SAMSON Python Scripting
0.12.2
Table of Contents
Facade Library Group
DataModel Library Group
Modeling Library Group
Simulation Library Group
GUI Library Group
Core Library Group
Changelog
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SAMSON Python Scripting
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Index
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
_
__add__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__eq__ (samson.DataModel.Type.matrix66 attribute)
__eq__() (samson.Core.Container.UUID method)
(samson.Core.Container.VersionNumber method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.spatialDomain method)
(samson.DataModel.Type.spatialTransform method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__ge__ (samson.DataModel.Type.interval attribute)
(samson.DataModel.Type.intervalVector3 attribute)
(samson.DataModel.Type.matrix33 attribute)
(samson.DataModel.Type.matrix66 attribute)
(samson.DataModel.Type.spatialDomain attribute)
(samson.DataModel.Type.spatialTransform attribute)
__ge__() (samson.Core.Container.VersionNumber method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__gt__ (samson.DataModel.Type.interval attribute)
(samson.DataModel.Type.intervalVector3 attribute)
(samson.DataModel.Type.matrix33 attribute)
(samson.DataModel.Type.matrix66 attribute)
(samson.DataModel.Type.spatialDomain attribute)
(samson.DataModel.Type.spatialTransform attribute)
__gt__() (samson.Core.Container.VersionNumber method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__iadd__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__imul__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__isub__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__itruediv__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__le__ (samson.DataModel.Type.interval attribute)
(samson.DataModel.Type.intervalVector3 attribute)
(samson.DataModel.Type.matrix33 attribute)
(samson.DataModel.Type.matrix66 attribute)
(samson.DataModel.Type.spatialDomain attribute)
(samson.DataModel.Type.spatialTransform attribute)
__le__() (samson.Core.Container.VersionNumber method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__lt__ (samson.DataModel.Type.interval attribute)
(samson.DataModel.Type.intervalVector3 attribute)
(samson.DataModel.Type.matrix33 attribute)
(samson.DataModel.Type.matrix66 attribute)
(samson.DataModel.Type.spatialDomain attribute)
(samson.DataModel.Type.spatialTransform attribute)
__lt__() (samson.Core.Container.UUID method)
(samson.Core.Container.VersionNumber method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__mul__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialTransform method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__ne__ (samson.DataModel.Type.matrix66 attribute)
__ne__() (samson.Core.Container.UUID method)
(samson.Core.Container.VersionNumber method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.spatialDomain method)
(samson.DataModel.Type.spatialTransform method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__neg__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__radd__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
__rmul__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__rsub__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
__rtruediv__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
__sub__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
__truediv__() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
A
A (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
a0 (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
aA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Ac (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
acceleration (class in samson.DataModel.Quantity)
acceleration3 (class in samson.DataModel.Type)
acceleration6 (class in samson.DataModel.Type)
accelerationInterval (class in samson.DataModel.Type)
accelerationInterval3 (class in samson.DataModel.Type)
acd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
AcidicPolar (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainPolarity attribute)
acos() (in module samson.DataModel.Quantity)
Actinide (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
Actinium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Action (class in samson.GUI.Action)
activityFlag (samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
add() (samson.Modeling.StructuralModel.Path method)
addChild() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
addGroupNodesToSelection() (samson.DataModel.Document.Document method)
addHydrogens() (samson.Modeling.StructuralModel.Atom method)
addHydrogensByResidueType() (samson.Modeling.StructuralModel.Residue method)
addNode() (samson.DataModel.DataGraph.NodeIndexer method)
addNodeToSelection() (samson.DataModel.Document.Document method)
addParticle() (samson.Modeling.DynamicalModel.ParticleSystem method)
addStructuralParticle() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
ag (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Ag (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
aK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Al (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ALA (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
alignWithAxis() (samson.DataModel.Document.Camera method)
alignWithPlane() (samson.DataModel.Document.Camera method)
AlkaliMetal (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
AlkalineEarthMetal (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
alpha (samson.DataModel.Type.Color attribute)
Alpha (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SecondaryStructureType attribute)
alternateLocation (samson.Modeling.StructuralModel.Atom attribute)
Aluminium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
am (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Am (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Americium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Amide (samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
aminoAcidOneLetterCode (samson.Modeling.StructuralModel.Residue attribute)
amol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
amountOfSubstance (class in samson.DataModel.Quantity)
ampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
angstrom (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
angularAcceleration (class in samson.DataModel.Quantity)
angularAcceleration3 (class in samson.DataModel.Type)
angularVelocity (class in samson.DataModel.Quantity)
angularVelocity3 (class in samson.DataModel.Type)
animationFlag (samson.Modeling.StructuralModel.Path attribute)
animationType (samson.Modeling.StructuralModel.Path attribute)
anisotropicTFactors (samson.Modeling.StructuralModel.Atom attribute)
Antimony (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
App (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
Ar (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
area (class in samson.DataModel.Quantity)
area() (samson.DataModel.Type.intervalVector3 method)
ARG (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Argon (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Aromatic (samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
aromaticity (samson.Modeling.StructuralModel.Atom attribute)
Arsenic (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ArticulatedBody (class in samson.Modeling.DynamicalModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
ArticulatedBody.NodeType (class in samson.Modeling.DynamicalModel)
ArticulatedBodySystem (class in samson.Modeling.DynamicalModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
ArticulatedBodySystem.NodeType (class in samson.Modeling.DynamicalModel)
as (samson.DataModel.Quantity.unitsSI attribute)
As (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
asin() (in module samson.DataModel.Quantity)
askUser() (in module samson.Facade.SAMSON)
ASN (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
ASP (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
aspectRatio (samson.DataModel.Document.Camera attribute)
Assembly (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Asset (class in samson.DataModel.Asset)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Asset.NodeType (class in samson.DataModel.Asset)
assetFileName (samson.DataModel.Asset.Asset attribute)
Astatine (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ASX (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
At (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
atan() (in module samson.DataModel.Quantity)
Atom (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Atom.Geometry (class in samson.Modeling.StructuralModel)
Atom.Hybridization (class in samson.Modeling.StructuralModel)
Atom.NodeType (class in samson.Modeling.StructuralModel)
atomicWeight (samson.Modeling.Element.Element attribute)
(samson.Modeling.StructuralModel.Atom attribute)
attoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
attocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
attogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
attokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
attometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
attomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
attosecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Au (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
auAction (class in samson.DataModel.Quantity)
auCharge (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
auCoulombConstant (class in samson.DataModel.Quantity)
auMass (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsDalton attribute)
(samson.DataModel.Quantity.unitsSI attribute)
auTime (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
avogadroConstant (samson.DataModel.Type.constant attribute)
ax (samson.DataModel.Type.vector6 attribute)
ay (samson.DataModel.Type.vector6 attribute)
az (samson.DataModel.Type.vector6 attribute)
B
B (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Ba (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Backbone (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Backbone.NodeType (class in samson.Modeling.StructuralModel)
backView() (samson.DataModel.Document.Camera method)
Barium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Base (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
BasicPolar (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainPolarity attribute)
basisX (samson.DataModel.Document.Camera attribute)
basisY (samson.DataModel.Document.Camera attribute)
basisZ (samson.DataModel.Document.Camera attribute)
Be (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
becquerel (class in samson.DataModel.Quantity)
beginHolding() (in module samson.Facade.SAMSON)
Bent (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Berkelium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Beryllium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Beta (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SecondaryStructureType attribute)
Bh (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Bi (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
BicappedTrigonalPrismatic (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Biology (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Bismuth (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Bk (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
black (samson.DataModel.Type.Color attribute)
block (samson.Modeling.Element.Element attribute)
(samson.Modeling.StructuralModel.Atom attribute)
blue (samson.DataModel.Type.Color attribute)
bohr (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Bohrium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
boltzmannConstant (samson.DataModel.Type.constant attribute)
Bond (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Bond.BondType (class in samson.Modeling.StructuralModel)
Bond.NodeType (class in samson.Modeling.StructuralModel)
bondType (samson.Modeling.StructuralModel.Bond attribute)
bondTypeString (samson.Modeling.StructuralModel.Bond attribute)
Boron (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
bottomView() (samson.DataModel.Document.Camera method)
Bounce (samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.AnimationType attribute)
bound() (samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
Bq (class in samson.DataModel.Quantity)
Br (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Bromine (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
C
C (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
c (samson.DataModel.Type.constant attribute)
C (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
cA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Ca (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Cadmium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Caesium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Calcium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Californium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Camera (class in samson.DataModel.Document)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Camera.NodeType (class in samson.DataModel.Document)
canAddChild() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
canAddChildType() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
candela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
CappedOctahedral (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
CappedSquareAntiprismatic (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
CappedTrigonalPrismatic (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
captureViewport() (in module samson.Facade.SAMSON)
captureViewportToFile() (in module samson.Facade.SAMSON)
Carbon (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
castToInteractionModelParticleSystem() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
castToLabel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
castToMesh() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
castToVisualModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
ccd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
cd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Cd (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Ce (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ceil() (in module samson.DataModel.Quantity)
center() (samson.DataModel.Document.Camera method)
(samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
centerTransform() (samson.Modeling.StructuralModel.StructuralModel method)
centiampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
centicandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
centigram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
centikelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
centimeter (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
centimole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
centisecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Cerium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Cf (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
cg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Chain (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Chain.NodeType (class in samson.Modeling.StructuralModel)
chainID (samson.Modeling.StructuralModel.Atom attribute)
chainIDString (samson.Modeling.StructuralModel.Atom attribute)
chainName (samson.Modeling.StructuralModel.Atom attribute)
changed() (samson.DataModel.Document.Label method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
Chemistry (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Chlorine (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
chroma (samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
chroma1 (samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
chroma2 (samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
chromaPower (samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
Chromium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
CIELabfromCIEXYZ() (samson.DataModel.Type.ColorConversion static method)
CIELabfromCylindricalCIELab() (samson.DataModel.Type.ColorConversion static method)
CIELuvfromCIEXYZ() (samson.DataModel.Type.ColorConversion static method)
CIELuvfromCylindricalCIELuv() (samson.DataModel.Type.ColorConversion static method)
CIEXYZfromCIELab() (samson.DataModel.Type.ColorConversion static method)
CIEXYZfromCIELuv() (samson.DataModel.Type.ColorConversion static method)
CIEXYZfromRGB() (samson.DataModel.Type.ColorConversion static method)
CIEXYZfromSRGB() (samson.DataModel.Type.ColorConversion static method)
cK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Cl (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Class (class in samson.Core.Class)
Class.Category (class in samson.Core.Class)
Class.Type (class in samson.Core.Class)
ClassAttribute (class in samson.Core.Class)
ClassAttribute.Type (class in samson.Core.Class)
ClassInterface (class in samson.Core.Class)
ClassProxy (class in samson.Core.Class)
clear() (samson.DataModel.DataGraph.NodeIndexer method)
clearAltLocation() (samson.Modeling.StructuralModel.Atom method)
clearAnisotropicTFactors() (samson.Modeling.StructuralModel.Atom method)
clearAromaticity() (samson.Modeling.StructuralModel.Atom method)
clearComment() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
clearConnectivityAnnotationInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearCrystallographicAndTransformationInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearCustomType() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Bond method)
clearFormalCharge() (samson.Modeling.StructuralModel.Atom method)
clearGeometry() (samson.Modeling.StructuralModel.Atom method)
clearHeterogenInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearHybridization() (samson.Modeling.StructuralModel.Atom method)
clearInsertionCode() (samson.Modeling.StructuralModel.Atom method)
clearMiscellaneousInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearName() (samson.Modeling.StructuralModel.Atom method)
clearOccupancy() (samson.Modeling.StructuralModel.Atom method)
clearOxidationState() (samson.Modeling.StructuralModel.Atom method)
clearPartialCharge() (samson.Modeling.StructuralModel.Atom method)
clearPrimaryStructureInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearRecordType() (samson.Modeling.StructuralModel.Atom method)
clearResonance() (samson.Modeling.StructuralModel.Atom method)
clearSecondaryStructureInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearSelection() (samson.DataModel.Document.Document method)
clearSerialNumber() (samson.Modeling.StructuralModel.Atom method)
clearStatusBit() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
clearStructuralID() (samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
clearSYBYLType() (samson.Modeling.StructuralModel.Atom method)
clearTemperatureFactor() (samson.Modeling.StructuralModel.Atom method)
clearTitleInformation() (samson.Modeling.StructuralModel.StructuralModel method)
clearWaterFlag() (samson.Modeling.StructuralModel.Atom method)
clippingPlane (samson.DataModel.Document.Camera attribute)
clone() (samson.DataModel.Asset.Asset method)
(samson.DataModel.Color.ColorPalette method)
(samson.DataModel.Color.ColorPaletteDiverging method)
(samson.DataModel.Color.ColorPaletteDivergingHCL method)
(samson.DataModel.Color.ColorPaletteQualitative method)
(samson.DataModel.Color.ColorPaletteQualitativeHCL method)
(samson.DataModel.Color.ColorPaletteSequential method)
(samson.DataModel.Color.ColorPaletteSequentialHCL method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
cm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Cm (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
cmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Cn (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Co (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Cobalt (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
collapseToLowerBound() (samson.DataModel.Type.intervalVector3 method)
collapseToUpperBound() (samson.DataModel.Type.intervalVector3 method)
Color (class in samson.DataModel.Type)
ColorConversion (class in samson.DataModel.Type)
colorCPK (samson.Modeling.Element.Element attribute)
ColorPalette (class in samson.DataModel.Color)
ColorPalette.ColorPaletteType (class in samson.DataModel.Color)
ColorPaletteDefaultPalette (class in samson.DataModel.Color)
ColorPaletteDiverging (class in samson.DataModel.Color)
ColorPaletteDiverging.ColorPaletteType (class in samson.DataModel.Color)
ColorPaletteDivergingHCL (class in samson.DataModel.Color)
ColorPaletteDivergingHCL.ColorPaletteType (class in samson.DataModel.Color)
ColorPaletteQualitative (class in samson.DataModel.Color)
ColorPaletteQualitative.ColorPaletteType (class in samson.DataModel.Color)
ColorPaletteQualitativeHCL (class in samson.DataModel.Color)
ColorPaletteQualitativeHCL.ColorPaletteType (class in samson.DataModel.Color)
ColorPaletteSequential (class in samson.DataModel.Color)
ColorPaletteSequential.ColorPaletteType (class in samson.DataModel.Color)
ColorPaletteSequentialHCL (class in samson.DataModel.Color)
ColorPaletteSequentialHCL.ColorPaletteType (class in samson.DataModel.Color)
ColorScheme (class in samson.DataModel.DataGraph)
ColorSchemeConstant (class in samson.DataModel.Color)
ColorSchemeCPK (class in samson.DataModel.Color)
ColorSchemePerAttribute_dimensionless (class in samson.DataModel.Color)
ColorSchemePerAttribute_double (class in samson.DataModel.Color)
ColorSchemePerAttribute_float (class in samson.DataModel.Color)
ColorSchemePerAttribute_int (class in samson.DataModel.Color)
ColorSchemePerChainID (class in samson.DataModel.Color)
ColorSchemePerFormalCharge (class in samson.DataModel.Color)
ColorSchemePerOccupancy (class in samson.DataModel.Color)
ColorSchemePerPartialCharge (class in samson.DataModel.Color)
ColorSchemePerResidueHydrophobicity (class in samson.DataModel.Color)
ColorSchemePerResidueSequenceNumber (class in samson.DataModel.Color)
ColorSchemePerResidueType (class in samson.DataModel.Color)
ColorSchemePerSecondaryStructureType (class in samson.DataModel.Color)
ColorSchemePerSideChainCharge (class in samson.DataModel.Color)
ColorSchemePerSideChainPolarity (class in samson.DataModel.Color)
ColorSchemePerTemperatureFactor (class in samson.DataModel.Color)
comment (samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
commentSize (samson.Modeling.StructuralModel.Atom attribute)
computeAminoAcidChi1Angle() (samson.Modeling.StructuralModel.Residue method)
computeAminoAcidChi2Angle() (samson.Modeling.StructuralModel.Residue method)
computeAminoAcidChi3Angle() (samson.Modeling.StructuralModel.Residue method)
computeAminoAcidChi4Angle() (samson.Modeling.StructuralModel.Residue method)
computeAminoAcidChi5Angle() (samson.Modeling.StructuralModel.Residue method)
computeDomain() (samson.Modeling.StructuralModel.StructuralModel static method)
computeEulerDecompositionZYZ() (samson.DataModel.Type.matrix33 method)
computePhiAngle() (samson.Modeling.StructuralModel.Residue method)
computePsiAngle() (samson.Modeling.StructuralModel.Residue method)
computeSecondaryStructure() (samson.Modeling.StructuralModel.StructuralModel method)
Conformation (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Conformation.NodeType (class in samson.Modeling.StructuralModel)
connectivityAnnotationInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
constant (class in samson.DataModel.Type)
contains() (samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
Controller (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
ControllerFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
ControllerNode (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Copernicium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Copper (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
copy() (samson.Modeling.StructuralModel.Path method)
correctDistanceWithPBC() (samson.Modeling.DynamicalModel.ParticleSystem method)
cos() (in module samson.DataModel.Quantity)
cosphi() (samson.DataModel.Type.matrix33 method)
coulomb (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
coulombConstant (samson.DataModel.Type.constant attribute)
coulombPerMeter (class in samson.DataModel.Quantity)
coulombPerSquareMeter (class in samson.DataModel.Quantity)
countNodes() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
covalentRadius (samson.Modeling.Element.Element attribute)
(samson.Modeling.StructuralModel.Atom attribute)
CPerM (class in samson.DataModel.Quantity)
CPerM2 (class in samson.DataModel.Quantity)
Cr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
create() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
createConformation() (samson.Modeling.StructuralModel.Path method)
createConformations() (samson.Modeling.StructuralModel.Path method)
createCovalentBonds() (samson.Modeling.StructuralModel.StructuralModel method)
createCovalentBondsByResidueType() (samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.StructuralModel method)
createGroup() (samson.DataModel.Document.Document method)
createStructuralModels() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
crystallographicAndTransformationInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
cs (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Cs (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Cu (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
cubicAm (class in samson.DataModel.Quantity)
cubicAngstrom (class in samson.DataModel.Quantity)
cubicAttometer (class in samson.DataModel.Quantity)
cubicCentimeter (class in samson.DataModel.Quantity)
cubicCm (class in samson.DataModel.Quantity)
cubicDam (class in samson.DataModel.Quantity)
cubicDecameter (class in samson.DataModel.Quantity)
cubicDecimeter (class in samson.DataModel.Quantity)
cubicDistance (class in samson.DataModel.Quantity)
cubicDm (class in samson.DataModel.Quantity)
cubicFemtometer (class in samson.DataModel.Quantity)
cubicFm (class in samson.DataModel.Quantity)
cubicHectometer (class in samson.DataModel.Quantity)
cubicHm (class in samson.DataModel.Quantity)
cubicKilometer (class in samson.DataModel.Quantity)
cubicKm (class in samson.DataModel.Quantity)
cubicLength (class in samson.DataModel.Quantity)
cubicM (class in samson.DataModel.Quantity)
cubicMeter (class in samson.DataModel.Quantity)
cubicMicrometer (class in samson.DataModel.Quantity)
cubicMillimeter (class in samson.DataModel.Quantity)
cubicMm (class in samson.DataModel.Quantity)
cubicNanometer (class in samson.DataModel.Quantity)
cubicNm (class in samson.DataModel.Quantity)
cubicPicometer (class in samson.DataModel.Quantity)
cubicPm (class in samson.DataModel.Quantity)
cubicUm (class in samson.DataModel.Quantity)
cubicYm (class in samson.DataModel.Quantity)
cubicYoctometer (class in samson.DataModel.Quantity)
cubicZeptometer (class in samson.DataModel.Quantity)
cubicZm (class in samson.DataModel.Quantity)
Curium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
currentEnergy (samson.Modeling.StructuralModel.Path attribute)
currentStep (samson.Modeling.StructuralModel.Path attribute)
currentTime (samson.Modeling.StructuralModel.Path attribute)
currentValence (samson.Modeling.StructuralModel.Atom attribute)
Custom (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Color.ColorPalette attribute)
(samson.DataModel.Color.ColorPalette.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDiverging.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitative.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequential.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL.ColorPaletteType attribute)
customType (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Bond attribute)
cyan (samson.DataModel.Type.Color attribute)
CylindricalCIELabfromCIELab() (samson.DataModel.Type.ColorConversion static method)
CylindricalCIELabfromSRGB() (samson.DataModel.Type.ColorConversion static method)
CylindricalCIELuvfromCIELuv() (samson.DataModel.Type.ColorConversion static method)
CylindricalCIELuvfromSRGB() (samson.DataModel.Type.ColorConversion static method)
CYS (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
D
Da (class in samson.DataModel.Quantity)
dA (class in samson.DataModel.Quantity)
Da (samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsDalton attribute)
(samson.DataModel.Quantity.unitsSI attribute)
dA (samson.DataModel.Quantity.unitsSI attribute)
DA (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
daA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
dacd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
dag (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
daK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
dalton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsDalton attribute)
(samson.DataModel.Quantity.unitsSI attribute)
dam (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
damol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Darmstadtium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
DataGraphNodeGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Db (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
DC (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
dcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
decaampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
decacandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
decagram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
decakelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
decameter (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
decamole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
deciampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
decicandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
decigram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
decikelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
decimeter (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
decimole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
decisecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
defaultView() (samson.DataModel.Document.Camera method)
deg (class in samson.DataModel.Quantity)
degPerS (class in samson.DataModel.Quantity)
degree (class in samson.DataModel.Quantity)
degreePerSecond (class in samson.DataModel.Quantity)
DegToRad (samson.DataModel.Type.constant attribute)
description (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassProxy attribute)
det() (samson.DataModel.Type.matrix33 method)
Developer (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
dg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
DG (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
DI (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
diagonalize() (samson.DataModel.Type.matrix33 method)
diameter() (samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
dimensionless (class in samson.DataModel.Quantity)
dimensionless3 (class in samson.DataModel.Type)
dimensionless33 (class in samson.DataModel.Type)
dimensionless6 (class in samson.DataModel.Type)
dimensionless66 (class in samson.DataModel.Type)
dimensionlessInterval (class in samson.DataModel.Type)
dimensionlessInterval3 (class in samson.DataModel.Type)
disableHolding() (in module samson.Facade.SAMSON)
dissociationConstant1 (samson.Modeling.StructuralModel.Residue attribute)
dissociationConstant2 (samson.Modeling.StructuralModel.Residue attribute)
distance (class in samson.DataModel.Quantity)
distance2ToPoint() (samson.DataModel.Type.intervalVector3 method)
Diverging (samson.DataModel.Color.ColorPalette attribute)
(samson.DataModel.Color.ColorPalette.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDiverging.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitative.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequential.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL.ColorPaletteType attribute)
divergingHCLBerlin (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
divergingHCLBlue2Red (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
divergingHCLBlue2Red2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
divergingHCLBlue2Red3 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
dK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
dm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
dmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Document (class in samson.DataModel.Document)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Document.NodeType (class in samson.DataModel.Document)
DocumentManager (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Dodecahedral (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Double (samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
doubleSymmetricPart() (samson.DataModel.Type.matrix66 method)
drawOnTop (samson.DataModel.Document.Label attribute)
drawOutline (samson.DataModel.Document.Label attribute)
ds (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Ds (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
DT (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Dubnium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Dummy (samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
Dy (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
DynamicalGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModel (class in samson.Modeling.DynamicalModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModel.NodeType (class in samson.Modeling.DynamicalModel)
DynamicalModelArticulatedBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelNode (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelNodeArticulatedBody (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelNodeGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelNodeParticle (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelNodeRigidBody (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelNodeRoot (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelParticleSystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalModelParticleSystemFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
DynamicalModelRigidBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
dynamicalModelType (samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
DynamicalNode (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalParticle (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
DynamicalRoot (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Dysprosium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
E
e (class in samson.DataModel.Quantity)
ec (class in samson.DataModel.Quantity)
Editor (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
Education (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Eh (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsKilocaloriePerMole attribute)
(samson.DataModel.Quantity.unitsSI attribute)
Einsteinium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
electricCharge (class in samson.DataModel.Quantity)
electricField (class in samson.DataModel.Quantity)
electronCharge (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
electronDensity (class in samson.DataModel.Quantity)
electronegativity (samson.Modeling.Element.Element attribute)
(samson.Modeling.StructuralModel.Atom attribute)
Electronics (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
electronMass (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsDalton attribute)
(samson.DataModel.Quantity.unitsSI attribute)
electronvolt (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsKilocaloriePerMole attribute)
(samson.DataModel.Quantity.unitsSI attribute)
Element (class in samson.Modeling.Element)
element (samson.Core.Class.ClassProxy attribute)
Element.ElementType (class in samson.Modeling.Element)
Element.MetalSubcategory (class in samson.Modeling.Element)
elementName (samson.Modeling.StructuralModel.Atom attribute)
elementSymbol (samson.Modeling.StructuralModel.Atom attribute)
ElementTable (class in samson.Modeling.Element)
elementType (samson.Modeling.StructuralModel.Atom attribute)
elementUUID (samson.Core.Class.ClassProxy attribute)
enableHolding() (in module samson.Facade.SAMSON)
endHolding() (in module samson.Facade.SAMSON)
energy (class in samson.DataModel.Quantity)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
energy3 (class in samson.DataModel.Type)
energyInterval (class in samson.DataModel.Type)
energyPerSquareLength (class in samson.DataModel.Quantity)
enforcePeriodicBoundaryConditions() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
Er (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
erase() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
Erbium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Es (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Eu (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Europium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
eV (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsKilocaloriePerMole attribute)
(samson.DataModel.Quantity.unitsSI attribute)
exit() (in module samson.Facade.SAMSON)
exp() (in module samson.DataModel.Quantity)
expand() (samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
expectedValence (samson.Modeling.StructuralModel.Atom attribute)
Exporter (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
exportToFile() (in module samson.Facade.SAMSON)
F
F (class in samson.DataModel.Quantity)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
fA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
fabs() (in module samson.DataModel.Quantity)
Factory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
farad (class in samson.DataModel.Quantity)
farPlane (samson.DataModel.Document.Camera attribute)
favoriteFlag (samson.GUI.Action.Action attribute)
fcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Fe (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
femtoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
femtocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
femtogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
femtokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
femtometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
femtomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
femtosecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsSI attribute)
fermi (class in samson.DataModel.Quantity)
Fermium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
fg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
fieldOfViewAngleY (samson.DataModel.Document.Camera attribute)
fileName (samson.DataModel.Document.Document attribute)
fit() (samson.DataModel.Type.intervalVector3 method)
fK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Fl (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Flerovium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
floor() (in module samson.DataModel.Quantity)
Fluorine (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
flushForceBuffer() (samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
flushMomentumBuffer() (samson.Modeling.DynamicalModel.ParticleSystem method)
flushPositionBuffer() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
fm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Fm (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
fmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Folder (class in samson.DataModel.Document)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Folder.NodeType (class in samson.DataModel.Document)
force (class in samson.DataModel.Quantity)
force3 (class in samson.DataModel.Type)
force6 (class in samson.DataModel.Type)
forceInterval (class in samson.DataModel.Type)
forceInterval3 (class in samson.DataModel.Type)
forcePerLength (class in samson.DataModel.Quantity)
formalCharge (samson.Modeling.StructuralModel.Atom attribute)
forwardFlag (samson.Modeling.StructuralModel.Path attribute)
Fr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Francium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
fromAlignment() (samson.DataModel.Type.matrix33 static method)
fromAxisAngle() (samson.DataModel.Type.matrix33 static method)
fromAxisAnglePi() (samson.DataModel.Type.matrix33 static method)
fromHCL() (samson.DataModel.Type.Color static method)
(samson.DataModel.Type.ColorConversion static method)
fromHSV() (samson.DataModel.Type.Color static method)
(samson.DataModel.Type.ColorConversion static method)
fromLinearInterpolation() (samson.DataModel.Quantity.unitsAU static method)
(samson.DataModel.Quantity.unitsDalton static method)
(samson.DataModel.Quantity.unitsElectronvolt static method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole static method)
(samson.DataModel.Quantity.unitsSI static method)
fromQuaternion() (samson.DataModel.Type.matrix33 static method)
frontView() (samson.DataModel.Document.Camera method)
fs (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsSI attribute)
G
g (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsDalton attribute)
(samson.DataModel.Quantity.unitsSI attribute)
G (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Ga (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Gadolinium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Gallium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Gd (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
GDa (class in samson.DataModel.Quantity)
gDa (samson.DataModel.Quantity.unitsDalton attribute)
Ge (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
General (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
geometry (samson.Modeling.StructuralModel.Atom attribute)
geometryString (samson.Modeling.StructuralModel.Atom attribute)
Germanium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
getAbsLower() (samson.DataModel.Type.interval method)
getAbsUpper() (samson.DataModel.Type.interval method)
getAction() (in module samson.Facade.SAMSON)
getActiveCamera() (in module samson.Facade.SAMSON)
(samson.DataModel.Document.Document method)
getActiveDocument() (in module samson.Facade.SAMSON)
getActiveStructuralModel() (in module samson.Facade.SAMSON)
(samson.DataModel.Document.Document method)
getActivityFlag() (samson.Modeling.DynamicalModel.ParticleSystem method)
getAlphaCarbon() (samson.Modeling.StructuralModel.Backbone method)
getAminoAcidOneLetterCode() (samson.Modeling.StructuralModel.Residue static method)
getAssetList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getAtom() (in module samson.Facade.SAMSON)
getAtomicWeight() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getAtomRadius() (in module samson.Facade.SAMSON)
getAttribute() (samson.Core.Class.ClassInterface method)
getBackbone() (samson.Modeling.StructuralModel.Residue method)
getBetaCarbon() (samson.Modeling.StructuralModel.SideChain method)
getBlock() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getBond() (in module samson.Facade.SAMSON)
getBondedAtoms() (samson.Modeling.StructuralModel.Atom method)
getBondList() (samson.Modeling.StructuralModel.Atom method)
getBondRadius() (in module samson.Facade.SAMSON)
getBondTo() (samson.Modeling.StructuralModel.Atom method)
getCameraList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getCarbon() (samson.Modeling.StructuralModel.Backbone method)
getChain() (samson.Modeling.StructuralModel.Atom method)
getChangedForceIndex() (samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
getChangedMomentumIndex() (samson.Modeling.DynamicalModel.ParticleSystem method)
getChangedPositionIndex() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
getChildren() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
getClassCategoryString() (samson.Core.Class.Class method)
getClassTypeString() (samson.Core.Class.Class method)
getColor() (samson.DataModel.Color.ColorPalette method)
(samson.DataModel.Color.ColorPaletteDiverging method)
(samson.DataModel.Color.ColorPaletteDivergingHCL method)
(samson.DataModel.Color.ColorPaletteQualitative method)
(samson.DataModel.Color.ColorPaletteQualitativeHCL method)
(samson.DataModel.Color.ColorPaletteSequential method)
(samson.DataModel.Color.ColorPaletteSequentialHCL method)
(samson.DataModel.Color.ColorSchemeCPK method)
(samson.DataModel.Color.ColorSchemeConstant method)
(samson.DataModel.Color.ColorSchemePerAttribute_dimensionless method)
(samson.DataModel.Color.ColorSchemePerAttribute_double method)
(samson.DataModel.Color.ColorSchemePerAttribute_float method)
(samson.DataModel.Color.ColorSchemePerAttribute_int method)
(samson.DataModel.Color.ColorSchemePerChainID method)
(samson.DataModel.Color.ColorSchemePerFormalCharge method)
(samson.DataModel.Color.ColorSchemePerOccupancy method)
(samson.DataModel.Color.ColorSchemePerPartialCharge method)
(samson.DataModel.Color.ColorSchemePerResidueHydrophobicity method)
(samson.DataModel.Color.ColorSchemePerResidueSequenceNumber method)
(samson.DataModel.Color.ColorSchemePerResidueType method)
(samson.DataModel.Color.ColorSchemePerSecondaryStructureType method)
(samson.DataModel.Color.ColorSchemePerSideChainCharge method)
(samson.DataModel.Color.ColorSchemePerSideChainPolarity method)
(samson.DataModel.Color.ColorSchemePerTemperatureFactor method)
(samson.DataModel.DataGraph.ColorScheme method)
(samson.DataModel.Type.Color method)
getColorFromUser() (in module samson.Facade.SAMSON)
getColorInPaletteColorSpace() (samson.DataModel.Color.ColorPalette method)
(samson.DataModel.Color.ColorPaletteDiverging method)
(samson.DataModel.Color.ColorPaletteDivergingHCL method)
(samson.DataModel.Color.ColorPaletteQualitative method)
(samson.DataModel.Color.ColorPaletteQualitativeHCL method)
(samson.DataModel.Color.ColorPaletteSequential method)
(samson.DataModel.Color.ColorPaletteSequentialHCL method)
getColorPaletteFromUser() (in module samson.Facade.SAMSON)
getColorScheme() (samson.DataModel.DataGraph.Material method)
getColumn() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
getComment() (samson.Modeling.StructuralModel.Atom method)
getConformationList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getConnectedComponent() (samson.Modeling.StructuralModel.Atom method)
getControllerList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getCovalentRadius() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getCurrentSelectionFilter() (in module samson.Facade.SAMSON)
getDeepSelectionFlag() (in module samson.Facade.SAMSON)
getDefaultColorPalette() (samson.DataModel.Color.ColorSchemePerChainID static method)
(samson.DataModel.Color.ColorSchemePerFormalCharge static method)
(samson.DataModel.Color.ColorSchemePerOccupancy static method)
(samson.DataModel.Color.ColorSchemePerPartialCharge static method)
(samson.DataModel.Color.ColorSchemePerResidueHydrophobicity static method)
(samson.DataModel.Color.ColorSchemePerResidueSequenceNumber static method)
(samson.DataModel.Color.ColorSchemePerResidueType static method)
(samson.DataModel.Color.ColorSchemePerSecondaryStructureType static method)
(samson.DataModel.Color.ColorSchemePerSideChainCharge static method)
(samson.DataModel.Color.ColorSchemePerSideChainPolarity static method)
(samson.DataModel.Color.ColorSchemePerTemperatureFactor static method)
getDegreesFromRadians() (samson.DataModel.Type.constant static method)
getDeltaAtom() (samson.Modeling.StructuralModel.SideChain method)
getDissociationConstant1() (samson.Modeling.StructuralModel.Residue static method)
getDissociationConstant2() (samson.Modeling.StructuralModel.Residue static method)
getDocument() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getDoubleFromUser() (in module samson.Facade.SAMSON)
getDynamicalModel() (samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getDynamicalModelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getDynamicalRoot() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
getE1() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialTransform method)
getE2() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialTransform method)
getE3() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialTransform method)
getE4() (samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialTransform method)
getE5() (samson.DataModel.Type.matrix66 method)
getE6() (samson.DataModel.Type.matrix66 method)
getElectronegativity() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getElement() (samson.Modeling.Element.ElementTable static method)
getElementFromUser() (in module samson.Facade.SAMSON)
getElementName() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getElementSymbol() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getElementTypeByName() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getElementTypeBySymbol() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getEnergy() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getEnergyData() (samson.Modeling.StructuralModel.Path method)
getEpsilonAtom() (samson.Modeling.StructuralModel.SideChain method)
getEtaAtom() (samson.Modeling.StructuralModel.SideChain method)
getEyeDestination() (samson.DataModel.Document.Camera method)
getEyePosition() (samson.DataModel.Document.Camera method)
getEyeVelocity() (samson.DataModel.Document.Camera method)
getFileNameFromUser() (in module samson.Facade.SAMSON)
getFlags() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getFolderList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getForce() (samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getForceChanged() (samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
getForceData() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getFrustumPositionFromWorldPosition() (samson.DataModel.Document.Camera method)
getGammaAtom() (samson.Modeling.StructuralModel.SideChain method)
getGeometryString() (samson.Modeling.StructuralModel.Atom static method)
getGroup() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getGroupNodes() (samson.DataModel.DataGraph.Group method)
getHeadPosition() (samson.DataModel.Document.Camera method)
getHierarchyString() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getHybridizationString() (samson.Modeling.StructuralModel.Atom static method)
getHydrogens() (samson.Modeling.StructuralModel.Atom method)
getHydrophobicity() (samson.Modeling.StructuralModel.Residue method)
getHydrophobicityForResidueType() (samson.Modeling.StructuralModel.Residue static method)
getHydrophobicityScaleString() (samson.Modeling.StructuralModel.Residue static method)
getIndex() (samson.DataModel.DataGraph.NodeIndexer method)
getInheritedFlags() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getIntegerFromUser() (in module samson.Facade.SAMSON)
getInteractionModel() (samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getInteractionModelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getInterface() (samson.Core.Class.ClassProxy method)
getInverseMass() (samson.Modeling.DynamicalModel.ParticleSystem method)
getIsoelectricPointPH() (samson.Modeling.StructuralModel.Residue static method)
getItemFromUser() (in module samson.Facade.SAMSON)
getLabelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getMass() (samson.Modeling.DynamicalModel.ParticleSystem method)
getMaterial() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getMaterialOwner() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getMemoryFootprint() (samson.Core.Reference.ReferenceTarget method)
(samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Material method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Grid method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.NeighborSearch.NeighborSearch method)
(samson.Simulation.NeighborSearch.ParticleSystem method)
(samson.Simulation.NeighborSearch.ParticleSystemGrid method)
(samson.Simulation.NeighborSearch.ParticleSystemGridPBC method)
(samson.Simulation.NeighborSearch.ParticleSystemPBC method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getModel() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
getModelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getMolecule() (samson.Modeling.StructuralModel.Atom method)
getMomentum() (samson.Modeling.DynamicalModel.ParticleSystem method)
getMousePositionInViewport() (in module samson.Facade.SAMSON)
getNeighborIndexer() (samson.Modeling.StructuralModel.Grid method)
(samson.Simulation.NeighborSearch.ParticleSystem method)
(samson.Simulation.NeighborSearch.ParticleSystemGrid method)
(samson.Simulation.NeighborSearch.ParticleSystemGridPBC method)
(samson.Simulation.NeighborSearch.ParticleSystemPBC method)
getNeighbors() (samson.Simulation.NeighborSearch.ParticleSystem method)
(samson.Simulation.NeighborSearch.ParticleSystemGrid method)
(samson.Simulation.NeighborSearch.ParticleSystemGridPBC method)
(samson.Simulation.NeighborSearch.ParticleSystemPBC method)
getNextAminoAcid() (samson.Modeling.StructuralModel.Residue method)
getNextAsset() (samson.DataModel.Asset.Asset method)
getNextCamera() (samson.DataModel.Document.Camera method)
getNextConformation() (samson.Modeling.StructuralModel.Conformation method)
getNextDocument() (samson.DataModel.Document.Document method)
getNextDynamicalNode() (samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.Root method)
getNextGroup() (samson.DataModel.DataGraph.Group method)
getNextLabel() (samson.DataModel.Document.Label method)
getNextModel() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
getNextNode() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getNextNucleicAcid() (samson.Modeling.StructuralModel.Residue method)
getNextPath() (samson.Modeling.StructuralModel.Path method)
getNextResidue() (samson.Modeling.StructuralModel.Residue method)
getNextSimulator() (samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
getNextStructuralNode() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
getNitrogen() (samson.Modeling.StructuralModel.Backbone method)
getNode() (in module samson.Facade.SAMSON)
(samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Material method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.DataGraph.NodeIndexer method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getNodeGroupList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getNodes() (in module samson.Facade.SAMSON)
(samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.DataGraph.NodeIndexer method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getNumberOfBondedAtoms() (samson.Modeling.StructuralModel.Atom method)
getNumberOfBonds() (samson.Modeling.StructuralModel.Atom method)
getNumberOfChangedPositions() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
getNumberOfElements() (in module samson.Facade.SAMSON)
getNumberOfHydrogens() (samson.Modeling.StructuralModel.Atom method)
getOppositeAtom() (samson.Modeling.StructuralModel.Bond method)
getOrientation() (samson.DataModel.Type.spatialTransform method)
(samson.Modeling.StructuralModel.StructuralModel method)
getOxygen() (samson.Modeling.StructuralModel.Backbone method)
getParent() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getParticleSystem() (samson.Modeling.InteractionModel.ParticleSystem method)
getPathFromUser() (in module samson.Facade.SAMSON)
getPathList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getPeriod() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getPeriodicBoundaryConditions() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
getPosition() (samson.DataModel.Document.Label method)
(samson.DataModel.Type.spatialTransform method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.StructuralModel method)
getPositionChanged() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
getPositionData() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getPreviousAminoAcid() (samson.Modeling.StructuralModel.Residue method)
getPreviousAsset() (samson.DataModel.Asset.Asset method)
getPreviousCamera() (samson.DataModel.Document.Camera method)
getPreviousConformation() (samson.Modeling.StructuralModel.Conformation method)
getPreviousDocument() (samson.DataModel.Document.Document method)
getPreviousDynamicalNode() (samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.Root method)
getPreviousGroup() (samson.DataModel.DataGraph.Group method)
getPreviousLabel() (samson.DataModel.Document.Label method)
getPreviousModel() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
getPreviousNode() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getPreviousNucleicAcid() (samson.Modeling.StructuralModel.Residue method)
getPreviousPath() (samson.Modeling.StructuralModel.Path method)
getPreviousResidue() (samson.Modeling.StructuralModel.Residue method)
getPreviousSimulator() (samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
getPreviousStructuralNode() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
getProjectionMatrix() (samson.DataModel.Document.Camera method)
getProjectionMatrixTranspose() (samson.DataModel.Document.Camera method)
getPropertyModelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getProxy() (in module samson.Facade.SAMSON)
getRecordType() (samson.Modeling.StructuralModel.Atom method)
getResidue() (samson.Modeling.StructuralModel.Atom method)
getResidueTypeFromString() (samson.Modeling.StructuralModel.Residue static method)
getResidueTypeString() (samson.Modeling.StructuralModel.Residue static method)
getRoot() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getRootNodes() (samson.DataModel.DataGraph.NodeIndexer method)
getRotationVelocity() (samson.DataModel.Document.Camera method)
getRow() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
getSAMSONElementsPath() (in module samson.Facade.SAMSON)
getSAMSONPath() (in module samson.Facade.SAMSON)
getScratchPath() (in module samson.Facade.SAMSON)
getSecondaryStructureTypeString() (samson.Modeling.StructuralModel.Residue method)
getSegment() (samson.Modeling.StructuralModel.Atom method)
getSelectedNodes() (samson.DataModel.Document.Document method)
getSideChain() (samson.Modeling.StructuralModel.Residue method)
getSideChainCharge() (samson.Modeling.StructuralModel.Residue static method)
getSideChainChargeString() (samson.Modeling.StructuralModel.Residue static method)
getSideChainPolarity() (samson.Modeling.StructuralModel.Residue static method)
getSideChainPolarityString() (samson.Modeling.StructuralModel.Residue static method)
getSimulationFlag() (in module samson.Facade.SAMSON)
getSimulatorList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
getStateUpdater() (samson.Simulation.Simulator.SimulatorParticleSystem method)
getStatusBit() (samson.Modeling.StructuralModel.Atom method)
getStringFromUser() (in module samson.Facade.SAMSON)
getStructuralModelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getStructuralParticleIndexer() (samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getStructuralRoot() (samson.Modeling.StructuralModel.StructuralModel method)
getSubstructure() (samson.Modeling.StructuralModel.Atom method)
getSYBYLType() (samson.Modeling.StructuralModel.Atom method)
getTargetDestination() (samson.DataModel.Document.Camera method)
getTargetPosition() (samson.DataModel.Document.Camera method)
getTargetVelocity() (samson.DataModel.Document.Camera method)
getThisNode() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getTime() (in module samson.Facade.SAMSON)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getTimeData() (samson.Modeling.StructuralModel.Path method)
getTransform (samson.DataModel.Document.Camera attribute)
getTransform() (samson.Modeling.StructuralModel.StructuralModel method)
getTypeString() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node static method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
getUpVector() (samson.DataModel.Document.Camera method)
getUpVectorDestination() (samson.DataModel.Document.Camera method)
getUserDataPath() (in module samson.Facade.SAMSON)
getVanDerWaalsRadius() (in module samson.Facade.SAMSON)
(samson.Modeling.Element.ElementTable static method)
getVelocity() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getVelocityData() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
getVersionNumber() (in module samson.Facade.SAMSON)
getViewMatrix() (samson.DataModel.Document.Camera method)
getViewMatrixTranspose() (samson.DataModel.Document.Camera method)
getViewportHeight() (in module samson.Facade.SAMSON)
getViewportPositionFromWorldPosition() (in module samson.Facade.SAMSON)
getViewportWidth() (in module samson.Facade.SAMSON)
getViewProjectionMatrix() (samson.DataModel.Document.Camera method)
getViewProjectionMatrixTranspose() (samson.DataModel.Document.Camera method)
getViewProjectionMatrixTransposeInverse() (samson.DataModel.Document.Camera method)
getVisualModelList() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
getWorldPositionFromFrustumPosition() (samson.DataModel.Document.Camera method)
getX() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
getY() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
getZ() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
getZetaAtom() (samson.Modeling.StructuralModel.SideChain method)
GHz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
gigadalton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsDalton attribute)
gigahertz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
gigatesla (class in samson.DataModel.Quantity)
GLN (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
GLU (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
GLX (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
GLY (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Gold (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
gram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsDalton attribute)
(samson.DataModel.Quantity.unitsSI attribute)
gray (class in samson.DataModel.Quantity)
green (samson.DataModel.Type.Color attribute)
Grid (class in samson.Modeling.StructuralModel)
Group (class in samson.DataModel.DataGraph)
(class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
group (samson.Core.Class.ClassAttribute attribute)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.StructuralModel.Atom attribute)
Group.NodeType (class in samson.DataModel.DataGraph)
(class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
groupSelection() (samson.DataModel.Document.Document method)
GT (class in samson.DataModel.Quantity)
Gy (class in samson.DataModel.Quantity)
H
H (class in samson.DataModel.Quantity)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Hafnium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hartree (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsKilocaloriePerMole attribute)
(samson.DataModel.Quantity.unitsSI attribute)
hasAltLocation (samson.Modeling.StructuralModel.Atom attribute)
hasAminoAcidChi1Angle() (samson.Modeling.StructuralModel.Residue method)
hasAminoAcidChi1AngleForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasAminoAcidChi2Angle() (samson.Modeling.StructuralModel.Residue method)
hasAminoAcidChi2AngleForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasAminoAcidChi3Angle() (samson.Modeling.StructuralModel.Residue method)
hasAminoAcidChi3AngleForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasAminoAcidChi4Angle() (samson.Modeling.StructuralModel.Residue method)
hasAminoAcidChi4AngleForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasAminoAcidChi5Angle() (samson.Modeling.StructuralModel.Residue method)
hasAminoAcidChi5AngleForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasAnisotropicTFactors (samson.Modeling.StructuralModel.Atom attribute)
hasAromaticity (samson.Modeling.StructuralModel.Atom attribute)
hasChainID (samson.Modeling.StructuralModel.Atom attribute)
hasComment (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
hasCompleteAminoAcidBackbone (samson.Modeling.StructuralModel.Residue attribute)
hasConnectivityAnnotationInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
hasCrystallographicAndTransformationInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
hasCustomType (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Bond attribute)
hasDissociationConstant (samson.Modeling.StructuralModel.Residue attribute)
hasDissociationConstantForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasFormalCharge (samson.Modeling.StructuralModel.Atom attribute)
hasGeometry (samson.Modeling.StructuralModel.Atom attribute)
hasHeterogenInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
hasHybridization (samson.Modeling.StructuralModel.Atom attribute)
hasHydrophobicity (samson.Modeling.StructuralModel.Residue attribute)
hasHydrophobicityForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasIndex() (samson.DataModel.DataGraph.NodeIndexer method)
hasInsertionCode (samson.Modeling.StructuralModel.Atom attribute)
hasMiscellaneousInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
hasName (samson.Modeling.StructuralModel.Atom attribute)
hasNode() (samson.DataModel.DataGraph.NodeIndexer method)
hasOccupancy (samson.Modeling.StructuralModel.Atom attribute)
hasOneOf() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
hasOxidationState (samson.Modeling.StructuralModel.Atom attribute)
hasOxidationState() (samson.Modeling.Element.Element method)
(samson.Modeling.Element.ElementTable static method)
hasPartialCharge (samson.Modeling.StructuralModel.Atom attribute)
hasPrimaryStructureInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
hasRecordType (samson.Modeling.StructuralModel.Atom attribute)
hasResidueSequenceNumber (samson.Modeling.StructuralModel.Atom attribute)
hasResonance (samson.Modeling.StructuralModel.Atom attribute)
hasSecondaryStructureInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
hasSerialNumber (samson.Modeling.StructuralModel.Atom attribute)
hasSideChainCharge (samson.Modeling.StructuralModel.Residue attribute)
hasSideChainChargeForResidueType() (samson.Modeling.StructuralModel.Residue static method)
hasSideChainPolarity (samson.Modeling.StructuralModel.Residue attribute)
hasSideChainPolarityForResidueType() (samson.Modeling.StructuralModel.Residue static method)
Hassium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hasStatusBit (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
hasStructuralID (samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
hasSubstructureSequenceNumber (samson.Modeling.StructuralModel.Atom attribute)
hasSYBYLType (samson.Modeling.StructuralModel.Atom attribute)
hasTemperatureFactor (samson.Modeling.StructuralModel.Atom attribute)
hasTitleInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
hasWaterFlag (samson.Modeling.StructuralModel.Atom attribute)
hBar (class in samson.DataModel.Quantity)
hcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
HCLfromSRGB() (samson.DataModel.Type.ColorConversion static method)
He (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hectoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
hectocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
hectogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
hectokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
hectometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
hectomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Helium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
henry (class in samson.DataModel.Quantity)
hertz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
HessaEtAl2005 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
heterogenInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
Hf (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Hg (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hideProgressBar() (in module samson.Facade.SAMSON)
highlightingFlag (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Label attribute)
(samson.GUI.Action.Action attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
HIS (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
hK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
hm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
hmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Ho (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hold() (in module samson.Facade.SAMSON)
Holmium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Hs (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
HSVfromSRGB() (samson.DataModel.Type.ColorConversion static method)
hue1 (samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
hue2 (samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
hybridization (samson.Modeling.StructuralModel.Atom attribute)
hybridizationString (samson.Modeling.StructuralModel.Atom attribute)
Hydrogen (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
hydrophobicityScale (samson.Modeling.StructuralModel.Residue attribute)
hydrophobicityScaleString (samson.Modeling.StructuralModel.Residue attribute)
Hz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
I
I (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
identity (samson.DataModel.Type.spatialTransform attribute)
ILE (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Importer (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
importFromFile() (in module samson.Facade.SAMSON)
In (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Indium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
inertia66 (class in samson.DataModel.Type)
inertiaFlag (samson.DataModel.Document.Camera attribute)
informUser() (in module samson.Facade.SAMSON)
initialize() (samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
initializeInteractions() (samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
initializeNeighborLists() (samson.Simulation.NeighborSearch.ParticleSystem method)
(samson.Simulation.NeighborSearch.ParticleSystemGrid method)
(samson.Simulation.NeighborSearch.ParticleSystemGridPBC method)
(samson.Simulation.NeighborSearch.ParticleSystemPBC method)
insert() (samson.Modeling.StructuralModel.Path method)
insertionCode (samson.Modeling.StructuralModel.Atom attribute)
insertStructuralParticle() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
Inspector (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
InspectorFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
intensity (class in samson.DataModel.Quantity)
InteractionModel (class in samson.Modeling.InteractionModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
InteractionModel.NodeType (class in samson.Modeling.InteractionModel)
InteractionModelArticulatedBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
InteractionModelParticleSystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
InteractionModelParticleSystemFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
InteractionModelRigidBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
interactionModelType (samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
intersectGroupNodesWithSelection() (samson.DataModel.Document.Document method)
interval (class in samson.DataModel.Type)
intervalVector3 (class in samson.DataModel.Type)
inverse() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.spatialTransform method)
inverseAg (class in samson.DataModel.Quantity)
inverseAm (class in samson.DataModel.Quantity)
inverseAmountOfSubstance (class in samson.DataModel.Quantity)
inverseAngstrom (class in samson.DataModel.Quantity)
inverseArea (class in samson.DataModel.Quantity)
inverseAs (class in samson.DataModel.Quantity)
inverseAttogram (class in samson.DataModel.Quantity)
inverseAttometer (class in samson.DataModel.Quantity)
inverseAttosecond (class in samson.DataModel.Quantity)
inverseCentigram (class in samson.DataModel.Quantity)
inverseCentimeter (class in samson.DataModel.Quantity)
inverseCentisecond (class in samson.DataModel.Quantity)
inverseCg (class in samson.DataModel.Quantity)
inverseCm (class in samson.DataModel.Quantity)
inverseCs (class in samson.DataModel.Quantity)
inverseCubicAm (class in samson.DataModel.Quantity)
inverseCubicAngstrom (class in samson.DataModel.Quantity)
inverseCubicAttometer (class in samson.DataModel.Quantity)
inverseCubicCentimeter (class in samson.DataModel.Quantity)
inverseCubicCm (class in samson.DataModel.Quantity)
inverseCubicDam (class in samson.DataModel.Quantity)
inverseCubicDecameter (class in samson.DataModel.Quantity)
inverseCubicDecimeter (class in samson.DataModel.Quantity)
inverseCubicDistance (class in samson.DataModel.Quantity)
inverseCubicDm (class in samson.DataModel.Quantity)
inverseCubicFemtometer (class in samson.DataModel.Quantity)
inverseCubicFm (class in samson.DataModel.Quantity)
inverseCubicHectometer (class in samson.DataModel.Quantity)
inverseCubicHm (class in samson.DataModel.Quantity)
inverseCubicKilometer (class in samson.DataModel.Quantity)
inverseCubicKm (class in samson.DataModel.Quantity)
inverseCubicLength (class in samson.DataModel.Quantity)
inverseCubicM (class in samson.DataModel.Quantity)
inverseCubicMeter (class in samson.DataModel.Quantity)
inverseCubicMicrometer (class in samson.DataModel.Quantity)
inverseCubicMillimeter (class in samson.DataModel.Quantity)
inverseCubicMm (class in samson.DataModel.Quantity)
inverseCubicNanometer (class in samson.DataModel.Quantity)
inverseCubicNm (class in samson.DataModel.Quantity)
inverseCubicPicometer (class in samson.DataModel.Quantity)
inverseCubicPm (class in samson.DataModel.Quantity)
inverseCubicUm (class in samson.DataModel.Quantity)
inverseCubicYm (class in samson.DataModel.Quantity)
inverseCubicYoctometer (class in samson.DataModel.Quantity)
inverseCubicZeptometer (class in samson.DataModel.Quantity)
inverseCubicZm (class in samson.DataModel.Quantity)
inverseDag (class in samson.DataModel.Quantity)
inverseDam (class in samson.DataModel.Quantity)
inverseDecagram (class in samson.DataModel.Quantity)
inverseDecameter (class in samson.DataModel.Quantity)
inverseDecigram (class in samson.DataModel.Quantity)
inverseDecimeter (class in samson.DataModel.Quantity)
inverseDecisecond (class in samson.DataModel.Quantity)
inverseDg (class in samson.DataModel.Quantity)
inverseDistance (class in samson.DataModel.Quantity)
inverseDm (class in samson.DataModel.Quantity)
inverseDs (class in samson.DataModel.Quantity)
inverseFemtogram (class in samson.DataModel.Quantity)
inverseFemtometer (class in samson.DataModel.Quantity)
inverseFemtosecond (class in samson.DataModel.Quantity)
inverseFg (class in samson.DataModel.Quantity)
inverseFm (class in samson.DataModel.Quantity)
inverseForce (class in samson.DataModel.Quantity)
inverseFs (class in samson.DataModel.Quantity)
inverseG (class in samson.DataModel.Quantity)
inverseGram (class in samson.DataModel.Quantity)
inverseHectogram (class in samson.DataModel.Quantity)
inverseHectometer (class in samson.DataModel.Quantity)
inverseHg (class in samson.DataModel.Quantity)
inverseHm (class in samson.DataModel.Quantity)
inverseInertia66 (class in samson.DataModel.Type)
inverseIntensity (class in samson.DataModel.Quantity)
inverseKg (class in samson.DataModel.Quantity)
inverseKilogram (class in samson.DataModel.Quantity)
inverseKilometer (class in samson.DataModel.Quantity)
inverseKm (class in samson.DataModel.Quantity)
inverseLength (class in samson.DataModel.Quantity)
inverseLength3 (class in samson.DataModel.Type)
inverseLengthInverseMass (class in samson.DataModel.Quantity)
inverseLuminousIntensity (class in samson.DataModel.Quantity)
inverseM (class in samson.DataModel.Quantity)
inverseMass (class in samson.DataModel.Quantity)
inverseMass33 (class in samson.DataModel.Type)
inverseMeter (class in samson.DataModel.Quantity)
inverseMg (class in samson.DataModel.Quantity)
,
[1]
inverseMicrogram (class in samson.DataModel.Quantity)
inverseMicrometer (class in samson.DataModel.Quantity)
inverseMicrosecond (class in samson.DataModel.Quantity)
inverseMilligram (class in samson.DataModel.Quantity)
inverseMillimeter (class in samson.DataModel.Quantity)
inverseMillisecond (class in samson.DataModel.Quantity)
inverseMm (class in samson.DataModel.Quantity)
inverseMomentOfInertia (class in samson.DataModel.Quantity)
inverseMomentOfInertia33 (class in samson.DataModel.Type)
inverseMomentum (class in samson.DataModel.Quantity)
inverseMomentum3 (class in samson.DataModel.Type)
inverseMs (class in samson.DataModel.Quantity)
,
[1]
inverseNanogram (class in samson.DataModel.Quantity)
inverseNanometer (class in samson.DataModel.Quantity)
inverseNanosecond (class in samson.DataModel.Quantity)
inverseNg (class in samson.DataModel.Quantity)
inverseNm (class in samson.DataModel.Quantity)
inverseNs (class in samson.DataModel.Quantity)
inversePg (class in samson.DataModel.Quantity)
inversePicogram (class in samson.DataModel.Quantity)
inversePicometer (class in samson.DataModel.Quantity)
inversePicosecond (class in samson.DataModel.Quantity)
inversePm (class in samson.DataModel.Quantity)
inversePs (class in samson.DataModel.Quantity)
inverseS (class in samson.DataModel.Quantity)
inverseSecond (class in samson.DataModel.Quantity)
inverseSquareAm (class in samson.DataModel.Quantity)
inverseSquareAmountOfSubstance (class in samson.DataModel.Quantity)
inverseSquareAngstrom (class in samson.DataModel.Quantity)
inverseSquareAttometer (class in samson.DataModel.Quantity)
inverseSquareCentimeter (class in samson.DataModel.Quantity)
inverseSquareCm (class in samson.DataModel.Quantity)
inverseSquareDam (class in samson.DataModel.Quantity)
inverseSquareDecameter (class in samson.DataModel.Quantity)
inverseSquareDecimeter (class in samson.DataModel.Quantity)
inverseSquareDistance (class in samson.DataModel.Quantity)
inverseSquareDm (class in samson.DataModel.Quantity)
inverseSquareFemtometer (class in samson.DataModel.Quantity)
inverseSquareFemtosecond (class in samson.DataModel.Quantity)
inverseSquareFm (class in samson.DataModel.Quantity)
inverseSquareHectometer (class in samson.DataModel.Quantity)
inverseSquareHm (class in samson.DataModel.Quantity)
inverseSquareIntensity (class in samson.DataModel.Quantity)
inverseSquareKilometer (class in samson.DataModel.Quantity)
inverseSquareKm (class in samson.DataModel.Quantity)
inverseSquareLength (class in samson.DataModel.Quantity)
inverseSquareLuminousIntensity (class in samson.DataModel.Quantity)
inverseSquareM (class in samson.DataModel.Quantity)
inverseSquareMass (class in samson.DataModel.Quantity)
inverseSquareMeter (class in samson.DataModel.Quantity)
inverseSquareMicrometer (class in samson.DataModel.Quantity)
inverseSquareMillimeter (class in samson.DataModel.Quantity)
inverseSquareMm (class in samson.DataModel.Quantity)
inverseSquareNanometer (class in samson.DataModel.Quantity)
inverseSquareNm (class in samson.DataModel.Quantity)
inverseSquarePicometer (class in samson.DataModel.Quantity)
inverseSquarePm (class in samson.DataModel.Quantity)
inverseSquareTemperature (class in samson.DataModel.Quantity)
inverseSquareTime (class in samson.DataModel.Quantity)
inverseSquareUm (class in samson.DataModel.Quantity)
inverseSquareYm (class in samson.DataModel.Quantity)
inverseSquareYoctometer (class in samson.DataModel.Quantity)
inverseSquareZeptometer (class in samson.DataModel.Quantity)
inverseSquareZm (class in samson.DataModel.Quantity)
inverseTemperature (class in samson.DataModel.Quantity)
inverseTime (class in samson.DataModel.Quantity)
inverseTransformAcceleration() (samson.DataModel.Type.spatialTransform method)
inverseTransformVelocity() (samson.DataModel.Type.spatialTransform method)
inverseUm (class in samson.DataModel.Quantity)
inverseVolume (class in samson.DataModel.Quantity)
inverseYg (class in samson.DataModel.Quantity)
inverseYm (class in samson.DataModel.Quantity)
inverseYoctogram (class in samson.DataModel.Quantity)
inverseYoctometer (class in samson.DataModel.Quantity)
inverseYoctosecond (class in samson.DataModel.Quantity)
inverseYs (class in samson.DataModel.Quantity)
inverseZeptogram (class in samson.DataModel.Quantity)
inverseZeptometer (class in samson.DataModel.Quantity)
inverseZeptosecond (class in samson.DataModel.Quantity)
inverseZg (class in samson.DataModel.Quantity)
inverseZm (class in samson.DataModel.Quantity)
inverseZs (class in samson.DataModel.Quantity)
Iodine (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Ir (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Iridium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Iron (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
isAmideBond (samson.Modeling.StructuralModel.Bond attribute)
isAminoAcid (samson.Modeling.StructuralModel.Residue attribute)
isAminoAcidResidueType() (samson.Modeling.StructuralModel.Residue static method)
isAttachedToHydrogenBondDonor (samson.Modeling.StructuralModel.Atom attribute)
isCarbonylBond (samson.Modeling.StructuralModel.Bond attribute)
isCarboxylOxygen (samson.Modeling.StructuralModel.Atom attribute)
isContainedIn() (samson.DataModel.Type.intervalVector3 method)
isCreated (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Label attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
isDimensionless (samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsDalton attribute)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsKilocaloriePerMole attribute)
(samson.DataModel.Quantity.unitsSI attribute)
isDiscoverable (samson.Core.Class.ClassProxy attribute)
(samson.GUI.Action.Action attribute)
isDonorborneHydrogen (samson.Modeling.StructuralModel.Atom attribute)
isDynamicalModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isEmpty (samson.DataModel.DataGraph.NodeIndexer attribute)
isEmpty() (samson.DataModel.Type.interval method)
isErased (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Label attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
isEsterBond (samson.Modeling.StructuralModel.Bond attribute)
isFromAminoAcidBackbone (samson.Modeling.StructuralModel.Atom attribute)
isFromNucleicAcidBackbone (samson.Modeling.StructuralModel.Atom attribute)
isHighlighted (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Label attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
isHolding() (in module samson.Facade.SAMSON)
isHydrogenBondAcceptor (samson.Modeling.StructuralModel.Atom attribute)
isHydrogenBondDonor (samson.Modeling.StructuralModel.Atom attribute)
isIn() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isInChain (samson.Modeling.StructuralModel.Atom attribute)
isInMolecule (samson.Modeling.StructuralModel.Atom attribute)
isInResidue (samson.Modeling.StructuralModel.Atom attribute)
isInSegment (samson.Modeling.StructuralModel.Atom attribute)
isInSubstructure (samson.Modeling.StructuralModel.Atom attribute)
isInteractionModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isLinking() (samson.Modeling.StructuralModel.Bond method)
isMesh() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isMetal (samson.Modeling.Element.Element attribute)
(samson.Modeling.StructuralModel.Atom attribute)
isMetal() (samson.Modeling.Element.ElementTable static method)
isModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isMoving() (samson.DataModel.Document.Camera method)
isNitroOxygen (samson.Modeling.StructuralModel.Atom attribute)
isNucleicAcid (samson.Modeling.StructuralModel.Residue attribute)
isNucleicAcidResidueType() (samson.Modeling.StructuralModel.Residue static method)
isoelectricPointPH (samson.Modeling.StructuralModel.Residue attribute)
isOneOf() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isPrimaryAmideBond (samson.Modeling.StructuralModel.Bond attribute)
isProgressBarStopped() (in module samson.Facade.SAMSON)
isPropertyModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isRedoing() (in module samson.Facade.SAMSON)
isSecondaryAmideBond (samson.Modeling.StructuralModel.Bond attribute)
isSelected (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Label attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
isSerializable (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Color.ColorPalette attribute)
(samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
(samson.DataModel.Color.ColorSchemeCPK attribute)
(samson.DataModel.Color.ColorSchemeConstant attribute)
(samson.DataModel.Color.ColorSchemePerAttribute_dimensionless attribute)
(samson.DataModel.Color.ColorSchemePerAttribute_double attribute)
(samson.DataModel.Color.ColorSchemePerAttribute_float attribute)
(samson.DataModel.Color.ColorSchemePerAttribute_int attribute)
(samson.DataModel.Color.ColorSchemePerChainID attribute)
(samson.DataModel.Color.ColorSchemePerFormalCharge attribute)
(samson.DataModel.Color.ColorSchemePerOccupancy attribute)
(samson.DataModel.Color.ColorSchemePerPartialCharge attribute)
(samson.DataModel.Color.ColorSchemePerResidueHydrophobicity attribute)
(samson.DataModel.Color.ColorSchemePerResidueSequenceNumber attribute)
(samson.DataModel.Color.ColorSchemePerResidueType attribute)
(samson.DataModel.Color.ColorSchemePerSecondaryStructureType attribute)
(samson.DataModel.Color.ColorSchemePerSideChainCharge attribute)
(samson.DataModel.Color.ColorSchemePerSideChainPolarity attribute)
(samson.DataModel.Color.ColorSchemePerTemperatureFactor attribute)
(samson.DataModel.DataGraph.ColorScheme attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Material attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Type.Color attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
isSimulator() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isStructuralModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isStructuralParticle() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isSulfoneOxygen (samson.Modeling.StructuralModel.Atom attribute)
isTerminal (samson.Modeling.StructuralModel.Residue attribute)
isTertiaryAmideBond (samson.Modeling.StructuralModel.Bond attribute)
isThiocarboxylOxygen (samson.Modeling.StructuralModel.Atom attribute)
isType() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
isUndoing() (in module samson.Facade.SAMSON)
isValid (samson.Core.Container.UUID attribute)
isVisible (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Label attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
isVisualModel() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
J
J (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsKilocaloriePerMole attribute)
(samson.DataModel.Quantity.unitsSI attribute)
joule (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsKilocaloriePerMole attribute)
(samson.DataModel.Quantity.unitsSI attribute)
joulePerKelvin (class in samson.DataModel.Quantity)
joulePerMole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsKilocaloriePerMole attribute)
(samson.DataModel.Quantity.unitsSI attribute)
joulePerMoleToElectronvolt (samson.DataModel.Quantity.unitsSI attribute)
joulePerMoleToHartree (samson.DataModel.Quantity.unitsSI attribute)
joulePerMoleToKilocaloriePerMole (samson.DataModel.Quantity.unitsSI attribute)
jouleSecond (class in samson.DataModel.Quantity)
jPerK (class in samson.DataModel.Quantity)
jPerMol (class in samson.DataModel.Quantity)
JPerMol (samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsKilocaloriePerMole attribute)
(samson.DataModel.Quantity.unitsSI attribute)
JPerMolToEh (samson.DataModel.Quantity.unitsSI attribute)
JPerMolToeV (samson.DataModel.Quantity.unitsSI attribute)
JperMolTokcalPerMol (samson.DataModel.Quantity.unitsSI attribute)
jS (class in samson.DataModel.Quantity)
K
K (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
kA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Kat (class in samson.DataModel.Quantity)
katal (class in samson.DataModel.Quantity)
kB (samson.DataModel.Type.constant attribute)
kcalPerMol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsSI attribute)
kcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
kDa (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsDalton attribute)
kelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
kg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsDalton attribute)
(samson.DataModel.Quantity.unitsSI attribute)
KHz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
kiloampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
kilocaloriePerMole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsSI attribute)
kilocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
kilodalton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsDalton attribute)
kilogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsDalton attribute)
(samson.DataModel.Quantity.unitsSI attribute)
kilohertz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
kilojoule (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsSI attribute)
kilojoulePerMole (class in samson.DataModel.Quantity)
kilokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
kilometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
kilomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
kJ (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsSI attribute)
kjPerMol (class in samson.DataModel.Quantity)
kK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
km (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
kmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Kr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Krypton (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
KyteDoolittle1982 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
L
La (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Label (class in samson.DataModel.Document)
(samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Label.NodeType (class in samson.DataModel.Document)
LabelFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
Lanthanide (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
Lanthanum (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Lawrencium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Lead (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
leftAtom (samson.Modeling.StructuralModel.Bond attribute)
leftBackBottomView() (samson.DataModel.Document.Camera method)
leftBackTopView() (samson.DataModel.Document.Camera method)
leftFrontBottomView() (samson.DataModel.Document.Camera method)
leftFrontTopView() (samson.DataModel.Document.Camera method)
leftView() (samson.DataModel.Document.Camera method)
length (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.Modeling.StructuralModel.Bond attribute)
length3 (class in samson.DataModel.Type)
lengthInterval (class in samson.DataModel.Type)
lengthInterval3 (class in samson.DataModel.Type)
lengthMass (class in samson.DataModel.Quantity)
lengthPerForce (class in samson.DataModel.Quantity)
lengthsSum() (samson.DataModel.Type.intervalVector3 method)
LEU (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Li (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Linear (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Lithium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Livermorium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
log() (in module samson.DataModel.Quantity)
Loop (samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.AnimationType attribute)
lowerBound() (samson.DataModel.Type.intervalVector3 method)
Lr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Lu (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
lumen (class in samson.DataModel.Quantity)
luminance (samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
luminance1 (samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
luminance2 (samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
luminancePower (samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
luminousIntensity (class in samson.DataModel.Quantity)
Lutetium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
lux (class in samson.DataModel.Quantity)
Lv (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
lx (class in samson.DataModel.Quantity)
(samson.DataModel.Type.vector6 attribute)
ly (samson.DataModel.Type.vector6 attribute)
LYS (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
lz (samson.DataModel.Type.vector6 attribute)
M
m (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsSI attribute)
mA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
magenta (samson.DataModel.Type.Color attribute)
Magnesium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
magneticDensity (class in samson.DataModel.Quantity)
major (samson.Core.Container.VersionNumber attribute)
makeEulerRotationZYZ() (samson.DataModel.Type.matrix33 method)
makeInteractionModel() (in module samson.Facade.SAMSON)
makeNeigborSearch() (in module samson.Facade.SAMSON)
makePropertyModel() (in module samson.Facade.SAMSON)
makeSimulator() (in module samson.Facade.SAMSON)
makeStateUpdater() (in module samson.Facade.SAMSON)
makeVisualModel() (in module samson.Facade.SAMSON)
Manganese (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
mass (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
mass33 (class in samson.DataModel.Type)
Material (class in samson.DataModel.DataGraph)
Materials (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
matrix33 (class in samson.DataModel.Type)
matrix66 (class in samson.DataModel.Type)
maximumChroma (samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
maximumDisplayRadius (samson.DataModel.Document.Label attribute)
Mc (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
mcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Md (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
MDa (class in samson.DataModel.Quantity)
mDa (samson.DataModel.Quantity.unitsDalton attribute)
me (class in samson.DataModel.Quantity)
Medicine (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
megadalton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsDalton attribute)
megahertz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Meitnerium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Mendelevium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Mercury (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Mesh (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
MET (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Metalloid (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
metalSubcategory (samson.Modeling.Element.Element attribute)
(samson.Modeling.StructuralModel.Atom attribute)
metalSubcategory() (samson.Modeling.Element.ElementTable static method)
metalSubcategoryString (samson.Modeling.Element.Element attribute)
(samson.Modeling.StructuralModel.Atom attribute)
metalSubcategoryString() (samson.Modeling.Element.ElementTable static method)
meter (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsSI attribute)
Metrology (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
mg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Mg (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
MHz (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
microampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
microcandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
microgram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
microkelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
micrometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
micromole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
micron (class in samson.DataModel.Quantity)
microsecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
midPoint (samson.Modeling.StructuralModel.Bond attribute)
milliampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
millicandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
milligram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
millikelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
millimeter (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
millimole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
millisecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
minimize() (in module samson.Facade.SAMSON)
minimumDisplayRadius (samson.DataModel.Document.Label attribute)
minor (samson.Core.Container.VersionNumber attribute)
miscellaneousInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
mK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
mm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
mmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Mn (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Mo (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
mobilityFlag (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
Model (class in samson.Modeling.Model)
Model.NodeType (class in samson.Modeling.Model)
Modeling (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
ModelNode (class in samson.Modeling.Model)
ModelNode.NodeType (class in samson.Modeling.Model)
modelType (samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
mol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
mole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Molecule (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Molecule.NodeType (class in samson.Modeling.StructuralModel)
moleculeName (samson.Modeling.StructuralModel.Atom attribute)
Molybdenum (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
momentOfInertia (class in samson.DataModel.Quantity)
momentOfInertia33 (class in samson.DataModel.Type)
momentum (class in samson.DataModel.Quantity)
momentum3 (class in samson.DataModel.Type)
momentumInterval (class in samson.DataModel.Type)
momentumInterval3 (class in samson.DataModel.Type)
MoneraEtAl1995 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
MoonFleming2011 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
Moscovium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
motionCrossForce() (samson.DataModel.Type.vector6 method)
ms (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Mt (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
N
N (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
nA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
NA (samson.DataModel.Type.constant attribute)
Na (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
name (samson.Core.Class.Class.Category attribute)
(samson.Core.Class.Class.Type attribute)
(samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
(samson.Core.Class.ClassProxy attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.Color.ColorPalette attribute)
(samson.DataModel.Color.ColorPalette.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDiverging.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitative.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequential.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL.ColorPaletteType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.GUI.Action.Action attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.AnimationType attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
(samson.Modeling.StructuralModel.Residue.SecondaryStructureType attribute)
(samson.Modeling.StructuralModel.Residue.SideChainCharge attribute)
(samson.Modeling.StructuralModel.Residue.SideChainPolarity attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
nanoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
nanocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
nanogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
nanokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
nanometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsSI attribute)
nanomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
nanonewton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
nanonewtonPerPicometer (class in samson.DataModel.Quantity)
nanosecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Nb (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ncd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Nd (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Ne (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
nearPlane (samson.DataModel.Document.Camera attribute)
Negative (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainCharge attribute)
NeighborSearch (class in samson.Simulation.NeighborSearch)
NeighborSearchArticulatedBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
NeighborSearchParticleSystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
NeighborSearchRigidBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
Neodymium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Neon (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Neptunium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Neutral (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainCharge attribute)
neutralPoint (samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
newton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
ng (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Nh (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Ni (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Nickel (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Nihonium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Niobium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Nitrogen (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
nK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
nm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsSI attribute)
nmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
nN (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
nNPerPm (class in samson.DataModel.Quantity)
No (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Nobelium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
NobleGas (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
Node (class in samson.DataModel.DataGraph)
(class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
Node.NodeType (class in samson.DataModel.DataGraph)
(class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
NodeGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
NodeGUI (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
nodeIndex (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Label attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
NodeIndexer (class in samson.DataModel.DataGraph)
None (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
Nonpolar (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainPolarity attribute)
norm() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.vector3 method)
norm2() (samson.DataModel.Type.vector3 method)
normalize() (samson.DataModel.Type.vector3 method)
normalizedVersion() (samson.DataModel.Type.vector3 method)
normalizedVersionWithUnits() (samson.DataModel.Type.vector3 method)
normalizeWithUnits() (samson.DataModel.Type.vector3 method)
Np (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ns (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
numberOfChangedForces (samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
numberOfChangedMomentums (samson.Modeling.DynamicalModel.ParticleSystem attribute)
numberOfChangedPositions (samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
numberOfElements (samson.Modeling.Element.ElementTable attribute)
numberOfSteps (samson.Modeling.StructuralModel.Path attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
numberOfStructuralParticles (samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Path attribute)
O
O (class in samson.DataModel.Quantity)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
occupancy (samson.Modeling.StructuralModel.Atom attribute)
Octahedral (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Og (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Oganesson (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ohm (class in samson.DataModel.Quantity)
Once (samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.AnimationType attribute)
Optics (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
order (samson.Modeling.StructuralModel.Bond attribute)
orientAminoAcidSideChain() (samson.Modeling.StructuralModel.Residue method)
orthographicProjectionFlag (samson.DataModel.Document.Camera attribute)
orthonormalize() (samson.DataModel.Type.matrix33 method)
Os (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Osmium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
overlaps() (samson.DataModel.Type.intervalVector3 method)
overlapsAdvanced() (samson.DataModel.Type.intervalVector3 method)
oxidationState (samson.Modeling.StructuralModel.Atom attribute)
Oxygen (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
P
P (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Pa (class in samson.DataModel.Quantity)
pA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Pa (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Palladium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
partialCharge (samson.Modeling.StructuralModel.Atom attribute)
Particle (class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
Particle.NodeType (class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
Particles (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
ParticleSystem (class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.InteractionModel)
(class in samson.Simulation.NeighborSearch)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
ParticleSystem.NodeType (class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.InteractionModel)
ParticleSystemGrid (class in samson.Simulation.NeighborSearch)
ParticleSystemGridPBC (class in samson.Simulation.NeighborSearch)
ParticleSystemPBC (class in samson.Simulation.NeighborSearch)
Pascal (class in samson.DataModel.Quantity)
patch (samson.Core.Container.VersionNumber attribute)
Path (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Path.AnimationType (class in samson.Modeling.StructuralModel)
Path.NodeType (class in samson.Modeling.StructuralModel)
Pb (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
pcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Pd (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
PentagonalBipyramidal (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
PentagonalPlanar (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
PentagonalPyramidal (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
period (samson.Modeling.Element.Element attribute)
(samson.Modeling.StructuralModel.Atom attribute)
periodicBoundaryConditionsFlag (samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
perS (class in samson.DataModel.Quantity)
perSecond (class in samson.DataModel.Quantity)
perYgPerSquarePm (class in samson.DataModel.Quantity)
perYoctogramPerSquarePicometer (class in samson.DataModel.Quantity)
pg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Pharmacy (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
PHE (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Phosphorus (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Photonics (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Physics (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Pi (samson.DataModel.Type.constant attribute)
picoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
picocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
picogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
picokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
picometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsSI attribute)
picometerPerFemtosecond (class in samson.DataModel.Quantity)
picometerPerSecond (class in samson.DataModel.Quantity)
picometerPerSecond3 (class in samson.DataModel.Type)
picometerPerSquareFemtosecond (class in samson.DataModel.Quantity)
picomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
piconewton (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
picosecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
pK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Platinum (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Plutonium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
pm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsSI attribute)
Pm (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
pmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
pmPerFs (class in samson.DataModel.Quantity)
pmPerS (class in samson.DataModel.Quantity)
pmPerSquareFs (class in samson.DataModel.Quantity)
pN (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Po (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Polar (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainPolarity attribute)
Polonium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
position (class in samson.DataModel.Quantity)
position3 (class in samson.DataModel.Type)
positionInterval (class in samson.DataModel.Type)
positionInterval3 (class in samson.DataModel.Type)
Positive (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainCharge attribute)
PosttransitionMetal (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
Potassium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
pow() (in module samson.DataModel.Quantity)
Pr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Praseodymium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
pressure (class in samson.DataModel.Quantity)
primaryStructureInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
printDataGraphState() (in module samson.Facade.SAMSON)
printDebugInfo() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.DataGraph.NodeIndexer method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.DataModel.Type.Color method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.Element.Element method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Grid method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.NeighborSearch.NeighborSearch method)
(samson.Simulation.NeighborSearch.ParticleSystem method)
(samson.Simulation.NeighborSearch.ParticleSystemGrid method)
(samson.Simulation.NeighborSearch.ParticleSystemGridPBC method)
(samson.Simulation.NeighborSearch.ParticleSystemPBC method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
printFullMemoryUsage() (in module samson.Facade.SAMSON)
printMemoryUsage() (in module samson.Facade.SAMSON)
printRendererState() (in module samson.Facade.SAMSON)
printUndoStack() (in module samson.Facade.SAMSON)
PRO (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
processEvents() (in module samson.Facade.SAMSON)
Promethium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Properties (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
PropertyModel (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
PropertyModelFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
PropertyModelFunction (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Protactinium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Protein (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
protonMass (samson.DataModel.Type.constant attribute)
ps (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
PseudoAtom (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
PseudoAtom.NodeType (class in samson.Modeling.StructuralModel)
Pt (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Pu (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
PYL (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Q
Qualitative (samson.DataModel.Color.ColorPalette attribute)
(samson.DataModel.Color.ColorPalette.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDiverging.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitative.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequential.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL.ColorPaletteType attribute)
qualitativeHCLCold (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLDarkPastel (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLDarkPastel2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLDefault (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLDynamic (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLHarmonic (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLPastel (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLSet (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLSet2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
qualitativeHCLWarm (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
quasiStaticUpdate() (samson.DataModel.Type.matrix33 method)
R
Ra (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
rad (class in samson.DataModel.Quantity)
radian (class in samson.DataModel.Quantity)
radian3 (class in samson.DataModel.Type)
radianInterval3 (class in samson.DataModel.Type)
radianPerSecond (class in samson.DataModel.Quantity)
radianPerSecond3 (class in samson.DataModel.Type)
radianPerSecondInterval3 (class in samson.DataModel.Type)
Radium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Radon (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
radPerS (class in samson.DataModel.Quantity)
RadToDeg (samson.DataModel.Type.constant attribute)
randDouble1() (samson.DataModel.Type.random method)
randDouble2() (samson.DataModel.Type.random method)
randDouble3() (samson.DataModel.Type.random method)
randLong() (samson.DataModel.Type.random method)
random (class in samson.DataModel.Type)
randRes53() (samson.DataModel.Type.random method)
randUnitSphere3() (samson.DataModel.Type.random method)
randUnsignedLong() (samson.DataModel.Type.random method)
randUUID() (samson.DataModel.Type.random method)
Rb (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Re (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ReactiveNonMetal (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
ReadOnly (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
ReadWrite (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
ReadWriteClear (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
ReadWriteClearArray (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassAttribute.Type attribute)
recordTypeSize (samson.Modeling.StructuralModel.Atom attribute)
red (samson.DataModel.Type.Color attribute)
redo() (in module samson.Facade.SAMSON)
ReferenceIndexer (class in samson.Core.Reference)
ReferenceTarget (class in samson.Core.Reference)
remove() (samson.Modeling.StructuralModel.Path method)
removeChild() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
removeGroupNodesFromSelection() (samson.DataModel.Document.Document method)
removeHydrogens() (samson.Modeling.StructuralModel.Atom method)
removeMaterial() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
removeNode() (samson.DataModel.DataGraph.NodeIndexer method)
removeNodeFromSelection() (samson.DataModel.Document.Document method)
removeParticle() (samson.Modeling.DynamicalModel.ParticleSystem method)
removeParticles() (samson.Modeling.DynamicalModel.ParticleSystem method)
removeStructuralParticle() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
RenderProgram (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
replaceAtom() (samson.Modeling.StructuralModel.StructuralModel static method)
replaceBond() (samson.Modeling.StructuralModel.StructuralModel static method)
requestViewportUpdate() (in module samson.Facade.SAMSON)
reset() (samson.DataModel.Type.intervalVector3 method)
Residue (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Residue.HydrophobicityScale (class in samson.Modeling.StructuralModel)
Residue.NodeType (class in samson.Modeling.StructuralModel)
Residue.ResidueType (class in samson.Modeling.StructuralModel)
Residue.SecondaryStructureType (class in samson.Modeling.StructuralModel)
Residue.SideChainCharge (class in samson.Modeling.StructuralModel)
Residue.SideChainPolarity (class in samson.Modeling.StructuralModel)
residueName (samson.Modeling.StructuralModel.Atom attribute)
residueSequenceNumber (samson.Modeling.StructuralModel.Atom attribute)
residueSequenceNumberString (samson.Modeling.StructuralModel.Atom attribute)
residueType (samson.Modeling.StructuralModel.Residue attribute)
residueTypeString (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
resonance (samson.Modeling.StructuralModel.Atom attribute)
restore() (samson.Modeling.StructuralModel.Conformation method)
revoluteJointZAxisMatrix() (samson.DataModel.Type.matrix33 method)
Rf (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Rg (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
RGBfromCIEXYZ() (samson.DataModel.Type.ColorConversion static method)
RGBfromSRGB() (samson.DataModel.Type.ColorConversion static method)
Rh (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Rhenium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Rhodium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
rightAtom (samson.Modeling.StructuralModel.Bond attribute)
rightBackBottomView() (samson.DataModel.Document.Camera method)
rightBackTopView() (samson.DataModel.Document.Camera method)
rightFrontBottomView() (samson.DataModel.Document.Camera method)
rightFrontTopView() (samson.DataModel.Document.Camera method)
rightMultiply3D() (samson.DataModel.Type.spatialTransform method)
rightMultiplyInverse3D() (samson.DataModel.Type.spatialTransform method)
rightView() (samson.DataModel.Document.Camera method)
RigidBody (class in samson.Modeling.DynamicalModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
RigidBody.NodeType (class in samson.Modeling.DynamicalModel)
RigidBodySystem (class in samson.Modeling.DynamicalModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
RigidBodySystem.NodeType (class in samson.Modeling.DynamicalModel)
Rn (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Roentgenium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Root (class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
root() (in module samson.DataModel.Quantity)
Root.NodeType (class in samson.Modeling.DynamicalModel)
(class in samson.Modeling.StructuralModel)
rotate() (samson.DataModel.Document.Camera method)
(samson.Modeling.StructuralModel.StructuralModel method)
rotateClockwise() (samson.DataModel.Document.Camera method)
rotateCounterClockwise() (samson.DataModel.Document.Camera method)
rotateDown() (samson.DataModel.Document.Camera method)
rotateLeft() (samson.DataModel.Document.Camera method)
rotateRight() (samson.DataModel.Document.Camera method)
rotateUp() (samson.DataModel.Document.Camera method)
round() (in module samson.DataModel.Quantity)
roundForPBC() (samson.Modeling.DynamicalModel.ParticleSystem method)
Ru (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Rubidium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Ruthenium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Rutherfordium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
S
S (class in samson.DataModel.Quantity)
s (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsSI attribute)
S (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Samarium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
samson.Core (module)
samson.Core.Class (module)
samson.Core.Container (module)
samson.Core.Reference (module)
samson.DataModel (module)
samson.DataModel.Asset (module)
samson.DataModel.Color (module)
samson.DataModel.DataGraph (module)
samson.DataModel.Document (module)
samson.DataModel.Quantity (module)
,
[1]
samson.DataModel.Type (module)
samson.Facade (module)
samson.Facade.SAMSON (module)
samson.GUI (module)
samson.GUI.Action (module)
samson.Modeling (module)
samson.Modeling.DynamicalModel (module)
samson.Modeling.Element (module)
samson.Modeling.InteractionModel (module)
samson.Modeling.Model (module)
samson.Modeling.StructuralModel (module)
samson.Modeling.VisualModel (module)
samson.Simulation (module)
samson.Simulation.NeighborSearch (module)
samson.Simulation.Simulator (module)
samson.Simulation.StateUpdater (module)
Sb (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Sc (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Scandium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
SDKVersionNumber (samson.Core.Class.ClassProxy attribute)
Se (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Seaborgium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
SEC (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
second (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsSI attribute)
secondaryStructureInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
secondaryStructureType (samson.Modeling.StructuralModel.Residue attribute)
secondaryStructureTypeString (samson.Modeling.StructuralModel.Residue attribute)
seed() (samson.DataModel.Type.random method)
Seesaw (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Segment (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Segment.NodeType (class in samson.Modeling.StructuralModel)
segmentName (samson.Modeling.StructuralModel.Atom attribute)
selectGroupNodes() (samson.DataModel.Document.Document method)
selectionFlag (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Label attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
Selenium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Sequential (samson.DataModel.Color.ColorPalette attribute)
(samson.DataModel.Color.ColorPalette.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDiverging.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitative.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequential.ColorPaletteType attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL.ColorPaletteType attribute)
sequentialHCLBlue (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLBlue2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLBlueGreenYellow (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLBlueYellow (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLBlueYellow2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLDarkMint (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLGray (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLGreen (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLGreen2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLGreenYellow (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLHeat (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLInferno (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLLightGray (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLOslo (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLPlasma (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLPurple (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLPurple2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLPurpleBlue (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLPurpleOrange (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLRed (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLRed2 (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLRedYellow (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLTeal (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
sequentialHCLViridis (samson.DataModel.Color.ColorPaletteDefaultPalette attribute)
SER (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
SeredaEtAl1994 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
serialNumber (samson.Modeling.StructuralModel.Atom attribute)
setActiveCamera() (samson.DataModel.Document.Document method)
setActiveEditor() (in module samson.Facade.SAMSON)
setActiveStructuralModel() (in module samson.Facade.SAMSON)
(samson.DataModel.Document.Document method)
setActivityFlag() (samson.Modeling.DynamicalModel.ParticleSystem method)
setBusy() (in module samson.Facade.SAMSON)
setChroma() (samson.DataModel.Color.ColorPaletteDiverging method)
(samson.DataModel.Color.ColorPaletteDivergingHCL method)
(samson.DataModel.Color.ColorPaletteSequential method)
(samson.DataModel.Color.ColorPaletteSequentialHCL method)
setColor() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
setColorScheme() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Material method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
setComment() (samson.Modeling.StructuralModel.Atom method)
setCurrentSelectionFilter() (in module samson.Facade.SAMSON)
setE1() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.spatialTransform method)
setE2() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.spatialTransform method)
setE3() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.spatialTransform method)
setE4() (samson.DataModel.Type.spatialTransform method)
setEmpty() (samson.DataModel.Type.spatialDomain method)
setEnergy() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setEnergyData() (samson.Modeling.StructuralModel.Path method)
setEyeDestination() (samson.DataModel.Document.Camera method)
setEyePosition() (samson.DataModel.Document.Camera method)
setEyeVelocity() (samson.DataModel.Document.Camera method)
setForce() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setForceData() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setHeadPosition() (samson.DataModel.Document.Camera method)
setHue() (samson.DataModel.Color.ColorPaletteDiverging method)
(samson.DataModel.Color.ColorPaletteDivergingHCL method)
(samson.DataModel.Color.ColorPaletteQualitative method)
(samson.DataModel.Color.ColorPaletteQualitativeHCL method)
(samson.DataModel.Color.ColorPaletteSequential method)
(samson.DataModel.Color.ColorPaletteSequentialHCL method)
setIdentity() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialTransform method)
setLuminance() (samson.DataModel.Color.ColorPaletteDiverging method)
(samson.DataModel.Color.ColorPaletteDivergingHCL method)
(samson.DataModel.Color.ColorPaletteSequential method)
(samson.DataModel.Color.ColorPaletteSequentialHCL method)
setMass() (samson.Modeling.DynamicalModel.ParticleSystem method)
setMaterial() (samson.DataModel.Asset.Asset method)
(samson.DataModel.DataGraph.Group method)
(samson.DataModel.DataGraph.Node method)
(samson.DataModel.Document.Camera method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Document.Label method)
(samson.Modeling.DynamicalModel.ArticulatedBody method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.Node method)
(samson.Modeling.DynamicalModel.Particle method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBody method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
(samson.Modeling.Model.Model method)
(samson.Modeling.Model.ModelNode method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Node method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
(samson.Simulation.Simulator.Simulator method)
(samson.Simulation.Simulator.SimulatorParticleSystem method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
setMomentum() (samson.Modeling.DynamicalModel.ParticleSystem method)
setName() (samson.Modeling.StructuralModel.Residue method)
setOrientation() (samson.DataModel.Type.spatialTransform method)
(samson.Modeling.StructuralModel.StructuralModel method)
setPeriodicBoundaryConditions() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
setPosition() (samson.DataModel.Type.spatialTransform method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.StructuralModel method)
setPositionData() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setPositionOnTetrahedron() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
setProgressBarValue() (in module samson.Facade.SAMSON)
setRotationVelocity() (samson.DataModel.Document.Camera method)
setSimulationFlag() (in module samson.Facade.SAMSON)
setStatusBit() (samson.Modeling.StructuralModel.Atom method)
setStatusMessage() (in module samson.Facade.SAMSON)
setSYBYLType() (samson.Modeling.StructuralModel.Atom method)
setTargetDestination() (samson.DataModel.Document.Camera method)
setTargetPosition() (samson.DataModel.Document.Camera method)
setTargetVelocity() (samson.DataModel.Document.Camera method)
setTime() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setTimeData() (samson.Modeling.StructuralModel.Path method)
setTransform() (samson.Modeling.StructuralModel.StructuralModel method)
setup() (samson.GUI.Action.Action method)
setUpVector() (samson.DataModel.Document.Camera method)
setUpVectorDestination() (samson.DataModel.Document.Camera method)
setVelocity() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setVelocityData() (samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Path method)
setX() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
setY() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
setZ() (samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.PseudoAtom method)
setZero() (samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
Sg (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
showProgressBar() (in module samson.Facade.SAMSON)
showProperties() (in module samson.Facade.SAMSON)
shrink() (samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
Si (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
SideChain (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
SideChain.NodeType (class in samson.Modeling.StructuralModel)
sideChainCharge (samson.Modeling.StructuralModel.Residue attribute)
sideChainChargeString (samson.Modeling.StructuralModel.Residue attribute)
sideChainPolarity (samson.Modeling.StructuralModel.Residue attribute)
sideChainPolarityString (samson.Modeling.StructuralModel.Residue attribute)
siemens (class in samson.DataModel.Quantity)
sievert (class in samson.DataModel.Quantity)
Silicon (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Silver (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Simulation (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
Simulator (class in samson.Simulation.Simulator)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
Simulator.NodeType (class in samson.Simulation.Simulator)
SimulatorArticulatedBodySystem (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
SimulatorParticleSystem (class in samson.Simulation.Simulator)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
SimulatorParticleSystem.NodeType (class in samson.Simulation.Simulator)
SimulatorRigidBodySystem (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
simulatorType (samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
sin() (in module samson.DataModel.Quantity)
Single (samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
size (samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.NodeIndexer attribute)
sizeOfUnitSystem (samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsDalton attribute)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsKilocaloriePerMole attribute)
(samson.DataModel.Quantity.unitsSI attribute)
Sm (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
smoothingWindowSize (samson.Modeling.StructuralModel.Path attribute)
Sn (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
snap() (in module samson.Facade.SAMSON)
Sodium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
SP (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
SP2 (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
SP3 (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
SP3D (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
SP3D2 (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
spatialDomain (class in samson.DataModel.Type)
spatialTransform (class in samson.DataModel.Type)
speedOfLight (samson.DataModel.Type.constant attribute)
split() (samson.DataModel.Type.intervalVector3 method)
sqrt() (in module samson.DataModel.Quantity)
squareAm (class in samson.DataModel.Quantity)
squareAmountOfSubstance (class in samson.DataModel.Quantity)
squareAngstrom (class in samson.DataModel.Quantity)
SquareAntiprismatic (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
squareAttometer (class in samson.DataModel.Quantity)
squareCentimeter (class in samson.DataModel.Quantity)
squareCm (class in samson.DataModel.Quantity)
squareDam (class in samson.DataModel.Quantity)
squareDecameter (class in samson.DataModel.Quantity)
squareDecimeter (class in samson.DataModel.Quantity)
squareDistance (class in samson.DataModel.Quantity)
squareDm (class in samson.DataModel.Quantity)
squareFemtometer (class in samson.DataModel.Quantity)
squareFm (class in samson.DataModel.Quantity)
squareHectometer (class in samson.DataModel.Quantity)
squareHm (class in samson.DataModel.Quantity)
squareIntensity (class in samson.DataModel.Quantity)
squareKilometer (class in samson.DataModel.Quantity)
squareKm (class in samson.DataModel.Quantity)
squareLength (class in samson.DataModel.Quantity)
squareLength3 (class in samson.DataModel.Type)
squareLengthInterval (class in samson.DataModel.Type)
squareLuminousIntensity (class in samson.DataModel.Quantity)
squareM (class in samson.DataModel.Quantity)
squareMass (class in samson.DataModel.Quantity)
squareMeter (class in samson.DataModel.Quantity)
squareMicrometer (class in samson.DataModel.Quantity)
squareMillimeter (class in samson.DataModel.Quantity)
squareMm (class in samson.DataModel.Quantity)
squareNanometer (class in samson.DataModel.Quantity)
squareNm (class in samson.DataModel.Quantity)
squarePicometer (class in samson.DataModel.Quantity)
SquarePlanar (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
squarePm (class in samson.DataModel.Quantity)
SquarePyramidal (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
squareTemperature (class in samson.DataModel.Quantity)
squareTime (class in samson.DataModel.Quantity)
squareUm (class in samson.DataModel.Quantity)
squareYm (class in samson.DataModel.Quantity)
squareYoctometer (class in samson.DataModel.Quantity)
squareZeptometer (class in samson.DataModel.Quantity)
squareZm (class in samson.DataModel.Quantity)
sr (class in samson.DataModel.Quantity)
Sr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
SRGBfromCIEXYZ() (samson.DataModel.Type.ColorConversion static method)
SRGBfromCylindricalCIELab() (samson.DataModel.Type.ColorConversion static method)
SRGBfromCylindricalCIELuv() (samson.DataModel.Type.ColorConversion static method)
SRGBfromHCL() (samson.DataModel.Type.ColorConversion static method)
SRGBfromHSV() (samson.DataModel.Type.ColorConversion static method)
SRGBfromRGB() (samson.DataModel.Type.ColorConversion static method)
startSimulation() (in module samson.Facade.SAMSON)
startTimer() (in module samson.Facade.SAMSON)
StateUpdater (class in samson.Simulation.StateUpdater)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StateUpdater.NodeType (class in samson.Simulation.StateUpdater)
StateUpdaterArticulatedBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StateUpdaterParticleSystem (class in samson.Simulation.StateUpdater)
(samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StateUpdaterParticleSystem.NodeType (class in samson.Simulation.StateUpdater)
StateUpdaterRigidBodySystem (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
stateUpdaterType (samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
statusBit (samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
statusBitSize (samson.Modeling.StructuralModel.Atom attribute)
stepDuration (samson.Modeling.StructuralModel.Path attribute)
stepSize (samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
steradian (class in samson.DataModel.Quantity)
stop() (samson.DataModel.Document.Camera method)
stopSimulation() (in module samson.Facade.SAMSON)
stopTimer() (in module samson.Facade.SAMSON)
str() (samson.DataModel.Type.interval method)
(samson.DataModel.Type.intervalVector3 method)
(samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
(samson.DataModel.Type.spatialDomain method)
(samson.DataModel.Type.spatialTransform method)
(samson.DataModel.Type.vector3 method)
(samson.DataModel.Type.vector6 method)
stride (samson.Modeling.StructuralModel.Path attribute)
Strontium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
StructuralGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
structuralID (samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
StructuralModel (class in samson.Modeling.StructuralModel)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModel.NodeType (class in samson.Modeling.StructuralModel)
StructuralModelConformation (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
StructuralModelNode (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeAtom (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeBackbone (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeBond (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeChain (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeGroup (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeMolecule (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeParticle (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeProtein (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodePseudoAtom (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeResidue (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeRoot (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeSegment (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelNodeSideChain (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralModelPath (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
StructuralParticle (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
substructureName (samson.Modeling.StructuralModel.Atom attribute)
substructureSequenceNumber (samson.Modeling.StructuralModel.Atom attribute)
substructureSequenceNumberString (samson.Modeling.StructuralModel.Atom attribute)
Sulfur (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Sv (class in samson.DataModel.Quantity)
swap() (samson.DataModel.Type.vector3 method)
swapColumns() (samson.DataModel.Type.matrix33 method)
swapRows() (samson.DataModel.Type.matrix33 method)
SYBYLTypeSize (samson.Modeling.StructuralModel.Atom attribute)
symbol (samson.Modeling.Element.Element attribute)
symmetrize() (samson.DataModel.Type.matrix66 method)
T
T (class in samson.DataModel.Quantity)
Ta (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
tan() (in module samson.DataModel.Quantity)
Tantalum (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Tb (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Tc (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Te (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Technetium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Tellurium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
temperature (class in samson.DataModel.Quantity)
temperatureFactor (samson.Modeling.StructuralModel.Atom attribute)
Tennessine (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Terbium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
tesla (class in samson.DataModel.Quantity)
Tetrahedral (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
text (samson.DataModel.Document.Label attribute)
Th (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Thallium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Thorium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
THR (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Thulium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
thumbnailFileName (samson.DataModel.Asset.Asset attribute)
Ti (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
time (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
Tin (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Titanium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
titleInformation (samson.Modeling.StructuralModel.StructuralModel attribute)
Tl (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Tm (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
toDebugString() (samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
toggleSimulation() (in module samson.Facade.SAMSON)
toHCL() (samson.DataModel.Type.ColorConversion static method)
toHSV() (samson.DataModel.Type.ColorConversion static method)
topView() (samson.DataModel.Document.Camera method)
toQuaternion() (samson.DataModel.Type.matrix33 method)
toRotationVector() (samson.DataModel.Type.matrix33 method)
torque3 (class in samson.DataModel.Type)
toString() (samson.Core.Container.UUID method)
(samson.Core.Container.VersionNumber method)
(samson.DataModel.Asset.Asset method)
(samson.DataModel.Document.Document method)
(samson.DataModel.Document.Folder method)
(samson.DataModel.Quantity.unitsAU method)
(samson.DataModel.Quantity.unitsDalton method)
(samson.DataModel.Quantity.unitsElectronvolt method)
(samson.DataModel.Quantity.unitsKilocaloriePerMole method)
(samson.DataModel.Quantity.unitsSI method)
(samson.DataModel.Type.Color method)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.Group method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
(samson.Modeling.DynamicalModel.Root method)
(samson.Modeling.StructuralModel.Atom method)
(samson.Modeling.StructuralModel.Backbone method)
(samson.Modeling.StructuralModel.Bond method)
(samson.Modeling.StructuralModel.Chain method)
(samson.Modeling.StructuralModel.Conformation method)
(samson.Modeling.StructuralModel.Group method)
(samson.Modeling.StructuralModel.Molecule method)
(samson.Modeling.StructuralModel.Particle method)
(samson.Modeling.StructuralModel.Path method)
(samson.Modeling.StructuralModel.PseudoAtom method)
(samson.Modeling.StructuralModel.Residue method)
(samson.Modeling.StructuralModel.Root method)
(samson.Modeling.StructuralModel.Segment method)
(samson.Modeling.StructuralModel.SideChain method)
(samson.Modeling.StructuralModel.StructuralModel method)
(samson.Modeling.VisualModel.VisualModel method)
Toxicology (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
trace() (samson.DataModel.Type.matrix33 method)
transform() (samson.DataModel.Document.Camera method)
(samson.Modeling.StructuralModel.StructuralModel method)
transformAcceleration() (samson.DataModel.Type.spatialTransform method)
transformForce() (samson.DataModel.Type.spatialTransform method)
transformInertia() (samson.DataModel.Type.spatialTransform method)
transformInertiaLeft() (samson.DataModel.Type.spatialTransform method)
transformInertiaRight() (samson.DataModel.Type.spatialTransform method)
transformInverseInertia() (samson.DataModel.Type.spatialTransform method)
transformInverseInertiaLeft() (samson.DataModel.Type.spatialTransform method)
transformInverseInertiaRight() (samson.DataModel.Type.spatialTransform method)
transformInverseInertiaTransposeRight() (samson.DataModel.Type.spatialTransform method)
transformPoint() (samson.DataModel.Type.spatialTransform method)
transformVelocity() (samson.DataModel.Type.spatialTransform method)
TransitionMetal (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
translate() (samson.DataModel.Document.Camera method)
(samson.Modeling.StructuralModel.StructuralModel method)
transpose() (samson.DataModel.Type.matrix33 method)
(samson.DataModel.Type.matrix66 method)
TricappedTrigonalPrismatic (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
trigger() (samson.GUI.Action.Action method)
TrigonalBipyramidal (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
TrigonalPlanar (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
TrigonalPrismatic (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
TrigonalPyramidal (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Triple (samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
TRP (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
trunc() (in module samson.DataModel.Quantity)
Ts (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
TShaped (samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
Tungsten (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
type (samson.Core.Class.ClassAttribute attribute)
(samson.Core.Class.ClassProxy attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Color.ColorPalette attribute)
(samson.DataModel.Color.ColorPaletteDiverging attribute)
(samson.DataModel.Color.ColorPaletteDivergingHCL attribute)
(samson.DataModel.Color.ColorPaletteQualitative attribute)
(samson.DataModel.Color.ColorPaletteQualitativeHCL attribute)
(samson.DataModel.Color.ColorPaletteSequential attribute)
(samson.DataModel.Color.ColorPaletteSequentialHCL attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Label attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
typeString (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Label attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
TYR (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
U
u (class in samson.DataModel.Quantity)
U (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
uA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
ucd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
ug (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
uK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
um (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
umol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Un (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Undefined (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Geometry attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.BondType attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
UndefinedSideChainCharge (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainCharge attribute)
UndefinedSideChainPolarity (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SideChainPolarity attribute)
undo() (in module samson.Facade.SAMSON)
unifiedAtomicMassUnit (class in samson.DataModel.Quantity)
unitsAU (class in samson.DataModel.Quantity)
unitsDalton (class in samson.DataModel.Quantity)
unitsElectronvolt (class in samson.DataModel.Quantity)
unitsKilocaloriePerMole (class in samson.DataModel.Quantity)
unitsSI (class in samson.DataModel.Quantity)
Unknown (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
(samson.Modeling.Element.Element.MetalSubcategory attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.Hybridization attribute)
Unstructured (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.SecondaryStructureType attribute)
update() (samson.Modeling.StructuralModel.Grid method)
updateInteractions() (samson.Modeling.InteractionModel.InteractionModel method)
(samson.Modeling.InteractionModel.ParticleSystem method)
updateNeighborLists() (samson.Simulation.NeighborSearch.ParticleSystem method)
(samson.Simulation.NeighborSearch.ParticleSystemGrid method)
(samson.Simulation.NeighborSearch.ParticleSystemGridPBC method)
(samson.Simulation.NeighborSearch.ParticleSystemPBC method)
updateState() (samson.DataModel.Document.Camera method)
(samson.Modeling.StructuralModel.Path method)
(samson.Simulation.StateUpdater.StateUpdater method)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem method)
updateStructuralNodes() (samson.Modeling.DynamicalModel.ArticulatedBodySystem method)
(samson.Modeling.DynamicalModel.DynamicalModel method)
(samson.Modeling.DynamicalModel.ParticleSystem method)
(samson.Modeling.DynamicalModel.RigidBodySystem method)
updateText() (samson.DataModel.Document.Label method)
upperBound() (samson.DataModel.Type.intervalVector3 method)
Uranium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
us (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
UUID (class in samson.Core.Container)
(samson.Core.Class.ClassProxy attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Folder attribute)
(samson.GUI.Action.Action attribute)
V
V (class in samson.DataModel.Quantity)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
VAL (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
value (samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsDalton attribute)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsKilocaloriePerMole attribute)
(samson.DataModel.Quantity.unitsSI attribute)
(samson.DataModel.Type.interval attribute)
(samson.DataModel.Type.intervalVector3 attribute)
(samson.DataModel.Type.matrix33 attribute)
(samson.DataModel.Type.matrix66 attribute)
(samson.DataModel.Type.vector3 attribute)
(samson.DataModel.Type.vector6 attribute)
Vanadium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
vanDerWaalsRadius (samson.Modeling.Element.Element attribute)
(samson.Modeling.StructuralModel.Atom attribute)
vector3 (class in samson.DataModel.Type)
vector6 (class in samson.DataModel.Type)
velocity (class in samson.DataModel.Quantity)
velocity3 (class in samson.DataModel.Type)
velocity6 (class in samson.DataModel.Type)
velocityInterval (class in samson.DataModel.Type)
velocityInterval3 (class in samson.DataModel.Type)
VersionNumber (class in samson.Core.Container)
versionNumber (samson.Core.Class.ClassProxy attribute)
visibilityFlag (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Label attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
Visualization (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Category attribute)
VisualModel (class in samson.Modeling.VisualModel)
(samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
(samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
VisualModel.NodeType (class in samson.Modeling.VisualModel)
VisualModelFactory (samson.Core.Class.Class attribute)
(samson.Core.Class.Class.Type attribute)
VisualModelMesh (samson.DataModel.Asset.Asset attribute)
(samson.DataModel.Asset.Asset.NodeType attribute)
(samson.DataModel.DataGraph.Group attribute)
(samson.DataModel.DataGraph.Group.NodeType attribute)
(samson.DataModel.DataGraph.Node attribute)
(samson.DataModel.DataGraph.Node.NodeType attribute)
(samson.DataModel.Document.Camera attribute)
(samson.DataModel.Document.Camera.NodeType attribute)
(samson.DataModel.Document.Document attribute)
(samson.DataModel.Document.Document.NodeType attribute)
(samson.DataModel.Document.Folder attribute)
(samson.DataModel.Document.Folder.NodeType attribute)
(samson.DataModel.Document.Label attribute)
(samson.DataModel.Document.Label.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody attribute)
(samson.Modeling.DynamicalModel.ArticulatedBody.NodeType attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem attribute)
(samson.Modeling.DynamicalModel.ArticulatedBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.DynamicalModel attribute)
(samson.Modeling.DynamicalModel.DynamicalModel.NodeType attribute)
(samson.Modeling.DynamicalModel.Group attribute)
(samson.Modeling.DynamicalModel.Group.NodeType attribute)
(samson.Modeling.DynamicalModel.Node attribute)
(samson.Modeling.DynamicalModel.Node.NodeType attribute)
(samson.Modeling.DynamicalModel.Particle attribute)
(samson.Modeling.DynamicalModel.Particle.NodeType attribute)
(samson.Modeling.DynamicalModel.ParticleSystem attribute)
(samson.Modeling.DynamicalModel.ParticleSystem.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBody attribute)
(samson.Modeling.DynamicalModel.RigidBody.NodeType attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem attribute)
(samson.Modeling.DynamicalModel.RigidBodySystem.NodeType attribute)
(samson.Modeling.DynamicalModel.Root attribute)
(samson.Modeling.DynamicalModel.Root.NodeType attribute)
(samson.Modeling.InteractionModel.InteractionModel attribute)
(samson.Modeling.InteractionModel.InteractionModel.NodeType attribute)
(samson.Modeling.InteractionModel.ParticleSystem attribute)
(samson.Modeling.InteractionModel.ParticleSystem.NodeType attribute)
(samson.Modeling.Model.Model attribute)
(samson.Modeling.Model.Model.NodeType attribute)
(samson.Modeling.Model.ModelNode attribute)
(samson.Modeling.Model.ModelNode.NodeType attribute)
(samson.Modeling.StructuralModel.Atom attribute)
(samson.Modeling.StructuralModel.Atom.NodeType attribute)
(samson.Modeling.StructuralModel.Backbone attribute)
(samson.Modeling.StructuralModel.Backbone.NodeType attribute)
(samson.Modeling.StructuralModel.Bond attribute)
(samson.Modeling.StructuralModel.Bond.NodeType attribute)
(samson.Modeling.StructuralModel.Chain attribute)
(samson.Modeling.StructuralModel.Chain.NodeType attribute)
(samson.Modeling.StructuralModel.Conformation attribute)
(samson.Modeling.StructuralModel.Conformation.NodeType attribute)
(samson.Modeling.StructuralModel.Group attribute)
(samson.Modeling.StructuralModel.Group.NodeType attribute)
(samson.Modeling.StructuralModel.Molecule attribute)
(samson.Modeling.StructuralModel.Molecule.NodeType attribute)
(samson.Modeling.StructuralModel.Node attribute)
(samson.Modeling.StructuralModel.Node.NodeType attribute)
(samson.Modeling.StructuralModel.Particle attribute)
(samson.Modeling.StructuralModel.Particle.NodeType attribute)
(samson.Modeling.StructuralModel.Path attribute)
(samson.Modeling.StructuralModel.Path.NodeType attribute)
(samson.Modeling.StructuralModel.PseudoAtom attribute)
(samson.Modeling.StructuralModel.PseudoAtom.NodeType attribute)
(samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.NodeType attribute)
(samson.Modeling.StructuralModel.Root attribute)
(samson.Modeling.StructuralModel.Root.NodeType attribute)
(samson.Modeling.StructuralModel.Segment attribute)
(samson.Modeling.StructuralModel.Segment.NodeType attribute)
(samson.Modeling.StructuralModel.SideChain attribute)
(samson.Modeling.StructuralModel.SideChain.NodeType attribute)
(samson.Modeling.StructuralModel.StructuralModel attribute)
(samson.Modeling.StructuralModel.StructuralModel.NodeType attribute)
(samson.Modeling.VisualModel.VisualModel attribute)
(samson.Modeling.VisualModel.VisualModel.NodeType attribute)
(samson.Simulation.Simulator.Simulator attribute)
(samson.Simulation.Simulator.Simulator.NodeType attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem attribute)
(samson.Simulation.Simulator.SimulatorParticleSystem.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdater attribute)
(samson.Simulation.StateUpdater.StateUpdater.NodeType attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem attribute)
(samson.Simulation.StateUpdater.StateUpdaterParticleSystem.NodeType attribute)
volt (class in samson.DataModel.Quantity)
voltage (class in samson.DataModel.Quantity)
volume (class in samson.DataModel.Quantity)
volume() (samson.DataModel.Type.intervalVector3 method)
W
W (class in samson.DataModel.Quantity)
(samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
waterFlag (samson.Modeling.StructuralModel.Atom attribute)
watt (class in samson.DataModel.Quantity)
Wb (class in samson.DataModel.Quantity)
weber (class in samson.DataModel.Quantity)
white (samson.DataModel.Type.Color attribute)
WimleyWhite1996 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
X
x (samson.DataModel.Type.intervalVector3 attribute)
(samson.DataModel.Type.vector3 attribute)
XAA (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Xe (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Xenon (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
XLE (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.ResidueType attribute)
Y
y (samson.DataModel.Type.intervalVector3 attribute)
(samson.DataModel.Type.vector3 attribute)
Y (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
yA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Yb (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
ycd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
yellow (samson.DataModel.Type.Color attribute)
yg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsDalton attribute)
(samson.DataModel.Quantity.unitsSI attribute)
ygPmPerFs (class in samson.DataModel.Quantity)
ygSquarePm (class in samson.DataModel.Quantity)
yK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
ym (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
ymol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
yoctoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
yoctocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
yoctogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsAU attribute)
(samson.DataModel.Quantity.unitsDalton attribute)
(samson.DataModel.Quantity.unitsSI attribute)
yoctogramPicometerPerFemtosecond (class in samson.DataModel.Quantity)
yoctogramSquarePicometer (class in samson.DataModel.Quantity)
yoctokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
yoctometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
yoctomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
yoctosecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
ys (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Ytterbium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Yttrium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Z
z (samson.DataModel.Type.intervalVector3 attribute)
(samson.DataModel.Type.vector3 attribute)
zA (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
zC (class in samson.DataModel.Quantity)
zcd (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
zeptoampere (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
zeptocandela (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
zeptocoulomb (class in samson.DataModel.Quantity)
zeptogram (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
zeptojoule (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsSI attribute)
zeptokelvin (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
zeptometer (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
zeptomole (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
zeptosecond (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
zero (samson.DataModel.Type.spatialTransform attribute)
zg (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
ZhaoLondon2006 (samson.Modeling.StructuralModel.Residue attribute)
(samson.Modeling.StructuralModel.Residue.HydrophobicityScale attribute)
Zinc (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
Zirconium (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
zJ (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsElectronvolt attribute)
(samson.DataModel.Quantity.unitsSI attribute)
zK (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
zm (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
zmol (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)
Zn (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
zoomIn() (samson.DataModel.Document.Camera method)
zoomOut() (samson.DataModel.Document.Camera method)
zoomTo() (samson.DataModel.Document.Camera method)
Zr (samson.Modeling.Element.Element attribute)
(samson.Modeling.Element.Element.ElementType attribute)
zs (class in samson.DataModel.Quantity)
(samson.DataModel.Quantity.unitsSI attribute)