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Sequence view#

SAMSON provides an interactive Sequence View which is in sync with the document: residues selected in a Sequence View become selected in the Document View and the 3D Viewport, and vice versa.

The Sequence View

Sequence Views let you colorize residues in the sequence based on biophysical properties, and these colors can be transferred to the residues in the 3D Viewport:

The Sequence View - Colorization

To access Sequence Views, either click the View sequence command from the Home menu:

View sequence action in the Home menu

or right-click on a structure and select Structural model > View sequence from the Context menu:

View sequence action in the Context menu

If a structure contains multiple chains, a pop-up will appear to let you choose which sequence(s) to view:

Open Ssequence Views for multiple chains

  • Selecting: use selected residues in downstream structure workflows.
  • Colorizing: apply meaningful colors to structures and visual models.
  • Visualize and present: return to visualization and presentation workflows.