Segment attributes#
Segment attributes are defined in the segment attribute space (short name: s), that matches only segment nodes.
Attributes inherited from the node attribute space:
| Attribute name | Short name | Possible values | Examples | 
|---|---|---|---|
| hasMaterial | hm | true,false | s.hmnot s.hm | 
| hidden | h | true,false | s.hnot s.h | 
| name | n | strings in quotes | s.n "A"s.n "L*" | 
| ownsMaterial | om | true,false | s.om | 
| selected | true,false | s.selectednot s.selected | |
| selectionFlag | sf | true,false | s.sf falses.sf | 
| visibilityFlag | vf | true,false | s.vf falses.vf | 
| visible | v | true,false | s.vnot s.v | 
Attributes inherited from the structuralGroup attribute space:
| Attribute name | Short name | Possible values | Examples | 
|---|---|---|---|
| formalCharge | fc | integers | s.fc > 1s.fc 6:8 | 
| numberOfAtoms | nat | integers | s.nat < 1000s.nat 100:200 | 
| numberOfCarbons | nC | integers | s.nC < 10s.nC 10:20 | 
| numberOfHydrogens | nH | integers | s.nH < 10s.nH 10:20 | 
| numberOfNitrogens | nN | integers | s.nN < 10s.nN 10:20 | 
| numberOfOxygens | nO | integers | s.nO < 10s.nO 10:20 | 
| numberOfSulfurs | nS | integers | s.nS < 10s.nS 10:20 | 
| numberOfCoarseGrainedAtoms | ncga | integers | s.ncga < 1000s.ncga 100:200 | 
| partialCharge | pc | floats | s.pc > 1.5s.pc 1.5:2.0 | 
Attributes specific to the segment attribute space:
| Attribute name | Short name | Possible values | Examples | 
|---|---|---|---|
| numberOfResidues | nr | integers | s.nr > 130s.nr 100:130 | 
| numberOfStructuralGroups | nsg | integers | s.nsg > 10s.nsg 10:13 | 
formalCharge#
Inherited from structuralGroup.formalCharge.
hasMaterial#
Inherited from node.hasMaterial.
hidden#
Inherited from node.hidden.
name#
Inherited from node.name.
numberOfAtoms#
Inherited from structuralGroup.numberOfAtoms.
numberOfCarbons#
Inherited from structuralGroup.numberOfCarbons.
numberOfCoarseGrainedAtoms#
Inherited from structuralGroup.numberOfCoarseGrainedAtoms.
numberOfHydrogens#
Inherited from structuralGroup.numberOfHydrogens.
numberOfNitrogens#
Inherited from structuralGroup.numberOfNitrogens.
numberOfOxygens#
Inherited from structuralGroup.numberOfOxygens.
numberOfResidues#
The segment.numberOfResidues attribute (short name: s.nr) matches segments with specific number of residues.
Possible values: integers.
Examples:
- segment.numberOfResidues > 100(short version:- s.nr > 100): matches segments with the number of residues greater than 100
- segment.numberOfResidues 100:120(short version:- s.nr 100:120): matches segments with the number of residues between 100 and 120
numberOfStructuralGroups#
The segment.numberOfStructuralGroups attribute (short name: s.nsg) matches segments with specific number of structural groups.
Possible values: integers.
Examples:
- segment.numberOfStructuralGroups > 10(short version:- s.nsg > 10): matches segments with the number of structural groups greater than 10
- segment.numberOfStructuralGroups 10:12(short version:- s.nsg 10:12): matches segments with the number of structural groups between 10 and 12
numberOfSulfurs#
Inherited from structuralGroup.numberOfSulfurs.
ownsMaterial#
Inherited from node.ownsMaterial.
partialCharge#
Inherited from structuralGroup.partialCharge.
selected#
Inherited from node.selected, but without the short name s.
selectionFlag#
Inherited from node.selectionFlag.
visibilityFlag#
Inherited from node.visibilityFlag.
visible#
Inherited from node.visible.