SAMSON Python Scripting
4.0.3
Table of Contents
Facade Library Group
DataModel Library Group
Modeling Library Group
Simulation Library Group
GUI Library Group
Core Library Group
Changelog
All versions
SAMSON Connect
Documentation
Scripting guide
Forum
Blog
Extensions
Download SAMSON
SAMSON Python Scripting
Docs
»
Index
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Y
|
Z
|
С
_
__add__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__eq__() (samson.Core.Container.UserPlan method)
(samson.Core.Container.UserPlan.Type method)
(samson.Core.Container.UUID method)
(samson.Core.Container.VersionNumber method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.spatialDomain method)
(samson.DataModel.Type.spatialTransform method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__ge__() (samson.Core.Container.VersionNumber method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__gt__() (samson.Core.Container.VersionNumber method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__iadd__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__imul__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__isub__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__itruediv__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__le__() (samson.Core.Container.VersionNumber method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__lt__() (samson.Core.Container.UserPlan method)
(samson.Core.Container.UUID method)
(samson.Core.Container.VersionNumber method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__mul__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialTransform method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__ne__() (samson.Core.Container.UserPlan method)
(samson.Core.Container.UserPlan.Type method)
(samson.Core.Container.UUID method)
(samson.Core.Container.VersionNumber method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.spatialDomain method)
(samson.DataModel.Type.spatialTransform method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__neg__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__radd__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
__rmul__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__rsub__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
__rtruediv__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
__sub__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__truediv__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
A
A (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
a0 (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
aA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Ac (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
acceleration (class in samson.DataModel.Quantity)
acceleration3 (class in samson.DataModel.Type)
acceleration6 (class in samson.DataModel.Type)
accelerationInterval (class in samson.DataModel.Type)
accelerationInterval3 (class in samson.DataModel.Type)
acd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
AcidicPolar (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainPolarity attribute)
acos() (in module samson.DataModel.Quantity)
Actinide (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
Actinium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Action (class in samson.GUI.Action)
activityFlag (samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
add() (samson.Modeling.StructuralModel.Path method)
addChild() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
addGroupNodesToSelection() (samson.DataModel.Document.Document method)
addHydrogens() (samson.Modeling.StructuralModel.Atom method)
addHydrogensByResidueType() (samson.Modeling.StructuralModel.Residue method)
addKeyframe() (samson.DataModel.Document.Animation method)
addNode() (samson.DataModel.DataGraph.NodeIndexer method)
addNodeToSelection() (samson.DataModel.Document.Document method)
addParticle() (samson.Modeling.DynamicalModel.ParticleSystem method)
addStructuralParticle() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
addVisualPreset() (samson.DataModel.Visualization.VisualPresetGroup method)
ag (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Ag (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
aK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Al (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ALA (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
alignWithAxis() (samson.DataModel.Document.Camera method)
alignWithPlane() (samson.DataModel.Document.Camera method)
AlkaliMetal (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
AlkalineEarthMetal (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
alpha (samson.DataModel.Type.Color property)
Alpha (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SecondaryStructureType attribute)
alphaInt (samson.DataModel.Type.Color property)
alternateLocation (samson.Modeling.StructuralModel.Atom property)
Aluminium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
am (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Am (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Americium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Amide (samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
aminoAcidOneLetterCode (samson.Modeling.StructuralModel.Residue property)
amol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
amountOfSubstance (class in samson.DataModel.Quantity)
ampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
angstrom (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
angularAcceleration (class in samson.DataModel.Quantity)
angularAcceleration3 (class in samson.DataModel.Type)
angularVelocity (class in samson.DataModel.Quantity)
angularVelocity3 (class in samson.DataModel.Type)
Animation (class in samson.DataModel.Document)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Animation.Category (class in samson.DataModel.Document)
Animation.NodeType (class in samson.DataModel.Document)
AnimationFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
animationFlag (samson.Modeling.StructuralModel.Path property)
animationType (samson.Modeling.StructuralModel.Path property)
anisotropicTFactors (samson.Modeling.StructuralModel.Atom property)
Antimony (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
App (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
apply() (samson.DataModel.Visualization.VisualPreset method)
(samson.DataModel.Visualization.VisualPresetGroup method)
Ar (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
area (class in samson.DataModel.Quantity)
area() (samson.DataModel.Type.intervalVector3 method)
areNeighbors() (samson.Modeling.StructuralModel.Grid method)
(samson.Simulation.NeighborSearch.ParticleSystem method)
(samson.Simulation.NeighborSearch.ParticleSystemGrid method)
ARG (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Argon (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Aromatic (samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
aromaticity (samson.Modeling.StructuralModel.Atom property)
Arsenic (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ArticulatedBody (class in samson.Modeling.DynamicalModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
ArticulatedBody.NodeType (class in samson.Modeling.DynamicalModel)
ArticulatedBodySystem (class in samson.Modeling.DynamicalModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
ArticulatedBodySystem.NodeType (class in samson.Modeling.DynamicalModel)
as (samson.DataModel.Quantity.unitsSI property)
As (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
asin() (in module samson.DataModel.Quantity)
askUser() (in module samson.Facade.SAMSON)
ASN (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
ASP (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
aspectRatio (samson.DataModel.Document.Camera property)
Assembly (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Asset (class in samson.DataModel.Asset)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Asset.NodeType (class in samson.DataModel.Asset)
assetFileName (samson.DataModel.Asset.Asset property)
AssetLibrary (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
Astatine (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ASX (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
At (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
atan() (in module samson.DataModel.Quantity)
Atom (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Atom.Geometry (class in samson.Modeling.StructuralModel)
Atom.Hybridization (class in samson.Modeling.StructuralModel)
Atom.NodeType (class in samson.Modeling.StructuralModel)
atomicWeight (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
attoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
attocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
attogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
attokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
attometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
attomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
attosecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Au (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
auAction (class in samson.DataModel.Quantity)
auCharge (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
auCoulombConstant (class in samson.DataModel.Quantity)
auMass (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsDalton property)
(samson.DataModel.Quantity.unitsSI property)
auTime (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
avogadroConstant (samson.DataModel.Type.constant attribute)
ax (samson.DataModel.Type.vector6 property)
ay (samson.DataModel.Type.vector6 property)
az (samson.DataModel.Type.vector6 property)
B
B (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Ba (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Backbone (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Backbone.NodeType (class in samson.Modeling.StructuralModel)
backView() (samson.DataModel.Document.Camera method)
Barium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Base (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
BasicPolar (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainPolarity attribute)
basisX (samson.DataModel.Document.Camera property)
basisY (samson.DataModel.Document.Camera property)
basisZ (samson.DataModel.Document.Camera property)
Be (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
becquerel (class in samson.DataModel.Quantity)
beginFrame (samson.DataModel.Document.Presentation property)
beginHolding() (in module samson.Facade.SAMSON)
beginKeyframe (samson.DataModel.Document.Animation property)
Bent (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Berkelium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Beryllium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Beta (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SecondaryStructureType attribute)
Bh (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Bi (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
BicappedTrigonalPrismatic (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Biology (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Bismuth (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Bk (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
black (samson.DataModel.Type.Color attribute)
block (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
blue (samson.DataModel.Type.Color attribute)
blueInt (samson.DataModel.Type.Color property)
bohr (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Bohrium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
boltzmannConstant (samson.DataModel.Type.constant attribute)
Bond (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Bond.BondType (class in samson.Modeling.StructuralModel)
Bond.NodeType (class in samson.Modeling.StructuralModel)
bondExists() (samson.Modeling.StructuralModel.StructuralModel static method)
bondType (samson.Modeling.StructuralModel.Bond property)
bondTypeString (samson.Modeling.StructuralModel.Bond property)
Boron (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
bottomView() (samson.DataModel.Document.Camera method)
Bounce (samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.AnimationType attribute)
bound() (samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
Bq (class in samson.DataModel.Quantity)
Br (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Bromine (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
C
C (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
c (samson.DataModel.Type.constant attribute)
C (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
cA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Ca (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Cadmium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Caesium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Calcium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Californium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Camera (class in samson.DataModel.Document)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.Category attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Camera.NodeType (class in samson.DataModel.Document)
CameraAnimation (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
canAddChild() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
canAddChildType() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
canAddKeyframe() (samson.DataModel.Document.Animation method)
canAddVisualPreset() (samson.DataModel.Visualization.VisualPresetGroup method)
canCreateMesh() (samson.Modeling.VisualModel.VisualModel method)
candela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
canHaveDescendantType() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
canMoveKeyframe() (samson.DataModel.Document.Animation method)
canRemoveKeyframe() (samson.DataModel.Document.Animation method)
CappedOctahedral (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
CappedSquareAntiprismatic (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
CappedTrigonalPrismatic (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
captureViewport() (in module samson.Facade.SAMSON)
captureViewportToFile() (in module samson.Facade.SAMSON)
Carbon (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
castToInteractionModelParticleSystem() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
castToLabel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
castToMesh() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
castToVisualModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
category (samson.DataModel.Document.Animation property)
categoryString() (samson.DataModel.Document.Animation method)
ccd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
cd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Cd (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Ce (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ceil() (in module samson.DataModel.Quantity)
center() (samson.DataModel.Document.Camera method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
centerTransform() (samson.Modeling.StructuralModel.StructuralModel method)
centiampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
centicandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
centigram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
centikelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
centimeter (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
centimole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
centisecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Cerium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Cf (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
cg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Chain (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Chain.NodeType (class in samson.Modeling.StructuralModel)
chainID (samson.Modeling.StructuralModel.Atom property)
chainIDString (samson.Modeling.StructuralModel.Atom property)
chainName (samson.Modeling.StructuralModel.Atom property)
changed() (samson.DataModel.Document.Label method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
Chemistry (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Chlorine (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
chroma (samson.DataModel.Color.ColorPaletteQualitative property)
(samson.DataModel.Color.ColorPaletteQualitativeHCL property)
chroma1 (samson.DataModel.Color.ColorPaletteDiverging property)
(samson.DataModel.Color.ColorPaletteDivergingHCL property)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
(samson.DataModel.Color.ColorPaletteSequential property)
(samson.DataModel.Color.ColorPaletteSequentialHCL property)
chroma2 (samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
(samson.DataModel.Color.ColorPaletteSequential property)
(samson.DataModel.Color.ColorPaletteSequentialHCL property)
chroma3 (samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
chromaPower (samson.DataModel.Color.ColorPaletteDiverging property)
(samson.DataModel.Color.ColorPaletteDivergingHCL property)
(samson.DataModel.Color.ColorPaletteSequential property)
(samson.DataModel.Color.ColorPaletteSequentialHCL property)
chromaPower1 (samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
chromaPower2 (samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
Chromium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
CIELabfromCIEXYZ() (samson.DataModel.Type.ColorConversion static method)
CIELabfromCylindricalCIELab() (samson.DataModel.Type.ColorConversion static method)
CIELabfromSRGB() (samson.DataModel.Type.ColorConversion static method)
CIELuvfromCIEXYZ() (samson.DataModel.Type.ColorConversion static method)
CIELuvfromCylindricalCIELuv() (samson.DataModel.Type.ColorConversion static method)
CIEXYZfromCIELab() (samson.DataModel.Type.ColorConversion static method)
CIEXYZfromCIELuv() (samson.DataModel.Type.ColorConversion static method)
CIEXYZfromRGB() (samson.DataModel.Type.ColorConversion static method)
CIEXYZfromSRGB() (samson.DataModel.Type.ColorConversion static method)
cK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Cl (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Class (class in samson.Core.Class)
Class.Category (class in samson.Core.Class)
Class.Type (class in samson.Core.Class)
ClassAttribute (class in samson.Core.Class)
ClassAttribute.Type (class in samson.Core.Class)
ClassInterface (class in samson.Core.Class)
ClassProxy (class in samson.Core.Class)
clear() (samson.DataModel.DataGraph.NodeIndexer method)
clearAltLocation() (samson.Modeling.StructuralModel.Atom method)
clearAnisotropicTFactors() (samson.Modeling.StructuralModel.Atom method)
clearAromaticity() (samson.Modeling.StructuralModel.Atom method)
clearColor() (samson.DataModel.Visualization.VisualPreset method)
clearColorScheme() (samson.DataModel.Visualization.VisualPreset method)
clearComment() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
clearConnectivityAnnotationInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearCrystallographicAndTransformationInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearCustomType() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Bond method)
clearFormalCharge() (samson.Modeling.StructuralModel.Atom method)
clearGeometry() (samson.Modeling.StructuralModel.Atom method)
clearHeterogenInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearHighlighting() (samson.DataModel.Document.Document method)
clearHybridization() (samson.Modeling.StructuralModel.Atom method)
clearInsertionCode() (samson.Modeling.StructuralModel.Atom method)
clearMiscellaneousInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearName() (samson.Modeling.StructuralModel.Atom method)
clearOccupancy() (samson.Modeling.StructuralModel.Atom method)
clearOxidationState() (samson.Modeling.StructuralModel.Atom method)
clearPartialCharge() (samson.Modeling.StructuralModel.Atom method)
clearPrimaryStructureInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearRecordType() (samson.Modeling.StructuralModel.Atom method)
clearResonance() (samson.Modeling.StructuralModel.Atom method)
clearSecondaryStructureInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearSelection() (samson.DataModel.Document.Document method)
clearSelector() (samson.DataModel.Visualization.VisualPreset method)
clearSerialNumber() (samson.Modeling.StructuralModel.Atom method)
clearStatusBit() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
clearStructuralID() (samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
clearSYBYLType() (samson.Modeling.StructuralModel.Atom method)
clearTemperatureFactor() (samson.Modeling.StructuralModel.Atom method)
clearTitleInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearVisualModel() (samson.DataModel.Visualization.VisualPreset method)
clearWaterFlag() (samson.Modeling.StructuralModel.Atom method)
clippingPlane (samson.DataModel.Document.Camera property)
clone() (samson.DataModel.Asset.Asset method)
(samson.DataModel.Color.ColorPalette method)
(samson.DataModel.Color.ColorPaletteDiverging method)
(samson.DataModel.Color.ColorPaletteDivergingHCL method)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL method)
(samson.DataModel.Color.ColorPaletteQualitative method)
(samson.DataModel.Color.ColorPaletteQualitativeHCL method)
(samson.DataModel.Color.ColorPaletteSequential method)
(samson.DataModel.Color.ColorPaletteSequentialHCL method)
(samson.DataModel.Color.ColorSchemeConstant method)
(samson.DataModel.Color.ColorSchemeConstantIllustrate method)
(samson.DataModel.Color.ColorSchemeCPK method)
(samson.DataModel.Color.ColorSchemePerAttribute_dimensionless method)
(samson.DataModel.Color.ColorSchemePerAttribute_double method)
(samson.DataModel.Color.ColorSchemePerAttribute_float method)
(samson.DataModel.Color.ColorSchemePerAttribute_int method)
(samson.DataModel.Color.ColorSchemePerChainID method)
(samson.DataModel.Color.ColorSchemePerChainIllustrate method)
(samson.DataModel.Color.ColorSchemePerFormalCharge method)
(samson.DataModel.Color.ColorSchemePerOccupancy method)
(samson.DataModel.Color.ColorSchemePerPartialCharge method)
(samson.DataModel.Color.ColorSchemePerResidueHydrophobicity method)
(samson.DataModel.Color.ColorSchemePerResidueSequenceNumber method)
(samson.DataModel.Color.ColorSchemePerResidueType method)
(samson.DataModel.Color.ColorSchemePerSecondaryStructureType method)
(samson.DataModel.Color.ColorSchemePerSideChainCharge method)
(samson.DataModel.Color.ColorSchemePerSideChainPolarity method)
(samson.DataModel.Color.ColorSchemePerTemperatureFactor method)
(samson.DataModel.DataGraph.ColorScheme method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.DataModel.Visualization.VisualPreset method)
(samson.DataModel.Visualization.VisualPresetGroup method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
cm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Cm (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
cmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Cn (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Co (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Cobalt (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
collapseToLowerBound() (samson.DataModel.Type.intervalVector3 method)
collapseToUpperBound() (samson.DataModel.Type.intervalVector3 method)
Color (class in samson.DataModel.Type)
ColorConversion (class in samson.DataModel.Type)
colorCPK (samson.Modeling.Element.Element property)
ColorPalette (class in samson.DataModel.Color)
(samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
ColorPalette.ColorPaletteType (class in samson.DataModel.Color)
ColorPaletteDefaultPalette (class in samson.DataModel.Color)
ColorPaletteDiverging (class in samson.DataModel.Color)
ColorPaletteDiverging.ColorPaletteType (class in samson.DataModel.Color)
ColorPaletteDivergingHCL (class in samson.DataModel.Color)
ColorPaletteDivergingHCL.ColorPaletteType (class in samson.DataModel.Color)
ColorPaletteFlexibleDivergingHCL (class in samson.DataModel.Color)
ColorPaletteFlexibleDivergingHCL.ColorPaletteType (class in samson.DataModel.Color)
ColorPaletteQualitative (class in samson.DataModel.Color)
ColorPaletteQualitative.ColorPaletteType (class in samson.DataModel.Color)
ColorPaletteQualitativeHCL (class in samson.DataModel.Color)
ColorPaletteQualitativeHCL.ColorPaletteType (class in samson.DataModel.Color)
ColorPaletteSequential (class in samson.DataModel.Color)
ColorPaletteSequential.ColorPaletteType (class in samson.DataModel.Color)
ColorPaletteSequentialHCL (class in samson.DataModel.Color)
ColorPaletteSequentialHCL.ColorPaletteType (class in samson.DataModel.Color)
ColorScheme (class in samson.DataModel.DataGraph)
(samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
ColorSchemeConstant (class in samson.DataModel.Color)
ColorSchemeConstantIllustrate (class in samson.DataModel.Color)
ColorSchemeCPK (class in samson.DataModel.Color)
ColorSchemePerAttribute_dimensionless (class in samson.DataModel.Color)
ColorSchemePerAttribute_double (class in samson.DataModel.Color)
ColorSchemePerAttribute_float (class in samson.DataModel.Color)
ColorSchemePerAttribute_int (class in samson.DataModel.Color)
ColorSchemePerChainID (class in samson.DataModel.Color)
ColorSchemePerChainIllustrate (class in samson.DataModel.Color)
ColorSchemePerFormalCharge (class in samson.DataModel.Color)
ColorSchemePerOccupancy (class in samson.DataModel.Color)
ColorSchemePerPartialCharge (class in samson.DataModel.Color)
ColorSchemePerResidueHydrophobicity (class in samson.DataModel.Color)
ColorSchemePerResidueSequenceNumber (class in samson.DataModel.Color)
ColorSchemePerResidueType (class in samson.DataModel.Color)
ColorSchemePerSecondaryStructureType (class in samson.DataModel.Color)
ColorSchemePerSideChainCharge (class in samson.DataModel.Color)
ColorSchemePerSideChainPolarity (class in samson.DataModel.Color)
ColorSchemePerTemperatureFactor (class in samson.DataModel.Color)
comment (samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
commentSize (samson.Modeling.StructuralModel.Atom property)
computeAminoAcidChi1Angle() (samson.Modeling.StructuralModel.Residue method)
computeAminoAcidChi2Angle() (samson.Modeling.StructuralModel.Residue method)
computeAminoAcidChi3Angle() (samson.Modeling.StructuralModel.Residue method)
computeAminoAcidChi4Angle() (samson.Modeling.StructuralModel.Residue method)
computeAminoAcidChi5Angle() (samson.Modeling.StructuralModel.Residue method)
computeAminoAcidPhiAngle() (samson.Modeling.StructuralModel.Residue method)
computeAminoAcidPsiAngle() (samson.Modeling.StructuralModel.Residue method)
computeDomain() (samson.Modeling.StructuralModel.StructuralModel static method)
computeEulerDecompositionZYZ() (samson.DataModel.Type.matrix33 method)
computeNucleicAcidAlphaAngle() (samson.Modeling.StructuralModel.Residue method)
computeNucleicAcidBetaAngle() (samson.Modeling.StructuralModel.Residue method)
computeNucleicAcidChiAngle() (samson.Modeling.StructuralModel.Residue method)
computeNucleicAcidDeltaAngle() (samson.Modeling.StructuralModel.Residue method)
computeNucleicAcidEpsilonAngle() (samson.Modeling.StructuralModel.Residue method)
computeNucleicAcidGammaAngle() (samson.Modeling.StructuralModel.Residue method)
computeNucleicAcidZetaAngle() (samson.Modeling.StructuralModel.Residue method)
computeSecondaryStructure() (samson.Modeling.StructuralModel.StructuralModel method)
Conformation (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Conformation.NodeType (class in samson.Modeling.StructuralModel)
connectivityAnnotationInformation (samson.Modeling.StructuralModel.StructuralModel property)
constant (class in samson.DataModel.Type)
contains() (samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
Controller (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
ControllerFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
ControllerNode (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Copernicium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Copper (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
copy() (samson.Modeling.StructuralModel.Path method)
correctDistanceWithPBC() (samson.Modeling.DynamicalModel.ParticleSystem method)
cos() (in module samson.DataModel.Quantity)
cosphi() (samson.DataModel.Type.matrix33 method)
coulomb (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
coulombConstant (samson.DataModel.Type.constant attribute)
coulombPerMeter (class in samson.DataModel.Quantity)
coulombPerSquareMeter (class in samson.DataModel.Quantity)
countNodes() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
covalentRadius (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
CPerM (class in samson.DataModel.Quantity)
CPerM2 (class in samson.DataModel.Quantity)
Cr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
create() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
createBond() (samson.Modeling.StructuralModel.StructuralModel static method)
createColorScheme() (samson.DataModel.Visualization.VisualPreset static method)
createConformation() (samson.Modeling.StructuralModel.Path method)
createConformations() (samson.Modeling.StructuralModel.Path method)
createCovalentBonds() (samson.Modeling.StructuralModel.StructuralModel method)
createCovalentBondsByResidueType() (samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.StructuralModel method)
createGroup() (samson.DataModel.Document.Document method)
createMesh() (samson.Modeling.VisualModel.VisualModel method)
createStructuralModels() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
crystallographicAndTransformationInformation (samson.Modeling.StructuralModel.StructuralModel property)
cs (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Cs (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Cu (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
cubicAm (class in samson.DataModel.Quantity)
cubicAngstrom (class in samson.DataModel.Quantity)
cubicAttometer (class in samson.DataModel.Quantity)
cubicCentimeter (class in samson.DataModel.Quantity)
cubicCm (class in samson.DataModel.Quantity)
cubicDam (class in samson.DataModel.Quantity)
cubicDecameter (class in samson.DataModel.Quantity)
cubicDecimeter (class in samson.DataModel.Quantity)
cubicDistance (class in samson.DataModel.Quantity)
cubicDm (class in samson.DataModel.Quantity)
cubicFemtometer (class in samson.DataModel.Quantity)
cubicFm (class in samson.DataModel.Quantity)
cubicHectometer (class in samson.DataModel.Quantity)
cubicHm (class in samson.DataModel.Quantity)
cubicKilometer (class in samson.DataModel.Quantity)
cubicKm (class in samson.DataModel.Quantity)
cubicLength (class in samson.DataModel.Quantity)
cubicM (class in samson.DataModel.Quantity)
cubicMeter (class in samson.DataModel.Quantity)
cubicMicrometer (class in samson.DataModel.Quantity)
cubicMillimeter (class in samson.DataModel.Quantity)
cubicMm (class in samson.DataModel.Quantity)
cubicNanometer (class in samson.DataModel.Quantity)
cubicNm (class in samson.DataModel.Quantity)
cubicPicometer (class in samson.DataModel.Quantity)
cubicPm (class in samson.DataModel.Quantity)
cubicUm (class in samson.DataModel.Quantity)
cubicYm (class in samson.DataModel.Quantity)
cubicYoctometer (class in samson.DataModel.Quantity)
cubicZeptometer (class in samson.DataModel.Quantity)
cubicZm (class in samson.DataModel.Quantity)
Curium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
currentEnergy (samson.Modeling.StructuralModel.Path property)
currentFrame (samson.DataModel.Document.Presentation property)
currentStep (samson.Modeling.StructuralModel.Path property)
currentTime (samson.Modeling.StructuralModel.Path property)
currentValence (samson.Modeling.StructuralModel.Atom property)
Custom (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Color.ColorPalette attribute)
(samson.DataModel.Color.ColorPalette.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDiverging.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitative.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequential.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL.ColorPaletteType attribute)
customType (samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Bond property)
cyan (samson.DataModel.Type.Color attribute)
CylindricalCIELabfromCIELab() (samson.DataModel.Type.ColorConversion static method)
CylindricalCIELabfromSRGB() (samson.DataModel.Type.ColorConversion static method)
CylindricalCIELuvfromCIELuv() (samson.DataModel.Type.ColorConversion static method)
CylindricalCIELuvfromSRGB() (samson.DataModel.Type.ColorConversion static method)
CYS (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
D
Da (class in samson.DataModel.Quantity)
dA (class in samson.DataModel.Quantity)
Da (samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsDalton property)
(samson.DataModel.Quantity.unitsSI property)
dA (samson.DataModel.Quantity.unitsSI property)
DA (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
daA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
dacd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
dag (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
daK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
dalton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsDalton property)
(samson.DataModel.Quantity.unitsSI property)
dam (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
damol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
darkenSRGBColor() (samson.DataModel.Type.ColorConversion static method)
Darmstadtium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
DataGraphNodeGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Db (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
DC (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
dcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
decaampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
decacandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
decagram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
decakelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
decameter (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
decamole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
deciampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
decicandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
decigram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
decikelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
decimeter (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
decimole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
decisecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
defaultKeyframeColor (samson.DataModel.Type.Color attribute)
defaultOpacity (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
defaultTransparency (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
defaultView() (samson.DataModel.Document.Camera method)
deg (class in samson.DataModel.Quantity)
degPerS (class in samson.DataModel.Quantity)
degree (class in samson.DataModel.Quantity)
degreePerSecond (class in samson.DataModel.Quantity)
DegToRad (samson.DataModel.Type.constant attribute)
deleteVisualPreset() (samson.DataModel.Visualization.VisualPresetGroup method)
descendsFrom() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
description (samson.Core.Class.ClassAttribute property)
(samson.Core.Class.ClassProxy property)
det() (samson.DataModel.Type.matrix33 method)
Developer (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
dg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
DG (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
DI (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
diagonalize() (samson.DataModel.Type.matrix33 method)
diameter() (samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
dimensionless (class in samson.DataModel.Quantity)
dimensionless3 (class in samson.DataModel.Type)
dimensionless33 (class in samson.DataModel.Type)
dimensionless6 (class in samson.DataModel.Type)
dimensionless66 (class in samson.DataModel.Type)
dimensionlessInterval (class in samson.DataModel.Type)
dimensionlessInterval3 (class in samson.DataModel.Type)
disableHolding() (in module samson.Facade.SAMSON)
dissociationConstant1 (samson.Modeling.StructuralModel.Residue property)
dissociationConstant2 (samson.Modeling.StructuralModel.Residue property)
distance (class in samson.DataModel.Quantity)
distance2ToPoint() (samson.DataModel.Type.intervalVector3 method)
Diverging (samson.DataModel.Color.ColorPalette attribute)
(samson.DataModel.Color.ColorPalette.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDiverging.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitative.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequential.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL.ColorPaletteType attribute)
divergingHCLBerlin (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
divergingHCLBlue2Red (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
divergingHCLBlue2Red2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
divergingHCLBlue2Red3 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
dK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
dm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
dmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Document (class in samson.DataModel.Document)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Document.NodeType (class in samson.DataModel.Document)
DocumentManager (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Dodecahedral (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Double (samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
doubleSymmetricPart() (samson.DataModel.Type.matrix66 method)
drawOnTop (samson.DataModel.Document.Label property)
drawOutline (samson.DataModel.Document.Label property)
ds (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Ds (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
DT (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Dubnium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Dummy (samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
Dy (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
DynamicalGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModel (class in samson.Modeling.DynamicalModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModel.NodeType (class in samson.Modeling.DynamicalModel)
DynamicalModelArticulatedBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelNode (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelNodeArticulatedBody (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelNodeGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelNodeParticle (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelNodeRigidBody (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelNodeRoot (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelParticleSystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelParticleSystemFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
DynamicalModelRigidBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
dynamicalModelType (samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
DynamicalNode (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalParticle (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalRoot (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Dysprosium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
E
e (class in samson.DataModel.Quantity)
ec (class in samson.DataModel.Quantity)
Editor (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
Education (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Eh (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsKilocaloriePerMole property)
(samson.DataModel.Quantity.unitsSI property)
Einsteinium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
electricCharge (class in samson.DataModel.Quantity)
electricField (class in samson.DataModel.Quantity)
electronCharge (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
electronDensity (class in samson.DataModel.Quantity)
electronegativity (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
Electronics (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
electronMass (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsDalton property)
(samson.DataModel.Quantity.unitsSI property)
electronvolt (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsKilocaloriePerMole property)
(samson.DataModel.Quantity.unitsSI property)
Element (class in samson.Modeling.Element)
element (samson.Core.Class.ClassProxy property)
Element.ElementType (class in samson.Modeling.Element)
Element.MetalSubcategory (class in samson.Modeling.Element)
elementName (samson.Modeling.StructuralModel.Atom property)
elementSymbol (samson.Modeling.StructuralModel.Atom property)
ElementTable (class in samson.Modeling.Element)
elementType (samson.Modeling.StructuralModel.Atom property)
elementUUID (samson.Core.Class.ClassProxy property)
enableHolding() (in module samson.Facade.SAMSON)
endFrame (samson.DataModel.Document.Presentation property)
endHolding() (in module samson.Facade.SAMSON)
endKeyframe (samson.DataModel.Document.Animation property)
energy (class in samson.DataModel.Quantity)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
energy3 (class in samson.DataModel.Type)
energyInterval (class in samson.DataModel.Type)
energyPerSquareLength (class in samson.DataModel.Quantity)
enforcePeriodicBoundaryConditions() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
Enterprise (samson.Core.Container.UserPlan attribute)
(samson.Core.Container.UserPlan.Type attribute)
Entrance (samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.Category attribute)
EntranceAnimation (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
Er (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
erase() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
Erbium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Es (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Eu (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Europium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
eV (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsKilocaloriePerMole property)
(samson.DataModel.Quantity.unitsSI property)
Exit (samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.Category attribute)
exit() (in module samson.Facade.SAMSON)
ExitAnimation (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
exp() (in module samson.DataModel.Quantity)
expand() (samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
expectedValence (samson.Modeling.StructuralModel.Atom property)
Exporter (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
exportToFile() (in module samson.Facade.SAMSON)
F
F (class in samson.DataModel.Quantity)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
fA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
fabs() (in module samson.DataModel.Quantity)
Factory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
farad (class in samson.DataModel.Quantity)
farPlane (samson.DataModel.Document.Camera property)
favoriteFlag (samson.GUI.Action.Action property)
fcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Fe (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
femtoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
femtocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
femtogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
femtokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
femtometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
femtomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
femtosecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsSI property)
fermi (class in samson.DataModel.Quantity)
Fermium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
fg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
fieldOfViewAngleY (samson.DataModel.Document.Camera property)
fileName (samson.DataModel.Document.Document property)
findAtom() (samson.Modeling.StructuralModel.StructuralModel static method)
fit() (samson.DataModel.Type.intervalVector3 method)
fK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Fl (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Flerovium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
FlexibleDiverging (samson.DataModel.Color.ColorPalette attribute)
(samson.DataModel.Color.ColorPalette.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDiverging.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitative.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequential.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL.ColorPaletteType attribute)
flexibleDivergingHCLArmyRose (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLBrBG (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLCividis (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLEarth (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLFall (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLGeyser (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLPiYG (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLPRGn (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLPuOr (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLRdBu (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLRdGy (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLRdYlBu (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLRdYlGn (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLRoma (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLSpectral (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLTealRose (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLTemps (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLTropic (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
flexibleDivergingHCLZissou1 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
floor() (in module samson.DataModel.Quantity)
Fluorine (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
flushForceBuffer() (samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
flushMomentumBuffer() (samson.Modeling.DynamicalModel.ParticleSystem method)
flushPositionBuffer() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
fm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Fm (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
fmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Folder (class in samson.DataModel.Document)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Folder.NodeType (class in samson.DataModel.Document)
fontString (samson.DataModel.Document.Label property)
force (class in samson.DataModel.Quantity)
force3 (class in samson.DataModel.Type)
force6 (class in samson.DataModel.Type)
forceInterval (class in samson.DataModel.Type)
forceInterval3 (class in samson.DataModel.Type)
forcePerLength (class in samson.DataModel.Quantity)
formalCharge (samson.Modeling.StructuralModel.Atom property)
forwardFlag (samson.Modeling.StructuralModel.Path property)
Fr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Francium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
fromAlignment() (samson.DataModel.Type.matrix33 static method)
fromAxisAngle() (samson.DataModel.Type.matrix33 static method)
fromAxisAnglePi() (samson.DataModel.Type.matrix33 static method)
fromHCL() (samson.DataModel.Type.Color static method)
(samson.DataModel.Type.ColorConversion static method)
fromHSV() (samson.DataModel.Type.Color static method)
(samson.DataModel.Type.ColorConversion static method)
fromLinearInterpolation() (samson.DataModel.Quantity.unitsAU static method)
(samson.DataModel.Quantity.unitsDalton static method)
(samson.DataModel.Quantity.unitsElectronvolt static method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole static method)
(samson.DataModel.Quantity.unitsSI static method)
fromQuaternion() (samson.DataModel.Type.matrix33 static method)
frontView() (samson.DataModel.Document.Camera method)
fs (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsSI property)
G
g (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsDalton property)
(samson.DataModel.Quantity.unitsSI property)
G (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Ga (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Gadolinium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Gallium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Gd (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
GDa (class in samson.DataModel.Quantity)
gDa (samson.DataModel.Quantity.unitsDalton property)
Ge (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
General (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
geometry (samson.Modeling.StructuralModel.Atom property)
geometryString (samson.Modeling.StructuralModel.Atom property)
Germanium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
getAbsLower() (samson.DataModel.Type.interval method)
getAbsUpper() (samson.DataModel.Type.interval method)
getAction() (in module samson.Facade.SAMSON)
getActiveCamera() (in module samson.Facade.SAMSON)
(samson.DataModel.Document.Document method)
getActiveDocument() (in module samson.Facade.SAMSON)
getActiveDocumentFilter() (in module samson.Facade.SAMSON)
getActivePresentation() (samson.DataModel.Document.Document method)
getActiveStructuralModel() (in module samson.Facade.SAMSON)
(samson.DataModel.Document.Document method)
getActivityFlag() (samson.Modeling.DynamicalModel.ParticleSystem method)
getAlphaCarbon() (samson.Modeling.StructuralModel.Backbone method)
getAminoAcidOneLetterCode() (samson.Modeling.StructuralModel.Residue static method)
getAnimationList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getAsphericity() (samson.Modeling.StructuralModel.StructuralModel static method)
getAssetList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getAtom() (in module samson.Facade.SAMSON)
getAtomicWeight() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getAtomRadius() (in module samson.Facade.SAMSON)
getAttribute() (samson.Core.Class.ClassInterface method)
getBackbone() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Residue method)
getBetaCarbon() (samson.Modeling.StructuralModel.SideChain method)
getBlock() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getBond() (in module samson.Facade.SAMSON)
getBondedAtoms() (samson.Modeling.StructuralModel.Atom method)
getBondedHeavyAtoms() (samson.Modeling.StructuralModel.Atom method)
getBondList() (samson.Modeling.StructuralModel.Atom method)
getBondRadius() (in module samson.Facade.SAMSON)
getBondTo() (samson.Modeling.StructuralModel.Atom method)
getCameraControllerFlag() (in module samson.Facade.SAMSON)
getCameraList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getCarbon() (samson.Modeling.StructuralModel.Backbone method)
getCarbon1p() (samson.Modeling.StructuralModel.Backbone method)
getCarbon3p() (samson.Modeling.StructuralModel.Backbone method)
getCarbon4p() (samson.Modeling.StructuralModel.Backbone method)
getCarbon5p() (samson.Modeling.StructuralModel.Backbone method)
getCategoryString() (samson.DataModel.Document.Animation static method)
getCenterOfMass() (samson.Modeling.StructuralModel.StructuralModel static method)
getCentroid() (samson.Modeling.StructuralModel.StructuralModel static method)
getChain() (samson.Modeling.StructuralModel.Atom method)
getChangedForceIndex() (samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
getChangedMomentumIndex() (samson.Modeling.DynamicalModel.ParticleSystem method)
getChangedPositionIndex() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
getChildren() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
getClassCategoryString() (samson.Core.Class.Class method)
getClassTypeString() (samson.Core.Class.Class method)
getColor() (samson.DataModel.Color.ColorPalette method)
(samson.DataModel.Color.ColorPaletteDiverging method)
(samson.DataModel.Color.ColorPaletteDivergingHCL method)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL method)
(samson.DataModel.Color.ColorPaletteQualitative method)
(samson.DataModel.Color.ColorPaletteQualitativeHCL method)
(samson.DataModel.Color.ColorPaletteSequential method)
(samson.DataModel.Color.ColorPaletteSequentialHCL method)
(samson.DataModel.Color.ColorSchemeConstant method)
(samson.DataModel.Color.ColorSchemeConstantIllustrate method)
(samson.DataModel.Color.ColorSchemeCPK method)
(samson.DataModel.Color.ColorSchemePerAttribute_dimensionless method)
(samson.DataModel.Color.ColorSchemePerAttribute_double method)
(samson.DataModel.Color.ColorSchemePerAttribute_float method)
(samson.DataModel.Color.ColorSchemePerAttribute_int method)
(samson.DataModel.Color.ColorSchemePerChainID method)
(samson.DataModel.Color.ColorSchemePerChainIllustrate method)
(samson.DataModel.Color.ColorSchemePerFormalCharge method)
(samson.DataModel.Color.ColorSchemePerOccupancy method)
(samson.DataModel.Color.ColorSchemePerPartialCharge method)
(samson.DataModel.Color.ColorSchemePerResidueHydrophobicity method)
(samson.DataModel.Color.ColorSchemePerResidueSequenceNumber method)
(samson.DataModel.Color.ColorSchemePerResidueType method)
(samson.DataModel.Color.ColorSchemePerSecondaryStructureType method)
(samson.DataModel.Color.ColorSchemePerSideChainCharge method)
(samson.DataModel.Color.ColorSchemePerSideChainPolarity method)
(samson.DataModel.Color.ColorSchemePerTemperatureFactor method)
(samson.DataModel.DataGraph.ColorScheme method)
(samson.DataModel.Type.Color method)
(samson.DataModel.Visualization.VisualPreset method)
getColorFromUser() (in module samson.Facade.SAMSON)
getColorInPaletteColorSpace() (samson.DataModel.Color.ColorPalette method)
(samson.DataModel.Color.ColorPaletteDiverging method)
(samson.DataModel.Color.ColorPaletteDivergingHCL method)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL method)
(samson.DataModel.Color.ColorPaletteQualitative method)
(samson.DataModel.Color.ColorPaletteQualitativeHCL method)
(samson.DataModel.Color.ColorPaletteSequential method)
(samson.DataModel.Color.ColorPaletteSequentialHCL method)
getColorPalette() (samson.DataModel.Color.ColorSchemePerAttribute_dimensionless method)
(samson.DataModel.Color.ColorSchemePerAttribute_double method)
(samson.DataModel.Color.ColorSchemePerAttribute_float method)
(samson.DataModel.Color.ColorSchemePerAttribute_int method)
(samson.DataModel.Color.ColorSchemePerChainID method)
(samson.DataModel.Color.ColorSchemePerChainIllustrate method)
(samson.DataModel.Color.ColorSchemePerFormalCharge method)
(samson.DataModel.Color.ColorSchemePerOccupancy method)
(samson.DataModel.Color.ColorSchemePerPartialCharge method)
(samson.DataModel.Color.ColorSchemePerResidueHydrophobicity method)
(samson.DataModel.Color.ColorSchemePerResidueSequenceNumber method)
(samson.DataModel.Color.ColorSchemePerResidueType method)
(samson.DataModel.Color.ColorSchemePerSecondaryStructureType method)
(samson.DataModel.Color.ColorSchemePerSideChainCharge method)
(samson.DataModel.Color.ColorSchemePerSideChainPolarity method)
(samson.DataModel.Color.ColorSchemePerTemperatureFactor method)
(samson.DataModel.Visualization.VisualPreset method)
getColorPaletteFromUser() (in module samson.Facade.SAMSON)
getColorScheme() (samson.DataModel.DataGraph.Material method)
getColorSchemeProxy() (samson.DataModel.Visualization.VisualPreset method)
getColorVector() (samson.DataModel.Color.ColorPalette method)
(samson.DataModel.Color.ColorPaletteDiverging method)
(samson.DataModel.Color.ColorPaletteDivergingHCL method)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL method)
(samson.DataModel.Color.ColorPaletteQualitative method)
(samson.DataModel.Color.ColorPaletteQualitativeHCL method)
(samson.DataModel.Color.ColorPaletteSequential method)
(samson.DataModel.Color.ColorPaletteSequentialHCL method)
getColumn() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
getComment() (samson.Modeling.StructuralModel.Atom method)
getConformationList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getConnectedComponent() (samson.Modeling.StructuralModel.Atom method)
getControllerList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getCovalentRadius() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getCurrentSelectionFilter() (in module samson.Facade.SAMSON)
getDeepSelectionFlag() (in module samson.Facade.SAMSON)
getDefaultColorPalette() (samson.DataModel.Color.ColorSchemePerChainID static method)
(samson.DataModel.Color.ColorSchemePerChainIllustrate static method)
(samson.DataModel.Color.ColorSchemePerFormalCharge static method)
(samson.DataModel.Color.ColorSchemePerOccupancy static method)
(samson.DataModel.Color.ColorSchemePerPartialCharge static method)
(samson.DataModel.Color.ColorSchemePerResidueHydrophobicity static method)
(samson.DataModel.Color.ColorSchemePerResidueSequenceNumber static method)
(samson.DataModel.Color.ColorSchemePerResidueType static method)
(samson.DataModel.Color.ColorSchemePerSecondaryStructureType static method)
(samson.DataModel.Color.ColorSchemePerSideChainCharge static method)
(samson.DataModel.Color.ColorSchemePerSideChainPolarity static method)
(samson.DataModel.Color.ColorSchemePerTemperatureFactor static method)
(samson.DataModel.Visualization.VisualPreset static method)
getDefaultColorPaletteForCurrentColorScheme() (samson.DataModel.Visualization.VisualPreset method)
getDefaultVisualPresetGroups() (samson.DataModel.Visualization.VisualPresetGroup static method)
getDegreesFromRadians() (samson.DataModel.Type.constant static method)
getDeltaAtom() (samson.Modeling.StructuralModel.SideChain method)
getDisplacement() (samson.Modeling.StructuralModel.Bond method)
getDissociationConstant1() (samson.Modeling.StructuralModel.Residue static method)
getDissociationConstant2() (samson.Modeling.StructuralModel.Residue static method)
getDocument() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getDoubleFromUser() (in module samson.Facade.SAMSON)
getDoubleIntervalFromUser() (in module samson.Facade.SAMSON)
getDynamicalModel() (samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getDynamicalModelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getDynamicalRoot() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
getE1() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialTransform method)
getE2() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialTransform method)
getE3() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialTransform method)
getE4() (samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialTransform method)
getE5() (samson.DataModel.Type.matrix66 method)
getE6() (samson.DataModel.Type.matrix66 method)
getElectronegativity() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getElement() (samson.Modeling.Element.ElementTable static method)
getElementFromUser() (in module samson.Facade.SAMSON)
getElementName() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getElementsFromUser() (in module samson.Facade.SAMSON)
getElementSymbol() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getElementTypeByName() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getElementTypeBySymbol() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getEnergy() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getEnergyData() (samson.Modeling.StructuralModel.Path method)
getEpsilonAtom() (samson.Modeling.StructuralModel.SideChain method)
getEtaAtom() (samson.Modeling.StructuralModel.SideChain method)
getEyeDestination() (samson.DataModel.Document.Camera method)
getEyePosition() (samson.DataModel.Document.Camera method)
getEyeVelocity() (samson.DataModel.Document.Camera method)
getFileNameFromUser() (in module samson.Facade.SAMSON)
getFileNamesFromUser() (in module samson.Facade.SAMSON)
getFlags() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getFolderList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getForce() (samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getForceChanged() (samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
getForceData() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getFrustumPositionFromWorldPosition() (samson.DataModel.Document.Camera method)
getGammaAtom() (samson.Modeling.StructuralModel.SideChain method)
getGeometryString() (samson.Modeling.StructuralModel.Atom static method)
getGridFlag() (in module samson.Facade.SAMSON)
getGroup() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getGroupNodes() (samson.DataModel.DataGraph.Group method)
getHeadPosition() (samson.DataModel.Document.Camera method)
getHierarchyString() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getHybridizationString() (samson.Modeling.StructuralModel.Atom static method)
getHydrogens() (samson.Modeling.StructuralModel.Atom method)
getHydrophobicity() (samson.Modeling.StructuralModel.Residue method)
getHydrophobicityForResidueType() (samson.Modeling.StructuralModel.Residue static method)
getHydrophobicityScaleString() (samson.Modeling.StructuralModel.Residue static method)
getIndex() (samson.DataModel.DataGraph.NodeIndexer method)
getInertiaTensor() (samson.Modeling.StructuralModel.StructuralModel static method)
getInheritedFlags() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getIntegerFromUser() (in module samson.Facade.SAMSON)
getIntegerIntervalFromUser() (in module samson.Facade.SAMSON)
getInteractionModel() (samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getInteractionModelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getInterface() (samson.Core.Class.ClassProxy method)
getInverseMass() (samson.Modeling.DynamicalModel.ParticleSystem method)
getIsoelectricPointPH() (samson.Modeling.StructuralModel.Residue static method)
getItemFromUser() (in module samson.Facade.SAMSON)
getKeyframeIndex() (samson.DataModel.Document.Animation method)
getLabelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getMass() (samson.Modeling.DynamicalModel.ParticleSystem method)
getMaterial() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getMaterialOwner() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getMaximum3DTextureSize() (in module samson.Facade.SAMSON)
getMaximumRectangleTextureSize() (in module samson.Facade.SAMSON)
getMaximumTextureSize() (in module samson.Facade.SAMSON)
getMemoryFootprint() (samson.Core.Reference.ReferenceTarget method)
(samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Material method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Grid method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.NeighborSearch.NeighborSearch method)
(samson.Simulation.NeighborSearch.ParticleSystem method)
(samson.Simulation.NeighborSearch.ParticleSystemGrid method)
(samson.Simulation.NeighborSearch.ParticleSystemGridPBC method)
(samson.Simulation.NeighborSearch.ParticleSystemPBC method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getModel() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
getModelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getMolecularWeight() (samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
getMolecularWeightForNodeIndexer() (samson.Modeling.StructuralModel.StructuralModel static method)
getMolecule() (samson.Modeling.StructuralModel.Atom method)
getMomentum() (samson.Modeling.DynamicalModel.ParticleSystem method)
getMousePositionInViewport() (in module samson.Facade.SAMSON)
getMultipleBondDisplayFlag() (in module samson.Facade.SAMSON)
getMultiSampleFactor() (in module samson.Facade.SAMSON)
getNeighbors() (samson.Modeling.StructuralModel.Grid method)
(samson.Simulation.NeighborSearch.ParticleSystem method)
(samson.Simulation.NeighborSearch.ParticleSystemGrid method)
(samson.Simulation.NeighborSearch.ParticleSystemGridPBC method)
(samson.Simulation.NeighborSearch.ParticleSystemPBC method)
getNeighborVector() (samson.Modeling.StructuralModel.Grid method)
(samson.Simulation.NeighborSearch.ParticleSystem method)
(samson.Simulation.NeighborSearch.ParticleSystemGrid method)
(samson.Simulation.NeighborSearch.ParticleSystemGridPBC method)
(samson.Simulation.NeighborSearch.ParticleSystemPBC method)
getNextAminoAcid() (samson.Modeling.StructuralModel.Residue method)
getNextAnimation() (samson.DataModel.Document.Animation method)
getNextAsset() (samson.DataModel.Asset.Asset method)
getNextCamera() (samson.DataModel.Document.Camera method)
getNextConformation() (samson.Modeling.StructuralModel.Conformation method)
getNextDocument() (samson.DataModel.Document.Document method)
getNextDynamicalNode() (samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.Root method)
getNextFolder() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getNextGroup() (samson.DataModel.DataGraph.Group method)
getNextLabel() (samson.DataModel.Document.Label method)
getNextModel() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
getNextNode() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getNextNucleicAcid() (samson.Modeling.StructuralModel.Residue method)
getNextPath() (samson.Modeling.StructuralModel.Path method)
getNextPresentation() (samson.DataModel.Document.Presentation method)
getNextResidue() (samson.Modeling.StructuralModel.Residue method)
getNextSimulator() (samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
getNextStructuralNode() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
getNitrogen() (samson.Modeling.StructuralModel.Backbone method)
getNode() (in module samson.Facade.SAMSON)
(samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Material method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.DataGraph.NodeIndexer method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getNodeGroupList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getNodes() (in module samson.Facade.SAMSON)
(samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.DataGraph.NodeIndexer method)
(samson.DataModel.DataGraph.Selector method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getNoteList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getNumberOfBondedAtoms() (samson.Modeling.StructuralModel.Atom method)
getNumberOfBondedCarbons() (samson.Modeling.StructuralModel.Atom method)
getNumberOfBondedHeavyAtoms() (samson.Modeling.StructuralModel.Atom method)
getNumberOfBondedHydrogens() (samson.Modeling.StructuralModel.Atom method)
getNumberOfBondedNitrogens() (samson.Modeling.StructuralModel.Atom method)
getNumberOfBondedOxygens() (samson.Modeling.StructuralModel.Atom method)
getNumberOfBondedSulfurs() (samson.Modeling.StructuralModel.Atom method)
getNumberOfBonds() (samson.Modeling.StructuralModel.Atom method)
getNumberOfChangedPositions() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
getNumberOfElements() (in module samson.Facade.SAMSON)
getOppositeAtom() (samson.Modeling.StructuralModel.Bond method)
getOrientation() (samson.DataModel.Type.spatialTransform method)
(samson.Modeling.StructuralModel.StructuralModel method)
getOxygen() (samson.Modeling.StructuralModel.Backbone method)
getOxygen3p() (samson.Modeling.StructuralModel.Backbone method)
getOxygen4p() (samson.Modeling.StructuralModel.Backbone method)
getOxygen5p() (samson.Modeling.StructuralModel.Backbone method)
getParent() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getParticleSystem() (samson.Modeling.InteractionModel.ParticleSystem method)
getPathFromUser() (in module samson.Facade.SAMSON)
getPathList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getPeriod() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getPeriodicBoundaryConditions() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
getPhosphorus() (samson.Modeling.StructuralModel.Backbone method)
getPosition() (samson.DataModel.Document.Label method)
(samson.DataModel.Type.spatialTransform method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.StructuralModel method)
getPositionChanged() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
getPositionData() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getPresentationList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getPreviousAminoAcid() (samson.Modeling.StructuralModel.Residue method)
getPreviousAnimation() (samson.DataModel.Document.Animation method)
getPreviousAsset() (samson.DataModel.Asset.Asset method)
getPreviousCamera() (samson.DataModel.Document.Camera method)
getPreviousConformation() (samson.Modeling.StructuralModel.Conformation method)
getPreviousDocument() (samson.DataModel.Document.Document method)
getPreviousDynamicalNode() (samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.Root method)
getPreviousFolder() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getPreviousGroup() (samson.DataModel.DataGraph.Group method)
getPreviousLabel() (samson.DataModel.Document.Label method)
getPreviousModel() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
getPreviousNode() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getPreviousNucleicAcid() (samson.Modeling.StructuralModel.Residue method)
getPreviousPath() (samson.Modeling.StructuralModel.Path method)
getPreviousPresentation() (samson.DataModel.Document.Presentation method)
getPreviousResidue() (samson.Modeling.StructuralModel.Residue method)
getPreviousSimulator() (samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
getPreviousStructuralNode() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
getPrincipalAxes() (samson.Modeling.StructuralModel.StructuralModel static method)
getProjectionMatrix() (samson.DataModel.Document.Camera method)
getProjectionMatrixTranspose() (samson.DataModel.Document.Camera method)
getPropertyModelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getProxy() (in module samson.Facade.SAMSON)
getPublicName() (in module samson.Facade.SAMSON)
getPublicVersionNumber() (in module samson.Facade.SAMSON)
getRadiusOfGyration() (samson.Modeling.StructuralModel.StructuralModel static method)
getRecordType() (samson.Modeling.StructuralModel.Atom method)
getReplyFromUser() (in module samson.Facade.SAMSON)
getResidue() (samson.Modeling.StructuralModel.Atom method)
getResidueTypeFromString() (samson.Modeling.StructuralModel.Residue static method)
getResidueTypeFullName() (samson.Modeling.StructuralModel.Residue static method)
getResidueTypeString() (samson.Modeling.StructuralModel.Residue static method)
getRoot() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getRootNodes() (samson.DataModel.DataGraph.NodeIndexer method)
getRotationVelocity() (samson.DataModel.Document.Camera method)
getRow() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
getSAMSONElementsPath() (in module samson.Facade.SAMSON)
getSAMSONPath() (in module samson.Facade.SAMSON)
getSaveFileNameFromUser() (in module samson.Facade.SAMSON)
getScaleFlag() (in module samson.Facade.SAMSON)
getScratchPath() (in module samson.Facade.SAMSON)
getSecondaryStructureTypeString() (samson.Modeling.StructuralModel.Residue method)
getSegment() (samson.Modeling.StructuralModel.Atom method)
getSelectedNodes() (samson.DataModel.Document.Document method)
getSelectorProxy() (samson.DataModel.Visualization.VisualPreset method)
getShapeParameter() (samson.Modeling.StructuralModel.StructuralModel static method)
getSideChain() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Residue method)
getSideChainCharge() (samson.Modeling.StructuralModel.Residue static method)
getSideChainChargeString() (samson.Modeling.StructuralModel.Residue static method)
getSideChainPolarity() (samson.Modeling.StructuralModel.Residue static method)
getSideChainPolarityString() (samson.Modeling.StructuralModel.Residue static method)
getSimulationFlag() (in module samson.Facade.SAMSON)
getSimulatorList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
getSolventAccessibleSurfaceArea() (samson.Modeling.StructuralModel.StructuralModel static method)
getSpatialTransform() (samson.Modeling.StructuralModel.StructuralModel static method)
getStateUpdater() (samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
getStatusBit() (samson.Modeling.StructuralModel.Atom method)
getStringFromUser() (in module samson.Facade.SAMSON)
getStructuralModelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getStructuralParticleIndexer() (samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getStructuralRoot() (samson.Modeling.StructuralModel.StructuralModel method)
getSubstructure() (samson.Modeling.StructuralModel.Atom method)
getSYBYLType() (samson.Modeling.StructuralModel.Atom method)
getTargetDestination() (samson.DataModel.Document.Camera method)
getTargetPosition() (samson.DataModel.Document.Camera method)
getTargetVelocity() (samson.DataModel.Document.Camera method)
getThisNode() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getTime() (in module samson.Facade.SAMSON)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getTimeData() (samson.Modeling.StructuralModel.Path method)
getTransform (samson.DataModel.Document.Camera property)
getTransform() (samson.Modeling.StructuralModel.StructuralModel method)
getTypeString() (samson.DataModel.Asset.Asset static method)
(samson.DataModel.DataGraph.Group static method)
(samson.DataModel.DataGraph.Node static method)
(samson.DataModel.Document.Animation static method)
(samson.DataModel.Document.Camera static method)
(samson.DataModel.Document.Document static method)
(samson.DataModel.Document.Folder static method)
(samson.DataModel.Document.Label static method)
(samson.DataModel.Document.Presentation static method)
(samson.Modeling.DynamicalModel.ArticulatedBody static method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem static method)
(samson.Modeling.DynamicalModel.DynamicalModel static method)
(samson.Modeling.DynamicalModel.Group static method)
(samson.Modeling.DynamicalModel.Node static method)
(samson.Modeling.DynamicalModel.Particle static method)
(samson.Modeling.DynamicalModel.ParticleSystem static method)
(samson.Modeling.DynamicalModel.RigidBody static method)
(samson.Modeling.DynamicalModel.RigidBodySystem static method)
(samson.Modeling.DynamicalModel.Root static method)
(samson.Modeling.InteractionModel.InteractionModel static method)
(samson.Modeling.InteractionModel.ParticleSystem static method)
(samson.Modeling.Model.Model static method)
(samson.Modeling.Model.ModelNode static method)
(samson.Modeling.StructuralModel.Atom static method)
(samson.Modeling.StructuralModel.Backbone static method)
(samson.Modeling.StructuralModel.Bond static method)
(samson.Modeling.StructuralModel.Chain static method)
(samson.Modeling.StructuralModel.Conformation static method)
(samson.Modeling.StructuralModel.Group static method)
(samson.Modeling.StructuralModel.Molecule static method)
(samson.Modeling.StructuralModel.Node static method)
(samson.Modeling.StructuralModel.Particle static method)
(samson.Modeling.StructuralModel.Path static method)
(samson.Modeling.StructuralModel.PseudoAtom static method)
(samson.Modeling.StructuralModel.Residue static method)
(samson.Modeling.StructuralModel.Root static method)
(samson.Modeling.StructuralModel.Segment static method)
(samson.Modeling.StructuralModel.SideChain static method)
(samson.Modeling.StructuralModel.StructuralModel static method)
(samson.Modeling.VisualModel.VisualModel static method)
(samson.Simulation.Simulator.Simulator static method)
(samson.Simulation.Simulator.SimulatorParticleSystem static method)
(samson.Simulation.StateUpdater.StateUpdater static method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem static method)
getUpVector() (samson.DataModel.Document.Camera method)
getUpVectorDestination() (samson.DataModel.Document.Camera method)
getUserDataPath() (in module samson.Facade.SAMSON)
getUserPlan() (in module samson.Facade.SAMSON)
getUserPlanString() (in module samson.Facade.SAMSON)
getValueAlongLinearTrajectory() (samson.DataModel.Color.ColorPalette static method)
(samson.DataModel.Color.ColorPaletteDiverging static method)
(samson.DataModel.Color.ColorPaletteDivergingHCL static method)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL static method)
(samson.DataModel.Color.ColorPaletteQualitative static method)
(samson.DataModel.Color.ColorPaletteQualitativeHCL static method)
(samson.DataModel.Color.ColorPaletteSequential static method)
(samson.DataModel.Color.ColorPaletteSequentialHCL static method)
getValueAlongTriangularTrajectory() (samson.DataModel.Color.ColorPalette static method)
(samson.DataModel.Color.ColorPaletteDiverging static method)
(samson.DataModel.Color.ColorPaletteDivergingHCL static method)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL static method)
(samson.DataModel.Color.ColorPaletteQualitative static method)
(samson.DataModel.Color.ColorPaletteQualitativeHCL static method)
(samson.DataModel.Color.ColorPaletteSequential static method)
(samson.DataModel.Color.ColorPaletteSequentialHCL static method)
getVanDerWaalsAtomRadiusFlag() (in module samson.Facade.SAMSON)
getVanDerWaalsAtomRadiusRatio() (in module samson.Facade.SAMSON)
getVanDerWaalsRadius() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getVelocity() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getVelocityData() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getVersionNumber() (in module samson.Facade.SAMSON)
getViewMatrix() (samson.DataModel.Document.Camera method)
getViewMatrixTranspose() (samson.DataModel.Document.Camera method)
getViewportHeight() (in module samson.Facade.SAMSON)
getViewportOffset() (samson.DataModel.Document.Label method)
getViewportPositionFromWorldPosition() (in module samson.Facade.SAMSON)
getViewportWidth() (in module samson.Facade.SAMSON)
getViewProjectionMatrix() (samson.DataModel.Document.Camera method)
getViewProjectionMatrixTranspose() (samson.DataModel.Document.Camera method)
getViewProjectionMatrixTransposeInverse() (samson.DataModel.Document.Camera method)
getVisualModelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getVisualModelProxy() (samson.DataModel.Visualization.VisualPreset method)
getWater() (samson.Modeling.StructuralModel.StructuralModel method)
getWaterFromNodeIndexer() (samson.Modeling.StructuralModel.StructuralModel static method)
getWorldPositionFromFrustumPosition() (samson.DataModel.Document.Camera method)
getX() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
getY() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
getZ() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
getZetaAtom() (samson.Modeling.StructuralModel.SideChain method)
GHz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
gigadalton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsDalton property)
gigahertz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
gigatesla (class in samson.DataModel.Quantity)
GLN (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
globalXAxis (samson.DataModel.Type.Color attribute)
globalYAxis (samson.DataModel.Type.Color attribute)
globalZAxis (samson.DataModel.Type.Color attribute)
GLU (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
GLX (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
GLY (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Gold (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
gram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsDalton property)
(samson.DataModel.Quantity.unitsSI property)
gray (class in samson.DataModel.Quantity)
green (samson.DataModel.Type.Color attribute)
greenInt (samson.DataModel.Type.Color property)
Grid (class in samson.Modeling.StructuralModel)
Group (class in samson.DataModel.DataGraph)
(class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
group (samson.Core.Class.ClassAttribute property)
(samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
Group.NodeType (class in samson.DataModel.DataGraph)
(class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
groupSelection() (samson.DataModel.Document.Document method)
GT (class in samson.DataModel.Quantity)
GUIShortcut (samson.Core.Class.ClassProxy property)
GUIUUID (samson.Core.Class.ClassProxy property)
Gy (class in samson.DataModel.Quantity)
H
H (class in samson.DataModel.Quantity)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Hafnium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hartree (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsKilocaloriePerMole property)
(samson.DataModel.Quantity.unitsSI property)
hasAltLocation (samson.Modeling.StructuralModel.Atom property)
hasAminoAcidBackboneAtomName (samson.Modeling.StructuralModel.Atom property)
hasAminoAcidChi1Angle() (samson.Modeling.StructuralModel.Residue method)
hasAminoAcidChi1AngleForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasAminoAcidChi2Angle() (samson.Modeling.StructuralModel.Residue method)
hasAminoAcidChi2AngleForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasAminoAcidChi3Angle() (samson.Modeling.StructuralModel.Residue method)
hasAminoAcidChi3AngleForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasAminoAcidChi4Angle() (samson.Modeling.StructuralModel.Residue method)
hasAminoAcidChi4AngleForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasAminoAcidChi5Angle() (samson.Modeling.StructuralModel.Residue method)
hasAminoAcidChi5AngleForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasAnisotropicTFactors (samson.Modeling.StructuralModel.Atom property)
hasAromaticity (samson.Modeling.StructuralModel.Atom property)
hasChainID (samson.Modeling.StructuralModel.Atom property)
hasColor (samson.DataModel.Visualization.VisualPreset property)
hasColorScheme (samson.DataModel.Visualization.VisualPreset property)
hasComment (samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
hasCompleteAminoAcidBackbone (samson.Modeling.StructuralModel.Residue property)
hasConnectivityAnnotationInformation (samson.Modeling.StructuralModel.StructuralModel property)
hasCrystallographicAndTransformationInformation (samson.Modeling.StructuralModel.StructuralModel property)
hasCustomType (samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Bond property)
hasDefaultColorPalette (samson.DataModel.Visualization.VisualPreset property)
hasDissociationConstant (samson.Modeling.StructuralModel.Residue property)
hasDissociationConstantForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasFormalCharge (samson.Modeling.StructuralModel.Atom property)
hasGeometry (samson.Modeling.StructuralModel.Atom property)
hasHeterogenInformation (samson.Modeling.StructuralModel.StructuralModel property)
hasHybridization (samson.Modeling.StructuralModel.Atom property)
hasHydrophobicity (samson.Modeling.StructuralModel.Residue property)
hasHydrophobicityForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasIndex() (samson.DataModel.DataGraph.NodeIndexer method)
hasInsertionCode (samson.Modeling.StructuralModel.Atom property)
hasKeyframe() (samson.DataModel.Document.Animation method)
hasKeyframes() (samson.DataModel.Document.Animation method)
hasMaterial (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
hasMiscellaneousInformation (samson.Modeling.StructuralModel.StructuralModel property)
hasName (samson.Modeling.StructuralModel.Atom property)
hasNode() (samson.DataModel.DataGraph.NodeIndexer method)
hasNucleicAcidBackboneAtomName (samson.Modeling.StructuralModel.Atom property)
hasOccupancy (samson.Modeling.StructuralModel.Atom property)
hasOneOf() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
hasOpacityRange (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
hasOxidationState (samson.Modeling.StructuralModel.Atom property)
hasOxidationState() (samson.Modeling.Element.Element method)
(samson.Modeling.Element.ElementTable static method)
hasPartialCharge (samson.Modeling.StructuralModel.Atom property)
hasPrimaryStructureInformation (samson.Modeling.StructuralModel.StructuralModel property)
hasRecordType (samson.Modeling.StructuralModel.Atom property)
hasResidueSequenceNumber (samson.Modeling.StructuralModel.Atom property)
hasResonance (samson.Modeling.StructuralModel.Atom property)
hasSecondaryStructureInformation (samson.Modeling.StructuralModel.StructuralModel property)
hasSelector (samson.DataModel.Visualization.VisualPreset property)
hasSerialNumber (samson.Modeling.StructuralModel.Atom property)
hasSideChainCharge (samson.Modeling.StructuralModel.Residue property)
hasSideChainChargeForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasSideChainPolarity (samson.Modeling.StructuralModel.Residue property)
hasSideChainPolarityForResidueType() (samson.Modeling.StructuralModel.Residue static method)
Hassium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hasStatusBit (samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
hasStructuralID (samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
hasSubstructureSequenceNumber (samson.Modeling.StructuralModel.Atom property)
hasSYBYLType (samson.Modeling.StructuralModel.Atom property)
hasTemperatureFactor (samson.Modeling.StructuralModel.Atom property)
hasTitleInformation (samson.Modeling.StructuralModel.StructuralModel property)
hasTransparencyRange (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
hasVisualModel (samson.DataModel.Visualization.VisualPreset property)
hasWaterFlag (samson.Modeling.StructuralModel.Atom property)
hBar (class in samson.DataModel.Quantity)
hcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
HCLfromSRGB() (samson.DataModel.Type.ColorConversion static method)
He (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hectoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
hectocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
hectogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
hectokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
hectometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
hectomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Helium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
henry (class in samson.DataModel.Quantity)
hertz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
HessaEtAl2005 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
heterogenInformation (samson.Modeling.StructuralModel.StructuralModel property)
Hf (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Hg (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hideProgressBar() (in module samson.Facade.SAMSON)
hideStructureFlag (samson.DataModel.Visualization.VisualPreset property)
Highlight (samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.Category attribute)
HighlightAnimation (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
highlightingFlag (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.GUI.Action.Action property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
HIS (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
hK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
hm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
hmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Ho (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hold() (in module samson.Facade.SAMSON)
Holmium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Hs (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
HSVfromSRGB() (samson.DataModel.Type.ColorConversion static method)
hue1 (samson.DataModel.Color.ColorPaletteDiverging property)
(samson.DataModel.Color.ColorPaletteDivergingHCL property)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
(samson.DataModel.Color.ColorPaletteQualitative property)
(samson.DataModel.Color.ColorPaletteQualitativeHCL property)
(samson.DataModel.Color.ColorPaletteSequential property)
(samson.DataModel.Color.ColorPaletteSequentialHCL property)
hue2 (samson.DataModel.Color.ColorPaletteDiverging property)
(samson.DataModel.Color.ColorPaletteDivergingHCL property)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
(samson.DataModel.Color.ColorPaletteQualitative property)
(samson.DataModel.Color.ColorPaletteQualitativeHCL property)
(samson.DataModel.Color.ColorPaletteSequential property)
(samson.DataModel.Color.ColorPaletteSequentialHCL property)
hue3 (samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
hybridization (samson.Modeling.StructuralModel.Atom property)
hybridizationString (samson.Modeling.StructuralModel.Atom property)
Hydrogen (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
HydrogenBond (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
HydrogenBondGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
hydrophobicityScale (samson.Modeling.StructuralModel.Residue property)
hydrophobicityScaleString (samson.Modeling.StructuralModel.Residue property)
Hz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
I
I (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
iconFileName (samson.Core.Class.ClassProxy property)
identity (samson.DataModel.Type.spatialTransform attribute)
ILE (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Importer (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
importFromFile() (in module samson.Facade.SAMSON)
In (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Indium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
inertia66 (class in samson.DataModel.Type)
inertiaFlag (samson.DataModel.Document.Camera property)
informUser() (in module samson.Facade.SAMSON)
initialize() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Presentation method)
initializeInteractions() (samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
initializeNeighborLists() (samson.Simulation.NeighborSearch.ParticleSystem method)
(samson.Simulation.NeighborSearch.ParticleSystemGrid method)
(samson.Simulation.NeighborSearch.ParticleSystemGridPBC method)
(samson.Simulation.NeighborSearch.ParticleSystemPBC method)
insert() (samson.Modeling.StructuralModel.Path method)
insertionCode (samson.Modeling.StructuralModel.Atom property)
insertStructuralParticle() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
Inspector (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
InspectorFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
intensity (class in samson.DataModel.Quantity)
InteractionModel (class in samson.Modeling.InteractionModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
InteractionModel.NodeType (class in samson.Modeling.InteractionModel)
InteractionModelArticulatedBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
InteractionModelParticleSystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
InteractionModelParticleSystemFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
InteractionModelRigidBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
interactionModelType (samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
intersectGroupNodesWithSelection() (samson.DataModel.Document.Document method)
interval (class in samson.DataModel.Type)
intervalVector3 (class in samson.DataModel.Type)
inverse() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.spatialTransform method)
inverseAg (class in samson.DataModel.Quantity)
inverseAm (class in samson.DataModel.Quantity)
inverseAmountOfSubstance (class in samson.DataModel.Quantity)
inverseAngstrom (class in samson.DataModel.Quantity)
inverseArea (class in samson.DataModel.Quantity)
inverseAs (class in samson.DataModel.Quantity)
inverseAttogram (class in samson.DataModel.Quantity)
inverseAttometer (class in samson.DataModel.Quantity)
inverseAttosecond (class in samson.DataModel.Quantity)
inverseCentigram (class in samson.DataModel.Quantity)
inverseCentimeter (class in samson.DataModel.Quantity)
inverseCentisecond (class in samson.DataModel.Quantity)
inverseCg (class in samson.DataModel.Quantity)
inverseCm (class in samson.DataModel.Quantity)
inverseCs (class in samson.DataModel.Quantity)
inverseCubicAm (class in samson.DataModel.Quantity)
inverseCubicAngstrom (class in samson.DataModel.Quantity)
inverseCubicAttometer (class in samson.DataModel.Quantity)
inverseCubicCentimeter (class in samson.DataModel.Quantity)
inverseCubicCm (class in samson.DataModel.Quantity)
inverseCubicDam (class in samson.DataModel.Quantity)
inverseCubicDecameter (class in samson.DataModel.Quantity)
inverseCubicDecimeter (class in samson.DataModel.Quantity)
inverseCubicDistance (class in samson.DataModel.Quantity)
inverseCubicDm (class in samson.DataModel.Quantity)
inverseCubicFemtometer (class in samson.DataModel.Quantity)
inverseCubicFm (class in samson.DataModel.Quantity)
inverseCubicHectometer (class in samson.DataModel.Quantity)
inverseCubicHm (class in samson.DataModel.Quantity)
inverseCubicKilometer (class in samson.DataModel.Quantity)
inverseCubicKm (class in samson.DataModel.Quantity)
inverseCubicLength (class in samson.DataModel.Quantity)
inverseCubicM (class in samson.DataModel.Quantity)
inverseCubicMeter (class in samson.DataModel.Quantity)
inverseCubicMicrometer (class in samson.DataModel.Quantity)
inverseCubicMillimeter (class in samson.DataModel.Quantity)
inverseCubicMm (class in samson.DataModel.Quantity)
inverseCubicNanometer (class in samson.DataModel.Quantity)
inverseCubicNm (class in samson.DataModel.Quantity)
inverseCubicPicometer (class in samson.DataModel.Quantity)
inverseCubicPm (class in samson.DataModel.Quantity)
inverseCubicUm (class in samson.DataModel.Quantity)
inverseCubicYm (class in samson.DataModel.Quantity)
inverseCubicYoctometer (class in samson.DataModel.Quantity)
inverseCubicZeptometer (class in samson.DataModel.Quantity)
inverseCubicZm (class in samson.DataModel.Quantity)
inverseDag (class in samson.DataModel.Quantity)
inverseDam (class in samson.DataModel.Quantity)
inverseDecagram (class in samson.DataModel.Quantity)
inverseDecameter (class in samson.DataModel.Quantity)
inverseDecigram (class in samson.DataModel.Quantity)
inverseDecimeter (class in samson.DataModel.Quantity)
inverseDecisecond (class in samson.DataModel.Quantity)
inverseDg (class in samson.DataModel.Quantity)
inverseDistance (class in samson.DataModel.Quantity)
inverseDm (class in samson.DataModel.Quantity)
inverseDs (class in samson.DataModel.Quantity)
inverseFemtogram (class in samson.DataModel.Quantity)
inverseFemtometer (class in samson.DataModel.Quantity)
inverseFemtosecond (class in samson.DataModel.Quantity)
inverseFg (class in samson.DataModel.Quantity)
inverseFm (class in samson.DataModel.Quantity)
inverseForce (class in samson.DataModel.Quantity)
inverseFs (class in samson.DataModel.Quantity)
inverseG (class in samson.DataModel.Quantity)
inverseGram (class in samson.DataModel.Quantity)
inverseHectogram (class in samson.DataModel.Quantity)
inverseHectometer (class in samson.DataModel.Quantity)
inverseHg (class in samson.DataModel.Quantity)
inverseHm (class in samson.DataModel.Quantity)
inverseInertia66 (class in samson.DataModel.Type)
inverseIntensity (class in samson.DataModel.Quantity)
inverseKg (class in samson.DataModel.Quantity)
inverseKilogram (class in samson.DataModel.Quantity)
inverseKilometer (class in samson.DataModel.Quantity)
inverseKm (class in samson.DataModel.Quantity)
inverseLength (class in samson.DataModel.Quantity)
inverseLength3 (class in samson.DataModel.Type)
inverseLengthInverseMass (class in samson.DataModel.Quantity)
inverseLuminousIntensity (class in samson.DataModel.Quantity)
inverseM (class in samson.DataModel.Quantity)
inverseMass (class in samson.DataModel.Quantity)
inverseMass33 (class in samson.DataModel.Type)
inverseMeter (class in samson.DataModel.Quantity)
inverseMg (class in samson.DataModel.Quantity)
,
[1]
inverseMicrogram (class in samson.DataModel.Quantity)
inverseMicrometer (class in samson.DataModel.Quantity)
inverseMicrosecond (class in samson.DataModel.Quantity)
inverseMilligram (class in samson.DataModel.Quantity)
inverseMillimeter (class in samson.DataModel.Quantity)
inverseMillisecond (class in samson.DataModel.Quantity)
inverseMm (class in samson.DataModel.Quantity)
inverseMomentOfInertia (class in samson.DataModel.Quantity)
inverseMomentOfInertia33 (class in samson.DataModel.Type)
inverseMomentum (class in samson.DataModel.Quantity)
inverseMomentum3 (class in samson.DataModel.Type)
inverseMs (class in samson.DataModel.Quantity)
,
[1]
inverseNanogram (class in samson.DataModel.Quantity)
inverseNanometer (class in samson.DataModel.Quantity)
inverseNanosecond (class in samson.DataModel.Quantity)
inverseNg (class in samson.DataModel.Quantity)
inverseNm (class in samson.DataModel.Quantity)
inverseNs (class in samson.DataModel.Quantity)
inversePg (class in samson.DataModel.Quantity)
inversePicogram (class in samson.DataModel.Quantity)
inversePicometer (class in samson.DataModel.Quantity)
inversePicosecond (class in samson.DataModel.Quantity)
inversePm (class in samson.DataModel.Quantity)
inversePs (class in samson.DataModel.Quantity)
inverseS (class in samson.DataModel.Quantity)
inverseSecond (class in samson.DataModel.Quantity)
inverseSquareAm (class in samson.DataModel.Quantity)
inverseSquareAmountOfSubstance (class in samson.DataModel.Quantity)
inverseSquareAngstrom (class in samson.DataModel.Quantity)
inverseSquareAttometer (class in samson.DataModel.Quantity)
inverseSquareCentimeter (class in samson.DataModel.Quantity)
inverseSquareCm (class in samson.DataModel.Quantity)
inverseSquareDam (class in samson.DataModel.Quantity)
inverseSquareDecameter (class in samson.DataModel.Quantity)
inverseSquareDecimeter (class in samson.DataModel.Quantity)
inverseSquareDistance (class in samson.DataModel.Quantity)
inverseSquareDm (class in samson.DataModel.Quantity)
inverseSquareFemtometer (class in samson.DataModel.Quantity)
inverseSquareFemtosecond (class in samson.DataModel.Quantity)
inverseSquareFm (class in samson.DataModel.Quantity)
inverseSquareHectometer (class in samson.DataModel.Quantity)
inverseSquareHm (class in samson.DataModel.Quantity)
inverseSquareIntensity (class in samson.DataModel.Quantity)
inverseSquareKilometer (class in samson.DataModel.Quantity)
inverseSquareKm (class in samson.DataModel.Quantity)
inverseSquareLength (class in samson.DataModel.Quantity)
inverseSquareLuminousIntensity (class in samson.DataModel.Quantity)
inverseSquareM (class in samson.DataModel.Quantity)
inverseSquareMass (class in samson.DataModel.Quantity)
inverseSquareMeter (class in samson.DataModel.Quantity)
inverseSquareMicrometer (class in samson.DataModel.Quantity)
inverseSquareMillimeter (class in samson.DataModel.Quantity)
inverseSquareMm (class in samson.DataModel.Quantity)
inverseSquareNanometer (class in samson.DataModel.Quantity)
inverseSquareNm (class in samson.DataModel.Quantity)
inverseSquarePicometer (class in samson.DataModel.Quantity)
inverseSquarePm (class in samson.DataModel.Quantity)
inverseSquareTemperature (class in samson.DataModel.Quantity)
inverseSquareTime (class in samson.DataModel.Quantity)
inverseSquareUm (class in samson.DataModel.Quantity)
inverseSquareYm (class in samson.DataModel.Quantity)
inverseSquareYoctometer (class in samson.DataModel.Quantity)
inverseSquareZeptometer (class in samson.DataModel.Quantity)
inverseSquareZm (class in samson.DataModel.Quantity)
inverseTemperature (class in samson.DataModel.Quantity)
inverseTime (class in samson.DataModel.Quantity)
inverseTransformAcceleration() (samson.DataModel.Type.spatialTransform method)
inverseTransformVelocity() (samson.DataModel.Type.spatialTransform method)
inverseUm (class in samson.DataModel.Quantity)
inverseVolume (class in samson.DataModel.Quantity)
inverseYg (class in samson.DataModel.Quantity)
inverseYm (class in samson.DataModel.Quantity)
inverseYoctogram (class in samson.DataModel.Quantity)
inverseYoctometer (class in samson.DataModel.Quantity)
inverseYoctosecond (class in samson.DataModel.Quantity)
inverseYs (class in samson.DataModel.Quantity)
inverseZeptogram (class in samson.DataModel.Quantity)
inverseZeptometer (class in samson.DataModel.Quantity)
inverseZeptosecond (class in samson.DataModel.Quantity)
inverseZg (class in samson.DataModel.Quantity)
inverseZm (class in samson.DataModel.Quantity)
inverseZs (class in samson.DataModel.Quantity)
Iodine (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Ir (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Iridium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Iron (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
isActinide (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
isActinide() (samson.Modeling.Element.ElementTable static method)
isAlkaliMetal (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
isAlkaliMetal() (samson.Modeling.Element.ElementTable static method)
isAlkalineEarthMetal (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
isAlkalineEarthMetal() (samson.Modeling.Element.ElementTable static method)
isAmideBond (samson.Modeling.StructuralModel.Bond property)
isAminoAcid (samson.Modeling.StructuralModel.Residue property)
isAminoAcidResidueType() (samson.Modeling.StructuralModel.Residue static method)
isAttachedToHydrogenBondDonor() (samson.Modeling.StructuralModel.Atom method)
isCarbonylBond (samson.Modeling.StructuralModel.Bond property)
isCarboxylOxygen() (samson.Modeling.StructuralModel.Atom method)
isContainedIn() (samson.DataModel.Type.intervalVector3 method)
isCreated (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
isDiatomicNonmetal (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
isDiatomicNonmetal() (samson.Modeling.Element.ElementTable static method)
isDimensionless (samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsDalton property)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsKilocaloriePerMole property)
(samson.DataModel.Quantity.unitsSI property)
isDiscoverable (samson.Core.Class.ClassProxy property)
(samson.GUI.Action.Action property)
isDonorborneHydrogen() (samson.Modeling.StructuralModel.Atom method)
isDynamicalModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isEmpty (samson.DataModel.DataGraph.NodeIndexer property)
isEmpty() (samson.DataModel.Type.interval method)
isEnabled (samson.Core.Class.ClassAttribute property)
isErased (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
isEsterBond (samson.Modeling.StructuralModel.Bond property)
isFromAminoAcidBackbone (samson.Modeling.StructuralModel.Atom property)
isFromNucleicAcidBackbone (samson.Modeling.StructuralModel.Atom property)
isGUIThread() (in module samson.Facade.SAMSON)
isHalogen (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
isHalogen() (samson.Modeling.Element.ElementTable static method)
isHighlighted (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
isHolding() (in module samson.Facade.SAMSON)
isHydrogenBondAcceptor() (samson.Modeling.StructuralModel.Atom method)
isHydrogenBondDonor() (samson.Modeling.StructuralModel.Atom method)
isIn() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isInAminoAcid (samson.Modeling.StructuralModel.Atom property)
isInBackbone (samson.Modeling.StructuralModel.Atom property)
isInChain (samson.Modeling.StructuralModel.Atom property)
isInMolecule (samson.Modeling.StructuralModel.Atom property)
isInNucleicAcid (samson.Modeling.StructuralModel.Atom property)
isInResidue (samson.Modeling.StructuralModel.Atom property)
isInSegment (samson.Modeling.StructuralModel.Atom property)
isInSideChain (samson.Modeling.StructuralModel.Atom property)
isInSubstructure (samson.Modeling.StructuralModel.Atom property)
isInteractionModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isLanthanide (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
isLanthanide() (samson.Modeling.Element.ElementTable static method)
isLinking() (samson.Modeling.StructuralModel.Bond method)
isLocked (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.GUI.Action.Action property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
isMesh() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isMetal (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
isMetal() (samson.Modeling.Element.ElementTable static method)
isMetalloid (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
isMetalloid() (samson.Modeling.Element.ElementTable static method)
isModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isMoving() (samson.DataModel.Document.Camera method)
isNitroOxygen() (samson.Modeling.StructuralModel.Atom method)
isNobleGas (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
isNobleGas() (samson.Modeling.Element.ElementTable static method)
isNucleicAcid (samson.Modeling.StructuralModel.Residue property)
isNucleicAcidResidueType() (samson.Modeling.StructuralModel.Residue static method)
isoelectricPointPH (samson.Modeling.StructuralModel.Residue property)
isOneOf() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isPerAttributeColorScheme() (samson.DataModel.Visualization.VisualPreset static method)
isPlanar() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.StructuralModel static method)
isPolyatomicNonmetal (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
isPolyatomicNonmetal() (samson.Modeling.Element.ElementTable static method)
isPosttransitionMetal (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
isPosttransitionMetal() (samson.Modeling.Element.ElementTable static method)
isPrimaryAmideBond (samson.Modeling.StructuralModel.Bond property)
isProgressBarStopped() (in module samson.Facade.SAMSON)
isPropertyModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isReactiveNonmetal (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
isReactiveNonmetal() (samson.Modeling.Element.ElementTable static method)
isRedoing() (in module samson.Facade.SAMSON)
isSecondaryAmideBond (samson.Modeling.StructuralModel.Bond property)
isSelected (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
isSerializable (samson.DataModel.Asset.Asset property)
(samson.DataModel.Color.ColorPalette property)
(samson.DataModel.Color.ColorPaletteDiverging property)
(samson.DataModel.Color.ColorPaletteDivergingHCL property)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
(samson.DataModel.Color.ColorPaletteQualitative property)
(samson.DataModel.Color.ColorPaletteQualitativeHCL property)
(samson.DataModel.Color.ColorPaletteSequential property)
(samson.DataModel.Color.ColorPaletteSequentialHCL property)
(samson.DataModel.Color.ColorSchemeConstant property)
(samson.DataModel.Color.ColorSchemeConstantIllustrate property)
(samson.DataModel.Color.ColorSchemeCPK property)
(samson.DataModel.Color.ColorSchemePerAttribute_dimensionless property)
(samson.DataModel.Color.ColorSchemePerAttribute_double property)
(samson.DataModel.Color.ColorSchemePerAttribute_float property)
(samson.DataModel.Color.ColorSchemePerAttribute_int property)
(samson.DataModel.Color.ColorSchemePerChainID property)
(samson.DataModel.Color.ColorSchemePerChainIllustrate property)
(samson.DataModel.Color.ColorSchemePerFormalCharge property)
(samson.DataModel.Color.ColorSchemePerOccupancy property)
(samson.DataModel.Color.ColorSchemePerPartialCharge property)
(samson.DataModel.Color.ColorSchemePerResidueHydrophobicity property)
(samson.DataModel.Color.ColorSchemePerResidueSequenceNumber property)
(samson.DataModel.Color.ColorSchemePerResidueType property)
(samson.DataModel.Color.ColorSchemePerSecondaryStructureType property)
(samson.DataModel.Color.ColorSchemePerSideChainCharge property)
(samson.DataModel.Color.ColorSchemePerSideChainPolarity property)
(samson.DataModel.Color.ColorSchemePerTemperatureFactor property)
(samson.DataModel.DataGraph.ColorScheme property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Material property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.DataGraph.Selector property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.DataModel.Type.Color property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
isSimulator() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isStructuralModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isStructuralParticle() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isSulfoneOxygen() (samson.Modeling.StructuralModel.Atom method)
isTerminal (samson.Modeling.StructuralModel.Residue property)
isTertiaryAmideBond (samson.Modeling.StructuralModel.Bond property)
isThiocarboxylOxygen() (samson.Modeling.StructuralModel.Atom method)
isTransitionMetal (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
isTransitionMetal() (samson.Modeling.Element.ElementTable static method)
isType() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isUndoing() (in module samson.Facade.SAMSON)
isValid (samson.Core.Container.UUID property)
isVisible (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
isVisualModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isWater() (samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
J
J (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsKilocaloriePerMole property)
(samson.DataModel.Quantity.unitsSI property)
joule (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsKilocaloriePerMole property)
(samson.DataModel.Quantity.unitsSI property)
joulePerKelvin (class in samson.DataModel.Quantity)
joulePerMole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsKilocaloriePerMole property)
(samson.DataModel.Quantity.unitsSI property)
joulePerMoleToElectronvolt (samson.DataModel.Quantity.unitsSI property)
joulePerMoleToHartree (samson.DataModel.Quantity.unitsSI property)
joulePerMoleToKilocaloriePerMole (samson.DataModel.Quantity.unitsSI property)
jouleSecond (class in samson.DataModel.Quantity)
jPerK (class in samson.DataModel.Quantity)
jPerMol (class in samson.DataModel.Quantity)
JPerMol (samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsKilocaloriePerMole property)
(samson.DataModel.Quantity.unitsSI property)
JPerMolToEh (samson.DataModel.Quantity.unitsSI property)
JPerMolToeV (samson.DataModel.Quantity.unitsSI property)
JperMolTokcalPerMol (samson.DataModel.Quantity.unitsSI property)
jS (class in samson.DataModel.Quantity)
K
K (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
kA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Kat (class in samson.DataModel.Quantity)
katal (class in samson.DataModel.Quantity)
kB (samson.DataModel.Type.constant attribute)
kcalPerMol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsSI property)
kcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
kDa (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsDalton property)
kelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
kg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsDalton property)
(samson.DataModel.Quantity.unitsSI property)
KHz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
kiloampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
kilocaloriePerMole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsSI property)
kilocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
kilodalton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsDalton property)
kilogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsDalton property)
(samson.DataModel.Quantity.unitsSI property)
kilohertz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
kilojoule (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsSI property)
kilojoulePerMole (class in samson.DataModel.Quantity)
kilokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
kilometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
kilomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
kJ (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsSI property)
kjPerMol (class in samson.DataModel.Quantity)
kK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
km (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
kmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Kr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Krypton (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
KyteDoolittle1982 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
L
La (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Label (class in samson.DataModel.Document)
(samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Label.NodeType (class in samson.DataModel.Document)
LabelFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
Lanthanide (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
Lanthanum (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Lawrencium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Lead (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
leftAtom (samson.Modeling.StructuralModel.Bond property)
leftBackBottomView() (samson.DataModel.Document.Camera method)
leftBackTopView() (samson.DataModel.Document.Camera method)
leftFrontBottomView() (samson.DataModel.Document.Camera method)
leftFrontTopView() (samson.DataModel.Document.Camera method)
leftView() (samson.DataModel.Document.Camera method)
length (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.Modeling.StructuralModel.Bond property)
length3 (class in samson.DataModel.Type)
lengthInterval (class in samson.DataModel.Type)
lengthInterval3 (class in samson.DataModel.Type)
lengthMass (class in samson.DataModel.Quantity)
lengthPerForce (class in samson.DataModel.Quantity)
lengthsSum() (samson.DataModel.Type.intervalVector3 method)
LEU (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Li (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
lightenSRGBColor() (samson.DataModel.Type.ColorConversion static method)
Linear (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Lithium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Livermorium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
localXAxis (samson.DataModel.Type.Color attribute)
localYAxis (samson.DataModel.Type.Color attribute)
localZAxis (samson.DataModel.Type.Color attribute)
lockedFlag (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
log() (in module samson.DataModel.Quantity)
Loop (samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.AnimationType attribute)
lowerBound() (samson.DataModel.Type.intervalVector3 method)
Lr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Lu (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
lumen (class in samson.DataModel.Quantity)
luminance (samson.DataModel.Color.ColorPaletteQualitative property)
(samson.DataModel.Color.ColorPaletteQualitativeHCL property)
luminance1 (samson.DataModel.Color.ColorPaletteDiverging property)
(samson.DataModel.Color.ColorPaletteDivergingHCL property)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
(samson.DataModel.Color.ColorPaletteSequential property)
(samson.DataModel.Color.ColorPaletteSequentialHCL property)
luminance2 (samson.DataModel.Color.ColorPaletteDiverging property)
(samson.DataModel.Color.ColorPaletteDivergingHCL property)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
(samson.DataModel.Color.ColorPaletteSequential property)
(samson.DataModel.Color.ColorPaletteSequentialHCL property)
luminance3 (samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
luminancePower (samson.DataModel.Color.ColorPaletteDiverging property)
(samson.DataModel.Color.ColorPaletteDivergingHCL property)
(samson.DataModel.Color.ColorPaletteSequential property)
(samson.DataModel.Color.ColorPaletteSequentialHCL property)
luminancePower1 (samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
luminancePower2 (samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
luminousIntensity (class in samson.DataModel.Quantity)
Lutetium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
lux (class in samson.DataModel.Quantity)
Lv (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
lx (class in samson.DataModel.Quantity)
(samson.DataModel.Type.vector6 property)
ly (samson.DataModel.Type.vector6 property)
LYS (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
lz (samson.DataModel.Type.vector6 property)
M
m (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsSI property)
mA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
magenta (samson.DataModel.Type.Color attribute)
Magnesium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
magneticDensity (class in samson.DataModel.Quantity)
major (samson.Core.Container.VersionNumber property)
makeAnimation() (in module samson.Facade.SAMSON)
makeEulerRotationZYZ() (samson.DataModel.Type.matrix33 method)
makeInteractionModel() (in module samson.Facade.SAMSON)
makeNeigborSearch() (in module samson.Facade.SAMSON)
makePropertyModel() (in module samson.Facade.SAMSON)
makeSelector() (in module samson.Facade.SAMSON)
makeSimulator() (in module samson.Facade.SAMSON)
makeStateUpdater() (in module samson.Facade.SAMSON)
makeVisualModel() (in module samson.Facade.SAMSON)
Manganese (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
mass (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
mass33 (class in samson.DataModel.Type)
Material (class in samson.DataModel.DataGraph)
Materials (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
matrix33 (class in samson.DataModel.Type)
matrix66 (class in samson.DataModel.Type)
maximumChroma (samson.DataModel.Color.ColorPaletteDiverging property)
(samson.DataModel.Color.ColorPaletteDivergingHCL property)
(samson.DataModel.Color.ColorPaletteSequential property)
(samson.DataModel.Color.ColorPaletteSequentialHCL property)
maximumChroma1 (samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
maximumChroma2 (samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
maximumDisplayRadius (samson.DataModel.Document.Label property)
maximumOpacity (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
maximumTransparency (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
Mc (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
mcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Md (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
MDa (class in samson.DataModel.Quantity)
mDa (samson.DataModel.Quantity.unitsDalton property)
me (class in samson.DataModel.Quantity)
Medicine (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
megadalton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsDalton property)
megahertz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Meitnerium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Mendelevium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Mercury (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Mesh (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
MET (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Metalloid (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
metalSubcategory (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
metalSubcategory() (samson.Modeling.Element.ElementTable static method)
metalSubcategoryString (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
metalSubcategoryString() (samson.Modeling.Element.ElementTable static method)
meter (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsSI property)
Metrology (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
mg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Mg (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
MHz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
microampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
microcandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
microgram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
microkelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
micrometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
micromole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
micron (class in samson.DataModel.Quantity)
microsecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
midPoint (samson.Modeling.StructuralModel.Bond property)
milliampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
millicandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
milligram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
millikelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
millimeter (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
millimole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
millisecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
minimize() (in module samson.Facade.SAMSON)
minimumDisplayRadius (samson.DataModel.Document.Label property)
minimumOpacity (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
minimumTransparency (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
minimumUserPlan (samson.Core.Class.ClassProxy property)
minor (samson.Core.Container.VersionNumber property)
miscellaneousInformation (samson.Modeling.StructuralModel.StructuralModel property)
mK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
mm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
mmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Mn (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Mo (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
mobilityFlag (samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
Model (class in samson.Modeling.Model)
Model.NodeType (class in samson.Modeling.Model)
Modeling (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
ModelNode (class in samson.Modeling.Model)
ModelNode.NodeType (class in samson.Modeling.Model)
modelType (samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
module
samson.Core
samson.Core.Class
samson.Core.Container
samson.Core.Reference
samson.DataModel
samson.DataModel.Asset
samson.DataModel.Color
samson.DataModel.DataGraph
samson.DataModel.Document
samson.DataModel.Quantity
,
[1]
samson.DataModel.Type
samson.DataModel.Visualization
samson.Facade
samson.Facade.SAMSON
samson.GUI
samson.GUI.Action
samson.Modeling
samson.Modeling.DynamicalModel
samson.Modeling.Element
samson.Modeling.InteractionModel
samson.Modeling.Model
samson.Modeling.PropertyModel
samson.Modeling.StructuralModel
samson.Modeling.VisualModel
samson.Simulation
samson.Simulation.NeighborSearch
samson.Simulation.Simulator
samson.Simulation.StateUpdater
mol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
mole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
molecularWeight (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
Molecule (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Molecule.NodeType (class in samson.Modeling.StructuralModel)
moleculeName (samson.Modeling.StructuralModel.Atom property)
Molybdenum (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
momentOfInertia (class in samson.DataModel.Quantity)
momentOfInertia33 (class in samson.DataModel.Type)
momentum (class in samson.DataModel.Quantity)
momentum3 (class in samson.DataModel.Type)
momentumInterval (class in samson.DataModel.Type)
momentumInterval3 (class in samson.DataModel.Type)
MoneraEtAl1995 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
MoonFleming2011 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
Moscovium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Motion (samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.Category attribute)
MotionAnimation (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
motionCrossForce() (samson.DataModel.Type.vector6 method)
moveKeyframe() (samson.DataModel.Document.Animation method)
ms (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Mt (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
N
N (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
nA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
NA (samson.DataModel.Type.constant attribute)
Na (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
name (samson.Core.Class.Class.Category property)
(samson.Core.Class.Class.Type property)
(samson.Core.Class.ClassAttribute property)
(samson.Core.Class.ClassAttribute.Type property)
(samson.Core.Class.ClassProxy property)
(samson.Core.Container.UserPlan.Type property)
(samson.DataModel.Asset.Asset property)
(samson.DataModel.Asset.Asset.NodeType property)
(samson.DataModel.Color.ColorPalette property)
(samson.DataModel.Color.ColorPalette.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteDiverging property)
(samson.DataModel.Color.ColorPaletteDiverging.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteDivergingHCL property)
(samson.DataModel.Color.ColorPaletteDivergingHCL.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteQualitative property)
(samson.DataModel.Color.ColorPaletteQualitative.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteQualitativeHCL property)
(samson.DataModel.Color.ColorPaletteQualitativeHCL.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteSequential property)
(samson.DataModel.Color.ColorPaletteSequential.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteSequentialHCL property)
(samson.DataModel.Color.ColorPaletteSequentialHCL.ColorPaletteType property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Group.NodeType property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.DataGraph.Node.NodeType property)
(samson.DataModel.DataGraph.Selector property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Animation.Category property)
(samson.DataModel.Document.Animation.NodeType property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Camera.NodeType property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Document.NodeType property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Folder.NodeType property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Label.NodeType property)
(samson.DataModel.Document.Presentation property)
(samson.DataModel.Document.Presentation.NodeType property)
(samson.DataModel.Visualization.VisualPresetGroup property)
(samson.GUI.Action.Action property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Group.NodeType property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Node.NodeType property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.Particle.NodeType property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBody.NodeType property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.DynamicalModel.Root.NodeType property)
(samson.Modeling.Element.Element property)
(samson.Modeling.Element.Element.ElementType property)
(samson.Modeling.Element.Element.MetalSubcategory property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.InteractionModel.NodeType property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.Model.NodeType property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.Model.ModelNode.NodeType property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Atom.Geometry property)
(samson.Modeling.StructuralModel.Atom.Hybridization property)
(samson.Modeling.StructuralModel.Atom.NodeType property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Backbone.NodeType property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Bond.BondType property)
(samson.Modeling.StructuralModel.Bond.NodeType property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Chain.NodeType property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Conformation.NodeType property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Group.NodeType property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Molecule.NodeType property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Node.NodeType property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Particle.NodeType property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.Path.AnimationType property)
(samson.Modeling.StructuralModel.Path.NodeType property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale property)
(samson.Modeling.StructuralModel.Residue.NodeType property)
(samson.Modeling.StructuralModel.Residue.ResidueType property)
(samson.Modeling.StructuralModel.Residue.SecondaryStructureType property)
(samson.Modeling.StructuralModel.Residue.SideChainCharge property)
(samson.Modeling.StructuralModel.Residue.SideChainPolarity property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Root.NodeType property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.Segment.NodeType property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.SideChain.NodeType property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.StructuralModel.StructuralModel.NodeType property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Modeling.VisualModel.VisualModel.NodeType property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.Simulator.NodeType property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdater.NodeType property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType property)
nanoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
nanocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
nanogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
nanokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
nanometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsSI property)
nanomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
nanonewton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
nanonewtonPerPicometer (class in samson.DataModel.Quantity)
nanosecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Nb (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ncd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Nd (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Ne (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
nearPlane (samson.DataModel.Document.Camera property)
Negative (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainCharge attribute)
NeighborSearch (class in samson.Simulation.NeighborSearch)
NeighborSearchArticulatedBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
NeighborSearchParticleSystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
NeighborSearchRigidBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
Neodymium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Neon (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Neptunium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Neutral (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainCharge attribute)
neutralPoint (samson.DataModel.Color.ColorPaletteDiverging property)
(samson.DataModel.Color.ColorPaletteDivergingHCL property)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
newton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
ng (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Nh (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Ni (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Nickel (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Nihonium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Niobium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Nitrogen (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
nK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
nm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsSI property)
nmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
nN (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
nNPerPm (class in samson.DataModel.Quantity)
No (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Nobelium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
NobleGas (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
Node (class in samson.DataModel.DataGraph)
(class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
Node.NodeType (class in samson.DataModel.DataGraph)
(class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
NodeGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
NodeGUI (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
nodeIndex (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
NodeIndexer (class in samson.DataModel.DataGraph)
None (samson.Core.Container.UserPlan attribute)
(samson.Core.Container.UserPlan.Type attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
Nonpolar (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainPolarity attribute)
norm() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.vector3 method)
norm2() (samson.DataModel.Type.vector3 method)
normalize() (samson.DataModel.Type.vector3 method)
normalizedVersion() (samson.DataModel.Type.vector3 method)
normalizedVersionWithUnits() (samson.DataModel.Type.vector3 method)
normalizeWithUnits() (samson.DataModel.Type.vector3 method)
Note (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Np (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ns (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
numberOfAtoms (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
numberOfCarbons (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
numberOfChains (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
numberOfChangedForces (samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
numberOfChangedMomentums (samson.Modeling.DynamicalModel.ParticleSystem property)
numberOfElements (samson.Modeling.Element.ElementTable property)
numberOfHydrogens (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
numberOfKeyframes (samson.DataModel.Document.Animation property)
numberOfMolecules (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
numberOfNitrogens (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
numberOfOtherAtoms (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
numberOfOxygens (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
numberOfResidues (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
numberOfSegments (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
numberOfSteps (samson.Modeling.StructuralModel.Path property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
numberOfStructuralGroups (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
numberOfStructuralModels (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
numberOfStructuralParticles (samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Path property)
numberOfSulfurs (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
O
O (class in samson.DataModel.Quantity)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
occupancy (samson.Modeling.StructuralModel.Atom property)
Octahedral (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Og (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Oganesson (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ohm (class in samson.DataModel.Quantity)
Once (samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.AnimationType attribute)
opacity (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
Optics (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
orange (samson.DataModel.Type.Color attribute)
order (samson.Modeling.StructuralModel.Bond property)
orientAminoAcidSideChain() (samson.Modeling.StructuralModel.Residue method)
orthographicProjectionFlag (samson.DataModel.Document.Camera property)
orthonormalize() (samson.DataModel.Type.matrix33 method)
Os (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Osmium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Other (samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.Category attribute)
OtherAnimation (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
overlaps() (samson.DataModel.Type.intervalVector3 method)
overlapsAdvanced() (samson.DataModel.Type.intervalVector3 method)
ownsMaterial (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
oxidationState (samson.Modeling.StructuralModel.Atom property)
Oxygen (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
P
P (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Pa (class in samson.DataModel.Quantity)
pA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Pa (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Palladium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
partialCharge (samson.Modeling.StructuralModel.Atom property)
Particle (class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
Particle.NodeType (class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
Particles (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
ParticleSystem (class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.InteractionModel)
(class in samson.Simulation.NeighborSearch)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
ParticleSystem.NodeType (class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.InteractionModel)
ParticleSystemGrid (class in samson.Simulation.NeighborSearch)
ParticleSystemGridPBC (class in samson.Simulation.NeighborSearch)
ParticleSystemPBC (class in samson.Simulation.NeighborSearch)
Pascal (class in samson.DataModel.Quantity)
patch (samson.Core.Container.VersionNumber property)
Path (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Path.AnimationType (class in samson.Modeling.StructuralModel)
Path.NodeType (class in samson.Modeling.StructuralModel)
Pb (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
pcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Pd (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
PentagonalBipyramidal (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
PentagonalPlanar (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
PentagonalPyramidal (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
period (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
periodicBoundaryConditionsFlag (samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
perS (class in samson.DataModel.Quantity)
perSecond (class in samson.DataModel.Quantity)
perYgPerSquarePm (class in samson.DataModel.Quantity)
perYoctogramPerSquarePicometer (class in samson.DataModel.Quantity)
pg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Pharmacy (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
PHE (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Phosphorus (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Photonics (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Physics (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Pi (samson.DataModel.Type.constant attribute)
picoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
picocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
picogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
picokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
picometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsSI property)
picometerPerFemtosecond (class in samson.DataModel.Quantity)
picometerPerSecond (class in samson.DataModel.Quantity)
picometerPerSecond3 (class in samson.DataModel.Type)
picometerPerSquareFemtosecond (class in samson.DataModel.Quantity)
picomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
piconewton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
picosecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
pK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Platinum (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Plutonium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
pm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsSI property)
Pm (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
pmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
pmPerFs (class in samson.DataModel.Quantity)
pmPerS (class in samson.DataModel.Quantity)
pmPerSquareFs (class in samson.DataModel.Quantity)
pN (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Po (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Polar (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainPolarity attribute)
Polonium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
populateChainIDs() (samson.Modeling.StructuralModel.StructuralModel method)
position (class in samson.DataModel.Quantity)
position3 (class in samson.DataModel.Type)
positionInterval (class in samson.DataModel.Type)
positionInterval3 (class in samson.DataModel.Type)
Positive (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainCharge attribute)
PosttransitionMetal (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
Potassium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
pow() (in module samson.DataModel.Quantity)
Pr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Praseodymium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Presentation (class in samson.DataModel.Document)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Presentation.NodeType (class in samson.DataModel.Document)
pressure (class in samson.DataModel.Quantity)
primaryStructureInformation (samson.Modeling.StructuralModel.StructuralModel property)
printDataGraphState() (in module samson.Facade.SAMSON)
printDebugInfo() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.DataGraph.NodeIndexer method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.DataModel.Type.Color method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.Element.Element method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
printFullMemoryUsage() (in module samson.Facade.SAMSON)
printMemoryUsage() (in module samson.Facade.SAMSON)
printRendererState() (in module samson.Facade.SAMSON)
printUndoStack() (in module samson.Facade.SAMSON)
PRO (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
processEvents() (in module samson.Facade.SAMSON)
Professional (samson.Core.Container.UserPlan attribute)
(samson.Core.Container.UserPlan.Type attribute)
Promethium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Properties (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
PropertyModel (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
PropertyModelFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
PropertyModelFunction (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Protactinium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Protein (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
protonMass (samson.DataModel.Type.constant attribute)
ps (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
PseudoAtom (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
PseudoAtom.NodeType (class in samson.Modeling.StructuralModel)
PseudoBond (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Pt (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Pu (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
publicName (samson.Core.Class.ClassProxy property)
PushButton (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
PYL (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Q
Qualitative (samson.DataModel.Color.ColorPalette attribute)
(samson.DataModel.Color.ColorPalette.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDiverging.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitative.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequential.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL.ColorPaletteType attribute)
qualitativeHCLBlue2Green (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLBlue2GreenDark (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLBlue2Red (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLBlue2RedDark (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLCold (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLDark2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLDark3 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLDefault (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLDynamic (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLGreen2Blue (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLGreen2BlueDark (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLGreen2Red (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLGreen2RedDark (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLHarmonic (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLPastel (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLRed2Blue (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLRed2BlueDark (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLRed2Green (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLRed2GreenDark (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLSet2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLSet3 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLWarm (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
quasiStaticUpdate() (samson.DataModel.Type.matrix33 method)
R
Ra (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
rad (class in samson.DataModel.Quantity)
radian (class in samson.DataModel.Quantity)
radian3 (class in samson.DataModel.Type)
radianInterval3 (class in samson.DataModel.Type)
radianPerSecond (class in samson.DataModel.Quantity)
radianPerSecond3 (class in samson.DataModel.Type)
radianPerSecondInterval3 (class in samson.DataModel.Type)
Radium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Radon (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
radPerS (class in samson.DataModel.Quantity)
RadToDeg (samson.DataModel.Type.constant attribute)
randDouble1() (samson.DataModel.Type.random method)
randDouble2() (samson.DataModel.Type.random method)
randDouble3() (samson.DataModel.Type.random method)
randLong() (samson.DataModel.Type.random method)
random (class in samson.DataModel.Type)
randRes53() (samson.DataModel.Type.random method)
randUnitSphere3() (samson.DataModel.Type.random method)
randUnsignedLong() (samson.DataModel.Type.random method)
randUUID() (samson.DataModel.Type.random method)
Rb (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Re (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ReactiveNonmetal (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
ReadOnly (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
ReadWrite (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
ReadWriteClear (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
ReadWriteClearArray (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
ReadWriteList (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
ReadWriteRange (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
ReadWriteRangeSlider (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
recordTypeSize (samson.Modeling.StructuralModel.Atom property)
red (samson.DataModel.Type.Color attribute)
redInt (samson.DataModel.Type.Color property)
redo() (in module samson.Facade.SAMSON)
ReferenceIndexer (class in samson.Core.Reference)
ReferenceTarget (class in samson.Core.Reference)
remove() (samson.Modeling.StructuralModel.Path method)
removeChild() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
removeGroupNodesFromSelection() (samson.DataModel.Document.Document method)
removeHydrogens() (samson.Modeling.StructuralModel.Atom method)
removeKeyframe() (samson.DataModel.Document.Animation method)
removeMaterial() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
removeNode() (samson.DataModel.DataGraph.NodeIndexer method)
removeNodeFromSelection() (samson.DataModel.Document.Document method)
removeParticle() (samson.Modeling.DynamicalModel.ParticleSystem method)
removeParticles() (samson.Modeling.DynamicalModel.ParticleSystem method)
removeStructuralParticle() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
RenderProgram (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
replaceAtom() (samson.Modeling.StructuralModel.StructuralModel static method)
replaceBond() (samson.Modeling.StructuralModel.StructuralModel static method)
requestViewportUpdate() (in module samson.Facade.SAMSON)
reset() (samson.DataModel.Type.intervalVector3 method)
Residue (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Residue.HydrophobicityScale (class in samson.Modeling.StructuralModel)
Residue.NodeType (class in samson.Modeling.StructuralModel)
Residue.ResidueType (class in samson.Modeling.StructuralModel)
Residue.SecondaryStructureType (class in samson.Modeling.StructuralModel)
Residue.SideChainCharge (class in samson.Modeling.StructuralModel)
Residue.SideChainPolarity (class in samson.Modeling.StructuralModel)
residueName (samson.Modeling.StructuralModel.Atom property)
residueSequenceNumber (samson.Modeling.StructuralModel.Atom property)
residueSequenceNumberString (samson.Modeling.StructuralModel.Atom property)
residueType (samson.Modeling.StructuralModel.Residue property)
residueTypeFullName (samson.Modeling.StructuralModel.Residue property)
residueTypeString (samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Residue property)
resonance (samson.Modeling.StructuralModel.Atom property)
restore() (samson.Modeling.StructuralModel.Conformation method)
reverseFlag (samson.DataModel.Color.ColorPalette property)
(samson.DataModel.Color.ColorPaletteDiverging property)
(samson.DataModel.Color.ColorPaletteDivergingHCL property)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
(samson.DataModel.Color.ColorPaletteQualitative property)
(samson.DataModel.Color.ColorPaletteQualitativeHCL property)
(samson.DataModel.Color.ColorPaletteSequential property)
(samson.DataModel.Color.ColorPaletteSequentialHCL property)
revoluteJointZAxisMatrix() (samson.DataModel.Type.matrix33 method)
Rf (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Rg (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
RGBfromCIEXYZ() (samson.DataModel.Type.ColorConversion static method)
RGBfromSRGB() (samson.DataModel.Type.ColorConversion static method)
Rh (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Rhenium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Rhodium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
RichTextReadOnly (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
RichTextReadWrite (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
RichTextReadWriteClear (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
rightAtom (samson.Modeling.StructuralModel.Bond property)
rightBackBottomView() (samson.DataModel.Document.Camera method)
rightBackTopView() (samson.DataModel.Document.Camera method)
rightFrontBottomView() (samson.DataModel.Document.Camera method)
rightFrontTopView() (samson.DataModel.Document.Camera method)
rightMultiply3D() (samson.DataModel.Type.spatialTransform method)
rightMultiplyInverse3D() (samson.DataModel.Type.spatialTransform method)
rightView() (samson.DataModel.Document.Camera method)
RigidBody (class in samson.Modeling.DynamicalModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
RigidBody.NodeType (class in samson.Modeling.DynamicalModel)
RigidBodySystem (class in samson.Modeling.DynamicalModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
RigidBodySystem.NodeType (class in samson.Modeling.DynamicalModel)
Rn (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Roentgenium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Root (class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
root() (in module samson.DataModel.Quantity)
Root.NodeType (class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
rotate() (samson.DataModel.Document.Camera method)
(samson.Modeling.StructuralModel.StructuralModel method)
rotateClockwise() (samson.DataModel.Document.Camera method)
rotateCounterClockwise() (samson.DataModel.Document.Camera method)
rotateDown() (samson.DataModel.Document.Camera method)
rotateLeft() (samson.DataModel.Document.Camera method)
rotateRight() (samson.DataModel.Document.Camera method)
rotateUp() (samson.DataModel.Document.Camera method)
round() (in module samson.DataModel.Quantity)
roundForPBC() (samson.Modeling.DynamicalModel.ParticleSystem method)
Ru (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Rubidium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Ruthenium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Rutherfordium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
S
S (class in samson.DataModel.Quantity)
s (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsSI property)
S (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Samarium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
samson.Core
module
samson.Core.Class
module
samson.Core.Container
module
samson.Core.Reference
module
samson.DataModel
module
samson.DataModel.Asset
module
samson.DataModel.Color
module
samson.DataModel.DataGraph
module
samson.DataModel.Document
module
samson.DataModel.Quantity
module
,
[1]
samson.DataModel.Type
module
samson.DataModel.Visualization
module
samson.Facade
module
samson.Facade.SAMSON
module
samson.GUI
module
samson.GUI.Action
module
samson.Modeling
module
samson.Modeling.DynamicalModel
module
samson.Modeling.Element
module
samson.Modeling.InteractionModel
module
samson.Modeling.Model
module
samson.Modeling.PropertyModel
module
samson.Modeling.StructuralModel
module
samson.Modeling.VisualModel
module
samson.Simulation
module
samson.Simulation.NeighborSearch
module
samson.Simulation.Simulator
module
samson.Simulation.StateUpdater
module
Sb (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Sc (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Scandium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
SDKVersionNumber (samson.Core.Class.ClassProxy property)
Se (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Seaborgium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
SEC (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
second (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsSI property)
secondaryStructureInformation (samson.Modeling.StructuralModel.StructuralModel property)
secondaryStructureType (samson.Modeling.StructuralModel.Residue property)
secondaryStructureTypeString (samson.Modeling.StructuralModel.Residue property)
seed() (samson.DataModel.Type.random method)
Seesaw (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Segment (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Segment.NodeType (class in samson.Modeling.StructuralModel)
segmentName (samson.Modeling.StructuralModel.Atom property)
selectGroupNodes() (samson.DataModel.Document.Document method)
selectionFlag (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
Selector (class in samson.DataModel.DataGraph)
(samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
selectorClassName (samson.DataModel.Visualization.VisualPreset property)
selectorElementUUID (samson.DataModel.Visualization.VisualPreset property)
Selenium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Sequential (samson.DataModel.Color.ColorPalette attribute)
(samson.DataModel.Color.ColorPalette.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDiverging.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitative.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequential.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL.ColorPaletteType attribute)
sequentialHCLBlue (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLBlue2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLBlueGreenYellow (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLBlueYellow (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLBlueYellow2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLDarkMint (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLGray (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLGreen (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLGreen2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLGreenYellow (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLHeat (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLInferno (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLLightGray (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLOslo (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLPlasma (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLPurple (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLPurple2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLPurpleBlue (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLPurpleOrange (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLRed (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLRed2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLRedYellow (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLTeal (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLViridis (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
SER (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
SeredaEtAl1994 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
serialNumber (samson.Modeling.StructuralModel.Atom property)
setActiveCamera() (samson.DataModel.Document.Document method)
setActiveDocumentFilter() (in module samson.Facade.SAMSON)
setActiveEditor() (in module samson.Facade.SAMSON)
setActivePresentation() (samson.DataModel.Document.Document method)
setActiveStructuralModel() (in module samson.Facade.SAMSON)
(samson.DataModel.Document.Document method)
setActivityFlag() (samson.Modeling.DynamicalModel.ParticleSystem method)
setBusy() (in module samson.Facade.SAMSON)
setChroma() (samson.DataModel.Color.ColorPaletteDiverging method)
(samson.DataModel.Color.ColorPaletteDivergingHCL method)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL method)
(samson.DataModel.Color.ColorPaletteSequential method)
(samson.DataModel.Color.ColorPaletteSequentialHCL method)
setColor() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.DataModel.Visualization.VisualPreset method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
setColorPalette() (samson.DataModel.Color.ColorSchemePerAttribute_dimensionless method)
(samson.DataModel.Color.ColorSchemePerAttribute_double method)
(samson.DataModel.Color.ColorSchemePerAttribute_float method)
(samson.DataModel.Color.ColorSchemePerAttribute_int method)
(samson.DataModel.Color.ColorSchemePerChainID method)
(samson.DataModel.Color.ColorSchemePerChainIllustrate method)
(samson.DataModel.Color.ColorSchemePerFormalCharge method)
(samson.DataModel.Color.ColorSchemePerOccupancy method)
(samson.DataModel.Color.ColorSchemePerPartialCharge method)
(samson.DataModel.Color.ColorSchemePerResidueHydrophobicity method)
(samson.DataModel.Color.ColorSchemePerResidueSequenceNumber method)
(samson.DataModel.Color.ColorSchemePerResidueType method)
(samson.DataModel.Color.ColorSchemePerSecondaryStructureType method)
(samson.DataModel.Color.ColorSchemePerSideChainCharge method)
(samson.DataModel.Color.ColorSchemePerSideChainPolarity method)
(samson.DataModel.Color.ColorSchemePerTemperatureFactor method)
(samson.DataModel.Visualization.VisualPreset method)
setColorPaletteToDefaultColorPaletteForCurrentColorScheme() (samson.DataModel.Visualization.VisualPreset method)
setColorScheme() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Material method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
setColorSchemeProxy() (samson.DataModel.Visualization.VisualPreset method)
setComment() (samson.Modeling.StructuralModel.Atom method)
setCurrentSelectionFilter() (in module samson.Facade.SAMSON)
setE1() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.spatialTransform method)
setE2() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.spatialTransform method)
setE3() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.spatialTransform method)
setE4() (samson.DataModel.Type.spatialTransform method)
setEmpty() (samson.DataModel.Type.spatialDomain method)
setEnergy() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setEnergyData() (samson.Modeling.StructuralModel.Path method)
setEyeDestination() (samson.DataModel.Document.Camera method)
setEyePosition() (samson.DataModel.Document.Camera method)
setEyeVelocity() (samson.DataModel.Document.Camera method)
setForce() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setForceData() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setHeadPosition() (samson.DataModel.Document.Camera method)
setHue() (samson.DataModel.Color.ColorPaletteDiverging method)
(samson.DataModel.Color.ColorPaletteDivergingHCL method)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL method)
(samson.DataModel.Color.ColorPaletteQualitative method)
(samson.DataModel.Color.ColorPaletteQualitativeHCL method)
(samson.DataModel.Color.ColorPaletteSequential method)
(samson.DataModel.Color.ColorPaletteSequentialHCL method)
setIdentity() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialTransform method)
setLuminance() (samson.DataModel.Color.ColorPaletteDiverging method)
(samson.DataModel.Color.ColorPaletteDivergingHCL method)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL method)
(samson.DataModel.Color.ColorPaletteSequential method)
(samson.DataModel.Color.ColorPaletteSequentialHCL method)
setMass() (samson.Modeling.DynamicalModel.ParticleSystem method)
setMaterial() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
setMomentum() (samson.Modeling.DynamicalModel.ParticleSystem method)
setName() (samson.Modeling.StructuralModel.Residue method)
setOrientation() (samson.DataModel.Type.spatialTransform method)
(samson.Modeling.StructuralModel.StructuralModel method)
setPeriodicBoundaryConditions() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
setPosition() (samson.DataModel.Type.spatialTransform method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.StructuralModel method)
setPositionData() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setPositionOnTetrahedron() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
setProgressBarValue() (in module samson.Facade.SAMSON)
setRotationVelocity() (samson.DataModel.Document.Camera method)
setSelectorProxy() (samson.DataModel.Visualization.VisualPreset method)
setSimulationFlag() (in module samson.Facade.SAMSON)
setStatusBit() (samson.Modeling.StructuralModel.Atom method)
setStatusMessage() (in module samson.Facade.SAMSON)
setSYBYLType() (samson.Modeling.StructuralModel.Atom method)
setTargetDestination() (samson.DataModel.Document.Camera method)
setTargetPosition() (samson.DataModel.Document.Camera method)
setTargetVelocity() (samson.DataModel.Document.Camera method)
setTime() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setTimeData() (samson.Modeling.StructuralModel.Path method)
setTransform() (samson.Modeling.StructuralModel.StructuralModel method)
setup() (samson.GUI.Action.Action method)
setUpVector() (samson.DataModel.Document.Camera method)
setUpVectorDestination() (samson.DataModel.Document.Camera method)
setVelocity() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setVelocityData() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setViewportOffset() (samson.DataModel.Document.Label method)
setVisualModelProxy() (samson.DataModel.Visualization.VisualPreset method)
setX() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
setY() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
setZ() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
setZero() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
Sg (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
shortcut (samson.Core.Class.ClassProxy property)
showProgressBar() (in module samson.Facade.SAMSON)
showProperties() (in module samson.Facade.SAMSON)
shrink() (samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
Si (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
SideChain (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
SideChain.NodeType (class in samson.Modeling.StructuralModel)
sideChainCharge (samson.Modeling.StructuralModel.Residue property)
sideChainChargeString (samson.Modeling.StructuralModel.Residue property)
sideChainPolarity (samson.Modeling.StructuralModel.Residue property)
sideChainPolarityString (samson.Modeling.StructuralModel.Residue property)
siemens (class in samson.DataModel.Quantity)
sievert (class in samson.DataModel.Quantity)
Silicon (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Silver (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Simulation (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Simulator (class in samson.Simulation.Simulator)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Simulator.NodeType (class in samson.Simulation.Simulator)
SimulatorArticulatedBodySystem (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
SimulatorParticleSystem (class in samson.Simulation.Simulator)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
SimulatorParticleSystem.NodeType (class in samson.Simulation.Simulator)
SimulatorRigidBodySystem (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
simulatorType (samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
sin() (in module samson.DataModel.Quantity)
Single (samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
size (samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.NodeIndexer property)
sizeOfUnitSystem (samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsDalton property)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsKilocaloriePerMole property)
(samson.DataModel.Quantity.unitsSI property)
Sm (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
smoothingWindowSize (samson.Modeling.StructuralModel.Path property)
Sn (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
snap() (in module samson.Facade.SAMSON)
Sodium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
SP (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
SP2 (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
SP3 (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
SP3D (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
SP3D2 (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
spatialDomain (class in samson.DataModel.Type)
spatialTransform (class in samson.DataModel.Type)
speedOfLight (samson.DataModel.Type.constant attribute)
split() (samson.DataModel.Type.intervalVector3 method)
sqrt() (in module samson.DataModel.Quantity)
squareAm (class in samson.DataModel.Quantity)
squareAmountOfSubstance (class in samson.DataModel.Quantity)
squareAngstrom (class in samson.DataModel.Quantity)
SquareAntiprismatic (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
squareAttometer (class in samson.DataModel.Quantity)
squareCentimeter (class in samson.DataModel.Quantity)
squareCm (class in samson.DataModel.Quantity)
squareDam (class in samson.DataModel.Quantity)
squareDecameter (class in samson.DataModel.Quantity)
squareDecimeter (class in samson.DataModel.Quantity)
squareDistance (class in samson.DataModel.Quantity)
squareDm (class in samson.DataModel.Quantity)
squareFemtometer (class in samson.DataModel.Quantity)
squareFm (class in samson.DataModel.Quantity)
squareHectometer (class in samson.DataModel.Quantity)
squareHm (class in samson.DataModel.Quantity)
squareIntensity (class in samson.DataModel.Quantity)
squareKilometer (class in samson.DataModel.Quantity)
squareKm (class in samson.DataModel.Quantity)
squareLength (class in samson.DataModel.Quantity)
squareLength3 (class in samson.DataModel.Type)
squareLengthInterval (class in samson.DataModel.Type)
squareLuminousIntensity (class in samson.DataModel.Quantity)
squareM (class in samson.DataModel.Quantity)
squareMass (class in samson.DataModel.Quantity)
squareMeter (class in samson.DataModel.Quantity)
squareMicrometer (class in samson.DataModel.Quantity)
squareMillimeter (class in samson.DataModel.Quantity)
squareMm (class in samson.DataModel.Quantity)
squareNanometer (class in samson.DataModel.Quantity)
squareNm (class in samson.DataModel.Quantity)
squarePicometer (class in samson.DataModel.Quantity)
SquarePlanar (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
squarePm (class in samson.DataModel.Quantity)
SquarePyramidal (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
squareTemperature (class in samson.DataModel.Quantity)
squareTime (class in samson.DataModel.Quantity)
squareUm (class in samson.DataModel.Quantity)
squareYm (class in samson.DataModel.Quantity)
squareYoctometer (class in samson.DataModel.Quantity)
squareZeptometer (class in samson.DataModel.Quantity)
squareZm (class in samson.DataModel.Quantity)
sr (class in samson.DataModel.Quantity)
Sr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
SRGBfromCIELab() (samson.DataModel.Type.ColorConversion static method)
SRGBfromCIEXYZ() (samson.DataModel.Type.ColorConversion static method)
SRGBfromCylindricalCIELab() (samson.DataModel.Type.ColorConversion static method)
SRGBfromCylindricalCIELuv() (samson.DataModel.Type.ColorConversion static method)
SRGBfromHCL() (samson.DataModel.Type.ColorConversion static method)
SRGBfromHSV() (samson.DataModel.Type.ColorConversion static method)
SRGBfromRGB() (samson.DataModel.Type.ColorConversion static method)
Standard (samson.Core.Container.UserPlan attribute)
(samson.Core.Container.UserPlan.Type attribute)
Starter (samson.Core.Container.UserPlan attribute)
(samson.Core.Container.UserPlan.Type attribute)
startSimulation() (in module samson.Facade.SAMSON)
startTimer() (in module samson.Facade.SAMSON)
StateUpdater (class in samson.Simulation.StateUpdater)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StateUpdater.NodeType (class in samson.Simulation.StateUpdater)
StateUpdaterArticulatedBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StateUpdaterParticleSystem (class in samson.Simulation.StateUpdater)
(samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StateUpdaterParticleSystem.NodeType (class in samson.Simulation.StateUpdater)
StateUpdaterRigidBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
stateUpdaterType (samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
statusBit (samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
statusBitSize (samson.Modeling.StructuralModel.Atom property)
stepDuration (samson.Modeling.StructuralModel.Path property)
stepSize (samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
steradian (class in samson.DataModel.Quantity)
stop() (samson.DataModel.Document.Camera method)
stopSimulation() (in module samson.Facade.SAMSON)
stopTimer() (in module samson.Facade.SAMSON)
str() (samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialDomain method)
(samson.DataModel.Type.spatialTransform method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
stride (samson.Modeling.StructuralModel.Path property)
Strontium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
StructuralGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
structuralID (samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
StructuralModel (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModel.NodeType (class in samson.Modeling.StructuralModel)
StructuralModelConformation (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
StructuralModelNode (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeAtom (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeBackbone (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeBond (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeChain (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeHydrogenBond (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeHydrogenBondGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeMolecule (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeParticle (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeProtein (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodePseudoAtom (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodePseudoBond (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeResidue (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeRoot (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeSegment (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeSideChain (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelPath (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralParticle (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
substructureName (samson.Modeling.StructuralModel.Atom property)
substructureSequenceNumber (samson.Modeling.StructuralModel.Atom property)
substructureSequenceNumberString (samson.Modeling.StructuralModel.Atom property)
Sulfur (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
sumOfFormalCharges (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
sumOfPartialCharges (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
Sv (class in samson.DataModel.Quantity)
swap() (samson.DataModel.Type.vector3 method)
swapColumns() (samson.DataModel.Type.matrix33 method)
swapRows() (samson.DataModel.Type.matrix33 method)
SYBYLTypeSize (samson.Modeling.StructuralModel.Atom property)
symbol (samson.Modeling.Element.Element property)
symmetrize() (samson.DataModel.Type.matrix66 method)
T
T (class in samson.DataModel.Quantity)
Ta (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
tan() (in module samson.DataModel.Quantity)
Tantalum (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Tb (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Tc (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Te (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Technetium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Tellurium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
temperature (class in samson.DataModel.Quantity)
temperatureFactor (samson.Modeling.StructuralModel.Atom property)
Tennessine (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Terbium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
tesla (class in samson.DataModel.Quantity)
Tetrahedral (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
text (samson.DataModel.Document.Label property)
Th (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Thallium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Thorium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
THR (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Thulium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
thumbnailFileName (samson.DataModel.Asset.Asset property)
Ti (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
time (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
Tin (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Titanium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
titleInformation (samson.Modeling.StructuralModel.StructuralModel property)
Tl (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Tm (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
toDebugString() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
toggleSimulation() (in module samson.Facade.SAMSON)
toHCL() (samson.DataModel.Type.ColorConversion static method)
toHSV() (samson.DataModel.Type.ColorConversion static method)
toolTip (samson.Core.Class.ClassAttribute property)
tooltip (samson.Core.Class.ClassProxy property)
topView() (samson.DataModel.Document.Camera method)
toQuaternion() (samson.DataModel.Type.matrix33 method)
toRotationVector() (samson.DataModel.Type.matrix33 method)
torque3 (class in samson.DataModel.Type)
toString() (samson.Core.Container.UserPlan method)
(samson.Core.Container.UUID method)
(samson.Core.Container.VersionNumber method)
(samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Animation method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Document.Presentation method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.Color method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
Toxicology (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
trace() (samson.DataModel.Type.matrix33 method)
transform() (samson.DataModel.Document.Camera method)
(samson.Modeling.StructuralModel.StructuralModel method)
transformAcceleration() (samson.DataModel.Type.spatialTransform method)
transformForce() (samson.DataModel.Type.spatialTransform method)
transformInertia() (samson.DataModel.Type.spatialTransform method)
transformInertiaLeft() (samson.DataModel.Type.spatialTransform method)
transformInertiaRight() (samson.DataModel.Type.spatialTransform method)
transformInverseInertia() (samson.DataModel.Type.spatialTransform method)
transformInverseInertiaLeft() (samson.DataModel.Type.spatialTransform method)
transformInverseInertiaRight() (samson.DataModel.Type.spatialTransform method)
transformInverseInertiaTransposeRight() (samson.DataModel.Type.spatialTransform method)
transformPoint() (samson.DataModel.Type.spatialTransform method)
transformVelocity() (samson.DataModel.Type.spatialTransform method)
TransitionMetal (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
translate() (samson.DataModel.Document.Camera method)
(samson.Modeling.StructuralModel.StructuralModel method)
transparency (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
transpose() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
TricappedTrigonalPrismatic (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
trigger() (samson.GUI.Action.Action method)
TrigonalBipyramidal (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
TrigonalPlanar (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
TrigonalPrismatic (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
TrigonalPyramidal (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Triple (samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
TRP (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
trunc() (in module samson.DataModel.Quantity)
Ts (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
TShaped (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Tungsten (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Tutorial (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
type (samson.Core.Class.ClassAttribute property)
(samson.Core.Class.ClassProxy property)
(samson.Core.Container.UserPlan property)
(samson.DataModel.Asset.Asset property)
(samson.DataModel.Color.ColorPalette property)
(samson.DataModel.Color.ColorPaletteDiverging property)
(samson.DataModel.Color.ColorPaletteDivergingHCL property)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL property)
(samson.DataModel.Color.ColorPaletteQualitative property)
(samson.DataModel.Color.ColorPaletteQualitativeHCL property)
(samson.DataModel.Color.ColorPaletteSequential property)
(samson.DataModel.Color.ColorPaletteSequentialHCL property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.Element.Element property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
typeString (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
TYR (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
U
u (class in samson.DataModel.Quantity)
U (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
uA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
ucd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
ug (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
uK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
um (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
umol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Un (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Undefined (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
UndefinedSideChainCharge (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainCharge attribute)
UndefinedSideChainPolarity (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainPolarity attribute)
undo() (in module samson.Facade.SAMSON)
unifiedAtomicMassUnit (class in samson.DataModel.Quantity)
unitsAU (class in samson.DataModel.Quantity)
unitsDalton (class in samson.DataModel.Quantity)
unitsElectronvolt (class in samson.DataModel.Quantity)
unitsKilocaloriePerMole (class in samson.DataModel.Quantity)
unitsSI (class in samson.DataModel.Quantity)
Unknown (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
Unstructured (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SecondaryStructureType attribute)
update() (samson.Modeling.StructuralModel.Grid method)
updateInteractions() (samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
updateNeighborLists() (samson.Simulation.NeighborSearch.ParticleSystem method)
(samson.Simulation.NeighborSearch.ParticleSystemGrid method)
(samson.Simulation.NeighborSearch.ParticleSystemGridPBC method)
(samson.Simulation.NeighborSearch.ParticleSystemPBC method)
updateState() (samson.DataModel.Document.Camera method)
(samson.Modeling.StructuralModel.Path method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
updateStructuralNodes() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
updateText() (samson.DataModel.Document.Label method)
upperBound() (samson.DataModel.Type.intervalVector3 method)
Uranium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
us (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
UserPlan (class in samson.Core.Container)
UserPlan.Type (class in samson.Core.Container)
UUID (class in samson.Core.Container)
(samson.Core.Class.ClassProxy property)
(samson.DataModel.Asset.Asset property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.GUI.Action.Action property)
V
V (class in samson.DataModel.Quantity)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
VAL (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
value (samson.Core.Class.Class.Category property)
(samson.Core.Class.Class.Type property)
(samson.Core.Class.ClassAttribute.Type property)
(samson.Core.Container.UserPlan.Type property)
(samson.DataModel.Asset.Asset.NodeType property)
(samson.DataModel.Color.ColorPalette.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteDiverging.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteDivergingHCL.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteFlexibleDivergingHCL.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteQualitative.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteQualitativeHCL.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteSequential.ColorPaletteType property)
(samson.DataModel.Color.ColorPaletteSequentialHCL.ColorPaletteType property)
(samson.DataModel.DataGraph.Group.NodeType property)
(samson.DataModel.DataGraph.Node.NodeType property)
(samson.DataModel.Document.Animation.Category property)
(samson.DataModel.Document.Animation.NodeType property)
(samson.DataModel.Document.Camera.NodeType property)
(samson.DataModel.Document.Document.NodeType property)
(samson.DataModel.Document.Folder.NodeType property)
(samson.DataModel.Document.Label.NodeType property)
(samson.DataModel.Document.Presentation.NodeType property)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsDalton property)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsKilocaloriePerMole property)
(samson.DataModel.Quantity.unitsSI property)
(samson.DataModel.Type.interval property)
(samson.DataModel.Type.intervalVector3 property)
(samson.DataModel.Type.matrix33 property)
(samson.DataModel.Type.matrix66 property)
(samson.DataModel.Type.vector3 property)
(samson.DataModel.Type.vector6 property)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType property)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType property)
(samson.Modeling.DynamicalModel.Group.NodeType property)
(samson.Modeling.DynamicalModel.Node.NodeType property)
(samson.Modeling.DynamicalModel.Particle.NodeType property)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType property)
(samson.Modeling.DynamicalModel.RigidBody.NodeType property)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType property)
(samson.Modeling.DynamicalModel.Root.NodeType property)
(samson.Modeling.Element.Element.ElementType property)
(samson.Modeling.Element.Element.MetalSubcategory property)
(samson.Modeling.InteractionModel.InteractionModel.NodeType property)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType property)
(samson.Modeling.Model.Model.NodeType property)
(samson.Modeling.Model.ModelNode.NodeType property)
(samson.Modeling.StructuralModel.Atom.Geometry property)
(samson.Modeling.StructuralModel.Atom.Hybridization property)
(samson.Modeling.StructuralModel.Atom.NodeType property)
(samson.Modeling.StructuralModel.Backbone.NodeType property)
(samson.Modeling.StructuralModel.Bond.BondType property)
(samson.Modeling.StructuralModel.Bond.NodeType property)
(samson.Modeling.StructuralModel.Chain.NodeType property)
(samson.Modeling.StructuralModel.Conformation.NodeType property)
(samson.Modeling.StructuralModel.Group.NodeType property)
(samson.Modeling.StructuralModel.Molecule.NodeType property)
(samson.Modeling.StructuralModel.Node.NodeType property)
(samson.Modeling.StructuralModel.Particle.NodeType property)
(samson.Modeling.StructuralModel.Path.AnimationType property)
(samson.Modeling.StructuralModel.Path.NodeType property)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType property)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale property)
(samson.Modeling.StructuralModel.Residue.NodeType property)
(samson.Modeling.StructuralModel.Residue.ResidueType property)
(samson.Modeling.StructuralModel.Residue.SecondaryStructureType property)
(samson.Modeling.StructuralModel.Residue.SideChainCharge property)
(samson.Modeling.StructuralModel.Residue.SideChainPolarity property)
(samson.Modeling.StructuralModel.Root.NodeType property)
(samson.Modeling.StructuralModel.Segment.NodeType property)
(samson.Modeling.StructuralModel.SideChain.NodeType property)
(samson.Modeling.StructuralModel.StructuralModel.NodeType property)
(samson.Modeling.VisualModel.VisualModel.NodeType property)
(samson.Simulation.Simulator.Simulator.NodeType property)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType property)
(samson.Simulation.StateUpdater.StateUpdater.NodeType property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType property)
Vanadium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
vanDerWaalsRadius (samson.Modeling.Element.Element property)
(samson.Modeling.StructuralModel.Atom property)
vector3 (class in samson.DataModel.Type)
vector6 (class in samson.DataModel.Type)
velocity (class in samson.DataModel.Quantity)
velocity3 (class in samson.DataModel.Type)
velocity6 (class in samson.DataModel.Type)
velocityInterval (class in samson.DataModel.Type)
velocityInterval3 (class in samson.DataModel.Type)
VersionNumber (class in samson.Core.Container)
versionNumber (samson.Core.Class.ClassProxy property)
visibilityFlag (samson.DataModel.Asset.Asset property)
(samson.DataModel.DataGraph.Group property)
(samson.DataModel.DataGraph.Node property)
(samson.DataModel.Document.Animation property)
(samson.DataModel.Document.Camera property)
(samson.DataModel.Document.Document property)
(samson.DataModel.Document.Folder property)
(samson.DataModel.Document.Label property)
(samson.DataModel.Document.Presentation property)
(samson.Modeling.DynamicalModel.ArticulatedBody property)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem property)
(samson.Modeling.DynamicalModel.DynamicalModel property)
(samson.Modeling.DynamicalModel.Group property)
(samson.Modeling.DynamicalModel.Node property)
(samson.Modeling.DynamicalModel.Particle property)
(samson.Modeling.DynamicalModel.ParticleSystem property)
(samson.Modeling.DynamicalModel.RigidBody property)
(samson.Modeling.DynamicalModel.RigidBodySystem property)
(samson.Modeling.DynamicalModel.Root property)
(samson.Modeling.InteractionModel.InteractionModel property)
(samson.Modeling.InteractionModel.ParticleSystem property)
(samson.Modeling.Model.Model property)
(samson.Modeling.Model.ModelNode property)
(samson.Modeling.StructuralModel.Atom property)
(samson.Modeling.StructuralModel.Backbone property)
(samson.Modeling.StructuralModel.Bond property)
(samson.Modeling.StructuralModel.Chain property)
(samson.Modeling.StructuralModel.Conformation property)
(samson.Modeling.StructuralModel.Group property)
(samson.Modeling.StructuralModel.Molecule property)
(samson.Modeling.StructuralModel.Node property)
(samson.Modeling.StructuralModel.Particle property)
(samson.Modeling.StructuralModel.Path property)
(samson.Modeling.StructuralModel.PseudoAtom property)
(samson.Modeling.StructuralModel.Residue property)
(samson.Modeling.StructuralModel.Root property)
(samson.Modeling.StructuralModel.Segment property)
(samson.Modeling.StructuralModel.SideChain property)
(samson.Modeling.StructuralModel.StructuralModel property)
(samson.Modeling.VisualModel.VisualModel property)
(samson.Simulation.Simulator.Simulator property)
(samson.Simulation.Simulator.SimulatorParticleSystem property)
(samson.Simulation.StateUpdater.StateUpdater property)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem property)
Visualization (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
VisualModel (class in samson.Modeling.VisualModel)
(samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
VisualModel.NodeType (class in samson.Modeling.VisualModel)
visualModelClassName (samson.DataModel.Visualization.VisualPreset property)
visualModelElementUUID (samson.DataModel.Visualization.VisualPreset property)
VisualModelFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
VisualModelMesh (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Animation attribute)
(samson.DataModel.Document.Animation.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.DataModel.Document.Presentation attribute)
(samson.DataModel.Document.Presentation.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
VisualPreset (class in samson.DataModel.Visualization)
VisualPresetGroup (class in samson.DataModel.Visualization)
volt (class in samson.DataModel.Quantity)
voltage (class in samson.DataModel.Quantity)
volume (class in samson.DataModel.Quantity)
volume() (samson.DataModel.Type.intervalVector3 method)
W
W (class in samson.DataModel.Quantity)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
waterFlag (samson.Modeling.StructuralModel.Atom property)
watt (class in samson.DataModel.Quantity)
Wb (class in samson.DataModel.Quantity)
weber (class in samson.DataModel.Quantity)
white (samson.DataModel.Type.Color attribute)
WimleyWhite1996 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
X
x (samson.DataModel.Type.intervalVector3 property)
(samson.DataModel.Type.vector3 property)
XAA (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Xe (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Xenon (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
XLE (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Y
y (samson.DataModel.Type.intervalVector3 property)
(samson.DataModel.Type.vector3 property)
Y (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
yA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Yb (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ycd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
yellow (samson.DataModel.Type.Color attribute)
yg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsDalton property)
(samson.DataModel.Quantity.unitsSI property)
ygPmPerFs (class in samson.DataModel.Quantity)
ygSquarePm (class in samson.DataModel.Quantity)
yK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
ym (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
ymol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
yoctoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
yoctocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
yoctogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU property)
(samson.DataModel.Quantity.unitsDalton property)
(samson.DataModel.Quantity.unitsSI property)
yoctogramPicometerPerFemtosecond (class in samson.DataModel.Quantity)
yoctogramSquarePicometer (class in samson.DataModel.Quantity)
yoctokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
yoctometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
yoctomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
yoctosecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
ys (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Ytterbium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Yttrium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Z
z (samson.DataModel.Type.intervalVector3 property)
(samson.DataModel.Type.vector3 property)
zA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
zC (class in samson.DataModel.Quantity)
zcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
zeptoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
zeptocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
zeptocoulomb (class in samson.DataModel.Quantity)
zeptogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
zeptojoule (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsSI property)
zeptokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
zeptometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
zeptomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
zeptosecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
zero (samson.DataModel.Type.spatialTransform attribute)
zg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
ZhaoLondon2006 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
Zinc (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Zirconium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
zJ (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsElectronvolt property)
(samson.DataModel.Quantity.unitsSI property)
zK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
zm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
zmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
Zn (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
zoomIn() (samson.DataModel.Document.Camera method)
zoomOut() (samson.DataModel.Document.Camera method)
zoomTo() (samson.DataModel.Document.Camera method)
Zr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
zs (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI property)
С
сolorSchemeClassName (samson.DataModel.Visualization.VisualPreset property)
сolorSchemeElementUUID (samson.DataModel.Visualization.VisualPreset property)