Segment attributes#
Segment attributes are defined in the segment attribute space (short name: s), that matches only segment nodes.
Attributes inherited from the node attribute space:
| Attribute name | Short name | Possible values | Examples |
|---|---|---|---|
| hasMaterial | hm |
true, false |
s.hmnot s.hm |
| hidden | h |
true, false |
s.hnot s.h |
| name | n |
strings in quotes | s.n "A"s.n "L*" |
| ownsMaterial | om |
true, false |
s.om |
| selected | true, false |
s.selectednot s.selected |
|
| selectionFlag | sf |
true, false |
s.sf falses.sf |
| visibilityFlag | vf |
true, false |
s.vf falses.vf |
| visible | v |
true, false |
s.vnot s.v |
Attributes inherited from the structuralGroup attribute space:
| Attribute name | Short name | Possible values | Examples |
|---|---|---|---|
| formalCharge | fc |
integers | s.fc > 1s.fc 6:8 |
| numberOfAtoms | nat |
integers | s.nat < 1000s.nat 100:200 |
| numberOfCarbons | nC |
integers | s.nC < 10s.nC 10:20 |
| numberOfHydrogens | nH |
integers | s.nH < 10s.nH 10:20 |
| numberOfNitrogens | nN |
integers | s.nN < 10s.nN 10:20 |
| numberOfOxygens | nO |
integers | s.nO < 10s.nO 10:20 |
| numberOfSulfurs | nS |
integers | s.nS < 10s.nS 10:20 |
| numberOfCoarseGrainedAtoms | ncga |
integers | s.ncga < 1000s.ncga 100:200 |
| partialCharge | pc |
real | s.pc > 1.5s.pc 1.5:2.0 |
Attributes specific to the segment attribute space:
| Attribute name | Short name | Possible values | Examples |
|---|---|---|---|
| numberOfResidues | nr |
integers | s.nr > 130s.nr 100:130 |
| numberOfStructuralGroups | nsg |
integers | s.nsg > 10s.nsg 10:13 |
formalCharge#
Inherited from structuralGroup.formalCharge.
hasMaterial#
Inherited from node.hasMaterial.
hidden#
Inherited from node.hidden.
name#
Inherited from node.name.
numberOfAtoms#
Inherited from structuralGroup.numberOfAtoms.
numberOfCarbons#
Inherited from structuralGroup.numberOfCarbons.
numberOfCoarseGrainedAtoms#
Inherited from structuralGroup.numberOfCoarseGrainedAtoms.
numberOfHydrogens#
Inherited from structuralGroup.numberOfHydrogens.
numberOfNitrogens#
Inherited from structuralGroup.numberOfNitrogens.
numberOfOxygens#
Inherited from structuralGroup.numberOfOxygens.
numberOfResidues#
The segment.numberOfResidues attribute (short name: s.nr) matches segments with specific number of residues.
Possible values: integers.
Examples:
segment.numberOfResidues > 100(short version:s.nr > 100): matches segments with the number of residues greater than 100segment.numberOfResidues 100:120(short version:s.nr 100:120): matches segments with the number of residues between 100 and 120
numberOfStructuralGroups#
The segment.numberOfStructuralGroups attribute (short name: s.nsg) matches segments with specific number of structural groups.
Possible values: integers.
Examples:
segment.numberOfStructuralGroups > 10(short version:s.nsg > 10): matches segments with the number of structural groups greater than 10segment.numberOfStructuralGroups 10:12(short version:s.nsg 10:12): matches segments with the number of structural groups between 10 and 12
numberOfSulfurs#
Inherited from structuralGroup.numberOfSulfurs.
ownsMaterial#
Inherited from node.ownsMaterial.
partialCharge#
Inherited from structuralGroup.partialCharge.
selected#
Inherited from node.selected, but without the short name s.
selectionFlag#
Inherited from node.selectionFlag.
visibilityFlag#
Inherited from node.visibilityFlag.
visible#
Inherited from node.visible.