySuffix () const
	Returns the transparency suffix.

float	getInheritedOpacity () const
	Returns the cumulative opacity, when taking into account the ascendants.

float	getInheritedTransparency () const
	Returns the cumulative transparency, when taking into account the ascendants.

bool	canAddMaterial () const
	Returns whether can add a material to the node based on its type.

bool	addMaterial (SBDDataGraphNodeMaterial *material)
	Adds a material.

bool	removeMaterial ()
	Removes the material.

void	removeMaterialsFromDescendants ()
	Removes materials from all nodes that descend from this node, but it does not remove the material from the node itself.

bool	hasMaterial () const
	Returns whether the node has a material (by itself, or inherited)

bool	ownsMaterial () const
	Returns whether the node owns a material.

SBDDataGraphNodeMaterial *	getMaterial () const
	Returns the material.

SBDDataGraphNode *	getMaterialOwner () const
	Returns the node whose material is inherited.

void	connectBaseSignalToSlot (SBCReferenceTarget referenceTarget, void(SBCReferenceTarget::functionPointer)(SBBaseEvent ), SBCReferenceTarget nextReferenceTarget=0, void(SBCReferenceTarget::nextFunctionPointer)(SBBaseEvent )=0)
	Connects the base signal to a slot.

bool	baseSignalIsConnectedToSlot (SBCReferenceTarget referenceTarget, void(SBCReferenceTarget::functionPointer)(SBBaseEvent *)) const
	Returns true when the base signal is connected to a slot.

void	disconnectBaseSignalFromSlot (SBCReferenceTarget referenceTarget, void(SBCReferenceTarget::functionPointer)(SBBaseEvent *))
	Disconnects the base signal from a slot.

unsigned int	countNodes (SBDDataGraphNode::Type nodeType, bool selectedNodesOnly=false, const SBNodePredicate &visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const
	Counts nodes based on a `nodeType`, a selection status and a `visitPredicate`, with or without dependencies.

unsigned int	countNodes (const SBNodePredicate &selectionPredicate=SBDDataGraphNode::All(), const SBNodePredicate &visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const
	Counts nodes based on a `selectionPredicate` and a `visitPredicate`, with or without dependencies.

virtual std::string	getHierarchyString (const std::string &separator=" / ", bool includeNodeType=false) const
	Returns a string with hierarchical information on the node and its parents names.

virtual unsigned int	getNumberOfChains ()
	Returns the number of chains.

virtual unsigned int	getNumberOfMolecules ()
	Returns the number of molecules.

virtual unsigned int	getNumberOfResidues ()
	Returns the number of residues.

virtual unsigned int	getNumberOfSegments ()
	Returns the number of segments.

virtual unsigned int	getNumberOfStructuralGroups ()
	Returns the number of structural groups.

virtual unsigned int	getNumberOfStructuralModels ()
	Returns the number of structural models.

virtual unsigned int	getNumberOfAtoms ()
	Returns the number of atoms.

virtual unsigned int	getNumberOfCarbons ()
	Returns the number of carbons.

virtual unsigned int	getNumberOfHydrogens ()
	Returns the number of hydrogens.

virtual unsigned int	getNumberOfNitrogens ()
	Returns the number of nitrogens.

virtual unsigned int	getNumberOfOxygens ()
	Returns the number of oxygens.

virtual unsigned int	getNumberOfSulfurs ()
	Returns the number of sulfurs.

virtual unsigned int	getNumberOfCoarseGrainedAtoms ()
	Returns the number of coarse-grained atoms.

virtual unsigned int	getNumberOfOtherAtoms ()
	Returns the number of other atoms.

virtual int	getSumOfFormalCharges ()
	Returns the sum of formal charges.

virtual float	getSumOfPartialCharges ()
	Returns the sum of partial charges.

virtual SBQuantity::mass	getMolecularWeight ()
	Returns the molecular weight.

	SB_DECLARE_DATA (SBDDataGraphNode)

Public Member Functions inherited from SBCReferenceTarget
unsigned int	getMemoryFootprint () const

void	printReferencesToOwners () const

	SBCReferenceTarget ()

virtual	~SBCReferenceTarget ()

Static Public Member Functions inherited from SBMStructuralModelNodeBond
static std::string	getBondTypeString (BondType bondType)
	Returns the string corresponding to the `bondType`.

Static Public Member Functions inherited from SBMStructuralModelNode
static void	forEachStructuralNodeInSelection (std::vector< SBMStructuralModelNode * > &selection, void(action)(SBMStructuralModelNode node))

static void	forEachStructuralNodeInSelection (std::vector< SBMStructuralModelNode * > &selection, SBCClass object, void(SBCClass::action)(SBMStructuralModelNode *node))

Static Public Member Functions inherited from SBDDataGraphNode
static void	clone (const SBNodeIndexer &sourceNodeIndexer, SBNodeIndexer &destinationNodeIndexer)
	Clones the nodes in `sourceNodeIndexer` (treated as a whole) and places the clones in `destinationNodeIndexer`.

static SBDDataGraphNode *	getNode (unsigned int nodeIndex)
	Returns the unique node corresponding to the node index `nodeIndex`.

static std::string	getTypeString (Type type, bool humanReadable=false)
	Returns a string describing the type of the data graph node.

static bool	canAddMaterial (SBDDataGraphNode::Type nodeType)
	Returns whether can add a material to a node of type `nodeType`.

static void	forEachNodeInSelection (SBNodeIndexer &nodeIndexer, void(action)(SBDDataGraphNode node))
	Performs an action for each node in a selection.

static void	forEachNodeInSelection (SBNodeIndexer &nodeIndexer, SBCClass object, void(SBCClass::action)(SBDDataGraphNode *node))
	Performs an action for each node in a selection.

Protected Member Functions inherited from SBMStructuralModelNodeBond
	SBMStructuralModelNodeBond (SBMStructuralModelNodeBondData *dataPointer)
	Builds a bond.

Protected Member Functions inherited from SBMStructuralModelNode
	SBMStructuralModelNode ()
	Builds a structural model node.

	SBMStructuralModelNode (SBMStructuralModelNodeData *dataPointer)
	Builds a structural model node.

Protected Member Functions inherited from SBMModelNode
	SBMModelNode ()
	Builds a base object.

	SBMModelNode (SBMModelNodeData *dataPointer)
	Builds a base object.

virtual	~SBMModelNode ()

Protected Member Functions inherited from SBDDataGraphNode
	SBDDataGraphNode ()
	Builds a data graph node.

	SBDDataGraphNode (SBDDataGraphNodeData *dataPointer)
	Builds a data graph node.

virtual	~SBDDataGraphNode ()
	Destroys the node.

Protected Member Functions inherited from SBCReferenceTarget
void	removeAllReferenceOwners ()

	SBCReferenceTarget (SBCReferenceTargetData *dataPointer)

Protected Attributes inherited from SBCReferenceTarget
SBCReferenceTargetData *	dataPointer

Member Function Documentation

◆ clone()

SBMStructuralModelNodeHydrogenBond * SBMStructuralModelNodeHydrogenBond::clone ( )

overridevirtual

Reimplemented from SBMStructuralModelNodeBond.

◆ getNodes() [1/2]

void SBMStructuralModelNodeHydrogenBond::getNodes	(	SBNodeIndexer &	nodeIndexer,
		const SBNodePredicate &	selectionPredicate = `SBDDataGraphNode::All()`,
		const SBNodePredicate &	visitPredicate = `SBDDataGraphNode::All()`,
		bool	includeDependencies = `false`
	)		const

overridevirtual

This function adds to nodeIndexer the hydrogen bond itself (if the predicates are valid) and, if includeDependencies is true, attempts to add the bonded atoms as well.

Reimplemented from SBMStructuralModelNodeBond.

◆ getNodes() [2/2]

void SBMStructuralModelNodeHydrogenBond::getNodes	(	SBNodeIndexer &	nodeIndexer,
		SBNode::Type	nodeType,
		bool	selectedNodesOnly = `false`,
		const SBNodePredicate &	visitPredicate = `SBDDataGraphNode::All()`,
		bool	includeDependencies = `false`
	)		const

overridevirtual

This function adds to nodeIndexer the hydrogen bond itself (if the predicates are valid) and, if includeDependencies is true, attempts to add the bonded atoms as well.

Reimplemented from SBMStructuralModelNodeBond.

◆ getType()

SBDDataGraphNode::Type SBMStructuralModelNodeHydrogenBond::getType ( ) const

overridevirtual

Reimplemented from SBMStructuralModelNodeBond.

◆ hasNode() [1/2]

bool SBMStructuralModelNodeHydrogenBond::hasNode	(	const SBNodePredicate &	selectionPredicate = `SBDDataGraphNode::All()`,
		const SBNodePredicate &	visitPredicate = `SBDDataGraphNode::All()`,
		bool	includeDependencies = `false`
	)		const

overridevirtual

This function checks the bond itself (if the predicates are valid) and, if includeDependencies is true, checks the bonded atoms as well.

Reimplemented from SBMStructuralModelNodeBond.

◆ hasNode() [2/2]

bool SBMStructuralModelNodeHydrogenBond::hasNode	(	SBNode::Type	nodeType,
		bool	selectedNodesOnly = `false`,
		const SBNodePredicate &	visitPredicate = `SBDDataGraphNode::All()`,
		bool	includeDependencies = `false`
	)		const

overridevirtual

This function checks the bond itself (if the predicates are valid) and, if includeDependencies is true, checks the bonded atoms as well.

Reimplemented from SBMStructuralModelNodeBond.

◆ isSerializable()

bool SBMStructuralModelNodeHydrogenBond::isSerializable ( ) const

overridevirtual

Reimplemented from SBMStructuralModelNodeBond.

◆ print()

void SBMStructuralModelNodeHydrogenBond::print ( unsigned int offset = 0 ) const

overridevirtual

Reimplemented from SBMStructuralModelNodeBond.

◆ serialize()

void SBMStructuralModelNodeHydrogenBond::serialize	(	SBCSerializer *	serializer,
		const SBNodeIndexer &	nodeIndexer,
		const SBVersionNumber &	sdkVersionNumber = `SB_SDK_VERSION_NUMBER`,
		const SBVersionNumber &	classVersionNumber = `SBVersionNumber(1, 0, 0)`
	)		const

overridevirtual

Reimplemented from SBMStructuralModelNodeBond.

◆ unserialize()

void SBMStructuralModelNodeHydrogenBond::unserialize	(	SBCSerializer *	serializer,
		const SBNodeIndexer &	nodeIndexer,
		const SBVersionNumber &	sdkVersionNumber = `SB_SDK_VERSION_NUMBER`,
		const SBVersionNumber &	classVersionNumber = `SBVersionNumber(1, 0, 0)`
	)

overridevirtual

Reimplemented from SBMStructuralModelNodeBond.

Constructors and destructors

Serialization

Selection

Topology

Identity

Selection functions

Debugging

Additional Inherited Members

Member Function Documentation

◆ clone()

◆ getNodes() [1/2]

◆ getNodes() [2/2]

◆ getType()

◆ hasNode() [1/2]

◆ hasNode() [2/2]

◆ isSerializable()

◆ print()

◆ serialize()

◆ unserialize()