Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z _ __add__() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) __contains__() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) __eq__() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) (samson.SBSpatialDomain method) (samson.SBSpatialTransform method) (samson.SBUserPlan method) (samson.SBUserPlan.Type method) (samson.SBUUID method) (samson.SBVersionNumber method) __ge__() (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) (samson.SBVersionNumber method) __gt__() (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) (samson.SBVersionNumber method) __iadd__() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) __imul__() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) __isub__() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) __itruediv__() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) __le__() (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) (samson.SBVersionNumber method) __lt__() (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) (samson.SBUserPlan method) (samson.SBUUID method) (samson.SBVersionNumber method) __mul__() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) (samson.SBSpatialTransform method) __ne__() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) (samson.SBSpatialDomain method) (samson.SBSpatialTransform method) (samson.SBUserPlan method) (samson.SBUserPlan.Type method) (samson.SBUUID method) (samson.SBVersionNumber method) __neg__() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) __radd__() (samson.SBPhysicalVector3 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) __rmul__() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) __rsub__() (samson.SBPhysicalVector3 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) __rtruediv__() (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) __sub__() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) __truediv__() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) A A (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) a0 (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) aA (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Ac (samson.SBElement attribute) (samson.SBElement.ElementType attribute) acceleration (class in samson.SBQuantity) acd (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) AcidicPolar (samson.SBResidue attribute) (samson.SBResidue.SideChainPolarity attribute) acos() (in module samson.SBQuantity) Actinide (samson.SBElement attribute) (samson.SBElement.MetalSubcategory attribute) Actinium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) activeFlag (samson.SBLight property) activityFlag (samson.SBSimulator property) add() (samson.SBPath method) addAtom() (samson.SBConformation method) (samson.SBParticleSystem method) (samson.SBPath method) addChild() (samson.SBNode method) addGroupNodesToSelection() (samson.SBDocument method) addHydrogens() (samson.SBAtom method) addHydrogensByResidueType() (samson.SBResidue method) addKeyframe() (samson.SBAnimation method) addMaterial() (samson.SBNode method) addNode() (samson.SBNodeIndexer method) addNodeToSelection() (samson.SBDocument method) addVisualPreset() (samson.SBVisualPresetGroup method) ag (class in samson.SBQuantity) Ag (samson.SBElement attribute) (samson.SBElement.ElementType attribute) ag (samson.SBQuantity.unitsSI property) aK (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Al (samson.SBElement attribute) (samson.SBElement.ElementType attribute) ALA (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) alignWithAxis() (samson.SBCamera method) alignWithPlane() (samson.SBCamera method) AlkaliMetal (samson.SBElement attribute) (samson.SBElement.MetalSubcategory attribute) AlkalineEarthMetal (samson.SBElement attribute) (samson.SBElement.MetalSubcategory attribute) alpha (samson.SBColor property) Alpha (samson.SBResidue attribute) (samson.SBResidue.SecondaryStructureType attribute) alphaInt (samson.SBColor property) alternateLocation (samson.SBAtom property) Aluminium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) am (class in samson.SBQuantity) Am (samson.SBElement attribute) (samson.SBElement.ElementType attribute) am (samson.SBQuantity.unitsSI property) ambientLight (samson.SBRenderPreset property) Americium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Amide (samson.SBBond attribute) (samson.SBBond.BondType attribute) aminoAcidOneLetterCode (samson.SBResidue property) amol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) amountOfSubstance (class in samson.SBQuantity) ampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) angstrom (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsSI property) angularAcceleration (class in samson.SBQuantity) angularVelocity (class in samson.SBQuantity) Animation (samson.SBNode attribute) (samson.SBNode.Type attribute) AnimationFactory (samson.SBClass attribute) (samson.SBClass.Type attribute) animationFlag (samson.SBPath property) animationType (samson.SBPath property) anisotropicCoefficient (samson.SBNodeMaterial property) anisotropicRotation (samson.SBNodeMaterial property) anisotropicTFactors (samson.SBAtom property) antiAliasingMultisamplingFactor (samson.SBRenderPreset property) antiAliasingPreset (samson.SBRenderPreset property) Antimony (samson.SBElement attribute) (samson.SBElement.ElementType attribute) App (samson.SBClass attribute) (samson.SBClass.Type attribute) apply() (samson.SBRenderPreset method) (samson.SBVisualPreset method) (samson.SBVisualPresetGroup method) Ar (samson.SBElement attribute) (samson.SBElement.ElementType attribute) area (class in samson.SBQuantity) area() (samson.SBPhysicalIAVector3 method) areNeighbors() (samson.SBNeighborSearchParticleSystem method) (samson.SBStructuralModelGrid method) ARG (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) Argon (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Aromatic (samson.SBBond attribute) (samson.SBBond.BondType attribute) aromaticity (samson.SBAtom property) Arsenic (samson.SBElement attribute) (samson.SBElement.ElementType attribute) ArticulatedBody (samson.SBNode attribute) (samson.SBNode.Type attribute) ArticulatedBodySystem (samson.SBNode attribute) (samson.SBNode.Type attribute) As (samson.SBElement attribute) (samson.SBElement.ElementType attribute) as (samson.SBQuantity.unitsSI property) asin() (in module samson.SBQuantity) askUser() (in module samson.SAMSON) ASN (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) ASP (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) aspectRatio (samson.SBCamera property) Assembly (samson.SBClass attribute) (samson.SBClass.Category attribute) Asset (samson.SBNode attribute) (samson.SBNode.Type attribute) assetFileName (samson.SBAsset property) AssetLibrary (samson.SBClass attribute) (samson.SBClass.Type attribute) Astatine (samson.SBElement attribute) (samson.SBElement.ElementType attribute) ASX (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) At (samson.SBElement attribute) (samson.SBElement.ElementType attribute) atan() (in module samson.SBQuantity) atan2() (in module samson.SBQuantity) Atom (samson.SBNode attribute) (samson.SBNode.Type attribute) atomicNumber (samson.SBAtom property) (samson.SBElement property) atomicWeight (samson.SBAtom property) (samson.SBElement property) atomRadiusRatioToVanDerWaalsRadius (samson.SBRenderPreset property) attoampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) attocandela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) attogram (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) attokelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) attometer (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) attomole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) attosecond (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Au (samson.SBElement attribute) (samson.SBElement.ElementType attribute) auAction (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) auCharge (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) auCoulombConstant (class in samson.SBQuantity) auMass (class in samson.SBQuantity) (samson.SBQuantity.unitsDalton property) (samson.SBQuantity.unitsSI property) auTime (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) autofocusFlag (samson.SBCamera property) avogadroConstant (samson.SBConstant attribute) ax (samson.SBPhysicalVector6 property) ay (samson.SBPhysicalVector6 property) az (samson.SBPhysicalVector6 property) B B (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Ba (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Backbone (samson.SBNode attribute) (samson.SBNode.Type attribute) backgroundImageBase64 (samson.SBRenderPreset property) backgroundImageMode (samson.SBRenderPreset property) backgroundType (samson.SBRenderPreset property) backView() (samson.SBCamera method) Barium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Base (samson.SBClass attribute) (samson.SBClass.Type attribute) BasicPolar (samson.SBResidue attribute) (samson.SBResidue.SideChainPolarity attribute) basisX (samson.SBCamera property) basisY (samson.SBCamera property) basisZ (samson.SBCamera property) Be (samson.SBElement attribute) (samson.SBElement.ElementType attribute) becquerel (class in samson.SBQuantity) beginFrame (samson.SBPresentation property) beginHolding() (in module samson.SAMSON) beginKeyframe (samson.SBAnimation property) Bent (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) Berkelium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Beryllium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) BestSpeed (samson.SBRenderPreset attribute) (samson.SBRenderPreset.AntiAliasingPreset attribute) Beta (samson.SBResidue attribute) (samson.SBResidue.SecondaryStructureType attribute) BetterSpeed (samson.SBRenderPreset attribute) (samson.SBRenderPreset.AntiAliasingPreset attribute) Bh (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Bi (samson.SBElement attribute) (samson.SBElement.ElementType attribute) BicappedTrigonalPrismatic (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) Biology (samson.SBClass attribute) (samson.SBClass.Category attribute) Bismuth (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Bk (samson.SBElement attribute) (samson.SBElement.ElementType attribute) black (samson.SBColor attribute) Black (samson.SBRenderPreset attribute) (samson.SBRenderPreset.BackgroundType attribute) block (samson.SBAtom property) (samson.SBElement property) bloomFlag (samson.SBRenderPreset property) bloomRadius (samson.SBRenderPreset property) bloomStrength (samson.SBRenderPreset property) bloomThreshold (samson.SBRenderPreset property) blue (samson.SBColor attribute) blueInt (samson.SBColor property) bohr (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Bohrium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) bohrRadius (samson.SBConstant attribute) boltzmannConstant (samson.SBConstant attribute) Bond (samson.SBNode attribute) (samson.SBNode.Type attribute) bondExists() (samson.SBStructuralModel static method) bondType (samson.SBBond property) Boron (samson.SBElement attribute) (samson.SBElement.ElementType attribute) bottomView() (samson.SBCamera method) Bounce (samson.SBPath attribute) (samson.SBPath.AnimationType attribute) bound() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) Bq (class in samson.SBQuantity) Br (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Bromine (samson.SBElement attribute) (samson.SBElement.ElementType attribute) C C (class in samson.SBQuantity) c (samson.SBConstant attribute) C (samson.SBElement attribute) (samson.SBElement.ElementType attribute) (samson.SBQuantity.unitsAU property) (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) cA (class in samson.SBQuantity) Ca (samson.SBElement attribute) (samson.SBElement.ElementType attribute) cA (samson.SBQuantity.unitsSI property) Cadmium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Caesium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Calcium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Californium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Camera (samson.SBAnimation attribute) (samson.SBAnimation.Category attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) CameraAnimation (samson.SBClass attribute) (samson.SBClass.Type attribute) canAddChild() (samson.SBNode method) canAddChildType() (samson.SBNode method) canAddKeyframe() (samson.SBAnimation method) canAddMaterial() (samson.SBNode method) canAddMaterialToNodeType() (samson.SBNode static method) canCreateMesh() (samson.SBVisualModel method) candela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) canHaveDescendantType() (samson.SBNode method) canHavePalette() (samson.SBNodeColorScheme method) canImportFromFile() (in module samson.SAMSON) canMoveKeyframe() (samson.SBAnimation method) canRemoveKeyframe() (samson.SBAnimation method) CappedOctahedral (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) CappedSquareAntiprismatic (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) CappedTrigonalPrismatic (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) captureViewportToFile() (in module samson.SAMSON) Carbon (samson.SBElement attribute) (samson.SBElement.ElementType attribute) castToInteractionModelParticleSystem() (samson.SBNode method) castToLabel() (samson.SBNode method) castToMesh() (samson.SBNode method) castToVisualModel() (samson.SBNode method) category (samson.SBAnimation property) categoryString() (samson.SBAnimation method) ccd (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) cd (class in samson.SBQuantity) Cd (samson.SBElement attribute) (samson.SBElement.ElementType attribute) cd (samson.SBQuantity.unitsSI property) Ce (samson.SBElement attribute) (samson.SBElement.ElementType attribute) ceil() (in module samson.SBQuantity) center() (samson.SBCamera method) (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) centerTransform() (samson.SBStructuralModel method) centiampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) centicandela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) centigram (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) centikelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) centimeter (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) centimole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) centisecond (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Cerium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Cf (samson.SBElement attribute) (samson.SBElement.ElementType attribute) cg (class in samson.SBQuantity) CG (samson.SBElement attribute) (samson.SBElement.ElementType attribute) cg (samson.SBQuantity.unitsSI property) Chain (samson.SBNode attribute) (samson.SBNode.Type attribute) chainID (samson.SBAtom property) chainIDString (samson.SBAtom property) chainName (samson.SBAtom property) Chemistry (samson.SBClass attribute) (samson.SBClass.Category attribute) Chlorine (samson.SBElement attribute) (samson.SBElement.ElementType attribute) chroma (samson.SBPaletteQualitative property) chroma1 (samson.SBPaletteDiverging property) (samson.SBPaletteFlexibleDivergingHCL property) (samson.SBPaletteSequential property) chroma2 (samson.SBPaletteFlexibleDivergingHCL property) (samson.SBPaletteSequential property) chroma3 (samson.SBPaletteFlexibleDivergingHCL property) chromaPower (samson.SBPaletteDiverging property) (samson.SBPaletteSequential property) chromaPower1 (samson.SBPaletteFlexibleDivergingHCL property) chromaPower2 (samson.SBPaletteFlexibleDivergingHCL property) Chromium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) CIELabfromCIEXYZ() (samson.SBColor static method) CIELabfromCylindricalCIELab() (samson.SBColor static method) CIELabfromSRGB() (samson.SBColor static method) CIELuvfromCIEXYZ() (samson.SBColor static method) CIELuvfromCylindricalCIELuv() (samson.SBColor static method) CIEXYZfromCIELab() (samson.SBColor static method) CIEXYZfromCIELuv() (samson.SBColor static method) CIEXYZfromRGB() (samson.SBColor static method) CIEXYZfromSRGB() (samson.SBColor static method) cK (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Cl (samson.SBElement attribute) (samson.SBElement.ElementType attribute) clear() (samson.SBNodeIndexer method) clearAltLocation() (samson.SBAtom method) clearAnisotropicTFactors() (samson.SBAtom method) clearAromaticity() (samson.SBAtom method) clearcoatCoefficient (samson.SBNodeMaterial property) clearcoatRoughness (samson.SBNodeMaterial property) clearColor() (samson.SBVisualPreset method) clearColorScheme() (samson.SBVisualPreset method) clearComment() (samson.SBAtom method) (samson.SBStructuralGroup method) clearConnectivityAnnotationInformation() (samson.SBStructuralModel method) clearCrystallographicAndTransformationInformation() (samson.SBStructuralModel method) clearCustomType() (samson.SBAtom method) (samson.SBBond method) clearFormalCharge() (samson.SBAtom method) clearGeometry() (samson.SBAtom method) clearHeterogenInformation() (samson.SBStructuralModel method) clearHighlighting() (samson.SBDocument method) clearHybridization() (samson.SBAtom method) clearInsertionCode() (samson.SBAtom method) clearMiscellaneousInformation() (samson.SBStructuralModel method) clearName() (samson.SBAtom method) clearOccupancy() (samson.SBAtom method) clearOxidationState() (samson.SBAtom method) clearPartialCharge() (samson.SBAtom method) clearPrimaryStructureInformation() (samson.SBStructuralModel method) clearRecordType() (samson.SBAtom method) clearResonance() (samson.SBAtom method) clearSecondaryStructureInformation() (samson.SBStructuralModel method) clearSelection() (samson.SBDocument method) clearSelectionFilter() (samson.SBVisualPreset method) clearSelector() (samson.SBVisualPreset method) clearSerialNumber() (samson.SBAtom method) clearStatusBit() (samson.SBAtom method) (samson.SBBond method) (samson.SBStructuralGroup method) clearStructuralID() (samson.SBStructuralGroup method) clearSYBYLType() (samson.SBAtom method) clearTemperatureFactor() (samson.SBAtom method) clearTitleInformation() (samson.SBStructuralModel method) clearVisualModel() (samson.SBVisualPreset method) clearWaterFlag() (samson.SBAtom method) clippingPlane (samson.SBCamera property) clone() (samson.SBDynamicalModel method) (samson.SBNode method) (samson.SBNodeColorScheme method) (samson.SBNodeMaterial method) (samson.SBPalette method) (samson.SBVisualPreset method) (samson.SBVisualPresetGroup method) cm (class in samson.SBQuantity) Cm (samson.SBElement attribute) (samson.SBElement.ElementType attribute) cm (samson.SBQuantity.unitsSI property) cmol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Cn (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Co (samson.SBElement attribute) (samson.SBElement.ElementType attribute) CoarseGrained (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Cobalt (samson.SBElement attribute) (samson.SBElement.ElementType attribute) collapseToLowerBound() (samson.SBPhysicalIAVector3 method) collapseToUpperBound() (samson.SBPhysicalIAVector3 method) colorCPK (samson.SBElement property) ColorPalette (samson.SBClass attribute) (samson.SBClass.Type attribute) ColorScheme (samson.SBClass attribute) (samson.SBClass.Type attribute) colorSchemeClassName (samson.SBVisualPreset property) colorSchemeExtensionUUID (samson.SBVisualPreset property) comment (samson.SBStructuralGroup property) computeAminoAcidChi1Angle() (samson.SBResidue method) computeAminoAcidChi2Angle() (samson.SBResidue method) computeAminoAcidChi3Angle() (samson.SBResidue method) computeAminoAcidChi4Angle() (samson.SBResidue method) computeAminoAcidChi5Angle() (samson.SBResidue method) computeAminoAcidPhiAngle() (samson.SBResidue method) computeAminoAcidPsiAngle() (samson.SBResidue method) computeAngle() (samson.SBPhysicalVector3 static method) computeDihedralAngle() (samson.SBPhysicalVector3 static method) computeDomain() (samson.SBStructuralModel static method) computeEulerDecompositionZYZ() (samson.SBPhysicalMatrix33 method) computeNucleicAcidAlphaAngle() (samson.SBResidue method) computeNucleicAcidBetaAngle() (samson.SBResidue method) computeNucleicAcidChiAngle() (samson.SBResidue method) computeNucleicAcidDeltaAngle() (samson.SBResidue method) computeNucleicAcidEpsilonAngle() (samson.SBResidue method) computeNucleicAcidGammaAngle() (samson.SBResidue method) computeNucleicAcidZetaAngle() (samson.SBResidue method) computeSecondaryStructure() (samson.SBStructuralModel method) Conformation (samson.SBNode attribute) (samson.SBNode.Type attribute) connectivityAnnotationInformation (samson.SBStructuralModel property) constantAtomRadiusFlag (samson.SBRenderPreset property) ContainedInViewport (samson.SBRenderPreset attribute) (samson.SBRenderPreset.BackgroundImageMode attribute) contains() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) Controller (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) ControllerFactory (samson.SBClass attribute) (samson.SBClass.Type attribute) ControllerNode (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) Copernicium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Copper (samson.SBElement attribute) (samson.SBElement.ElementType attribute) copy() (samson.SBPath method) copyAppearanceFromMaterial() (samson.SBNodeMaterial method) correctDistanceWithPBC() (samson.SBParticleSystem method) cos() (in module samson.SBQuantity) cosphi() (samson.SBPhysicalMatrix33 method) coulomb (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) coulombConstant (samson.SBConstant attribute) coulombPerMeter (class in samson.SBQuantity) coulombPerSquareMeter (class in samson.SBQuantity) countNodes() (in module samson.SAMSON) (samson.SBNode method) covalentRadius (samson.SBAtom property) (samson.SBElement property) CoveringViewport (samson.SBRenderPreset attribute) (samson.SBRenderPreset.BackgroundImageMode attribute) CPerM (class in samson.SBQuantity) CPerM2 (class in samson.SBQuantity) Cr (samson.SBElement attribute) (samson.SBElement.ElementType attribute) create() (samson.SBNode method) createBond() (samson.SBStructuralModel static method) createColorScheme() (samson.SBVisualPreset static method) createConformation() (samson.SBPath method) createConformations() (samson.SBPath method) createCovalentBonds() (samson.SBStructuralModel method) createCovalentBondsByResidueType() (samson.SBResidue method) (samson.SBStructuralModel method) createGroup() (samson.SBDocument method) createMesh() (samson.SBVisualModel method) createRenderPreset() (in module samson.SAMSON) createStructuralModels() (samson.SBConformation method) (samson.SBPath method) crystallographicAndTransformationInformation (samson.SBStructuralModel property) cs (class in samson.SBQuantity) Cs (samson.SBElement attribute) (samson.SBElement.ElementType attribute) cs (samson.SBQuantity.unitsSI property) Cu (samson.SBElement attribute) (samson.SBElement.ElementType attribute) cubicAm (class in samson.SBQuantity) cubicAngstrom (class in samson.SBQuantity) cubicAttometer (class in samson.SBQuantity) cubicCentimeter (class in samson.SBQuantity) cubicCm (class in samson.SBQuantity) cubicDam (class in samson.SBQuantity) cubicDecameter (class in samson.SBQuantity) cubicDecimeter (class in samson.SBQuantity) cubicDistance (class in samson.SBQuantity) cubicDm (class in samson.SBQuantity) cubicFemtometer (class in samson.SBQuantity) cubicFm (class in samson.SBQuantity) cubicHectometer (class in samson.SBQuantity) cubicHm (class in samson.SBQuantity) cubicKilometer (class in samson.SBQuantity) cubicKm (class in samson.SBQuantity) cubicLength (class in samson.SBQuantity) cubicM (class in samson.SBQuantity) cubicMeter (class in samson.SBQuantity) cubicMicrometer (class in samson.SBQuantity) cubicMillimeter (class in samson.SBQuantity) cubicMm (class in samson.SBQuantity) cubicNanometer (class in samson.SBQuantity) cubicNm (class in samson.SBQuantity) cubicPicometer (class in samson.SBQuantity) cubicPm (class in samson.SBQuantity) cubicUm (class in samson.SBQuantity) cubicYm (class in samson.SBQuantity) cubicYoctometer (class in samson.SBQuantity) cubicZeptometer (class in samson.SBQuantity) cubicZm (class in samson.SBQuantity) Curium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) currentDateTimeUTC() (samson.SBDateTime static method) currentEnergy (samson.SBPath property) currentFrame (samson.SBPresentation property) currentStep (samson.SBPath property) currentTime (samson.SBPath property) currentValence (samson.SBAtom property) Custom (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBPalette attribute) (samson.SBPalette.PaletteType attribute) (samson.SBRenderPreset attribute) (samson.SBRenderPreset.AntiAliasingPreset attribute) (samson.SBRenderPreset.BackgroundType attribute) (samson.SBRenderPreset.LightingPreset attribute) (samson.SBRenderPreset.ShadowPreset attribute) customType (samson.SBAtom property) (samson.SBBond property) cyan (samson.SBColor attribute) cylindricalCIELabfromCIELab() (samson.SBColor static method) cylindricalCIELabfromSRGB() (samson.SBColor static method) cylindricalCIELuvfromCIELuv() (samson.SBColor static method) cylindricalCIELuvfromSRGB() (samson.SBColor static method) CYS (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) D Da (class in samson.SBQuantity) dA (class in samson.SBQuantity) Da (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsDalton property) (samson.SBQuantity.unitsSI property) dA (samson.SBQuantity.unitsSI property) DA (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) daA (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) dacd (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) dag (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) daK (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) dalton (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsDalton property) (samson.SBQuantity.unitsSI property) dam (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) damol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) darkenSRGBColor() (samson.SBColor static method) Darmstadtium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) DataGraphNodeGroup (samson.SBNode attribute) (samson.SBNode.Type attribute) Db (samson.SBElement attribute) (samson.SBElement.ElementType attribute) DC (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) dcd (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) decaampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) decacandela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) decagram (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) decakelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) decameter (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) decamole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) deciampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) decicandela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) decigram (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) decikelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) decimeter (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) decimole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) decisecond (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Default (samson.SBRenderPreset attribute) (samson.SBRenderPreset.BackgroundType attribute) (samson.SBRenderPreset.LightingPreset attribute) defaultAmbientLight (samson.SBRenderPreset property) defaultAtomRadiusRatioToVanDerWaalsRadius (samson.SBRenderPreset property) defaultBloomRadius (samson.SBRenderPreset property) defaultBloomStrength (samson.SBRenderPreset property) defaultBloomThreshold (samson.SBRenderPreset property) defaultDepthOfFieldStrength (samson.SBRenderPreset property) defaultFirstLightIntensity (samson.SBRenderPreset property) defaultFirstLightLatitude (samson.SBRenderPreset property) defaultFirstLightLongitude (samson.SBRenderPreset property) defaultFirstLightSpecularIntensity (samson.SBRenderPreset property) defaultFirstLightSpecularPower (samson.SBRenderPreset property) defaultFogStrength (samson.SBRenderPreset property) defaultFresnelIntensity (samson.SBRenderPreset property) defaultFresnelPower (samson.SBRenderPreset property) defaultGridTransparency (samson.SBRenderPreset property) defaultKeyframeColor (samson.SBColor attribute) defaultOpacity (samson.SBNode property) defaultOSAOGridSize (samson.SBRenderPreset property) defaultOSAOStrength (samson.SBRenderPreset property) defaultPinholeSharpness (samson.SBRenderPreset property) defaultScalePasses (samson.SBRenderPreset property) defaultScaleThickness (samson.SBRenderPreset property) defaultSecondLightIntensity (samson.SBRenderPreset property) defaultSecondLightLatitude (samson.SBRenderPreset property) defaultSecondLightLongitude (samson.SBRenderPreset property) defaultSecondLightSpecularIntensity (samson.SBRenderPreset property) defaultSecondLightSpecularPower (samson.SBRenderPreset property) defaultShadowMultisamplingFactor (samson.SBRenderPreset property) defaultShadowResolution (samson.SBRenderPreset property) defaultShadowSpread (samson.SBRenderPreset property) defaultShadowTransparency (samson.SBRenderPreset property) defaultSilhouetteThickness (samson.SBRenderPreset property) defaultSilhouetteTransparency (samson.SBRenderPreset property) defaultSSAOKernelSize (samson.SBRenderPreset property) defaultSSAORadius (samson.SBRenderPreset property) defaultSSAORandomization (samson.SBRenderPreset property) defaultSSAOStrength (samson.SBRenderPreset property) defaultTransparency (samson.SBNode property) defaultView() (samson.SBCamera method) deg (class in samson.SBQuantity) degPerS (class in samson.SBQuantity) degree (class in samson.SBQuantity) degreePerSecond (class in samson.SBQuantity) DegToRad (samson.SBConstant attribute) deleteVisualPreset() (samson.SBVisualPresetGroup method) depthOfFieldFlag (samson.SBCamera property) (samson.SBRenderPreset property) depthOfFieldStrength (samson.SBRenderPreset property) descendsFrom() (samson.SBNode method) description (samson.SBAttribute property) (samson.SBProxy property) det() (samson.SBPhysicalMatrix33 method) Developer (samson.SBClass attribute) (samson.SBClass.Category attribute) dg (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) DG (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) DI (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) diagonalize() (samson.SBPhysicalMatrix33 method) diameter() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) diffuseColorReplacement (samson.SBMesh property) dimensionless (class in samson.SBQuantity) disableHolding() (in module samson.SAMSON) dissociationConstant1 (samson.SBResidue property) dissociationConstant2 (samson.SBResidue property) distance (class in samson.SBQuantity) distance2ToPoint() (samson.SBPhysicalIAVector3 method) Diverging (samson.SBPalette attribute) (samson.SBPalette.PaletteType attribute) divergingHCLBerlin (samson.SBPaletteDefaultPalette attribute) divergingHCLBlue2Red (samson.SBPaletteDefaultPalette attribute) divergingHCLBlue2Red2 (samson.SBPaletteDefaultPalette attribute) divergingHCLBlue2Red3 (samson.SBPaletteDefaultPalette attribute) dK (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) dm (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) dmol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Document (samson.SBNode attribute) (samson.SBNode.Type attribute) DocumentManager (samson.SBNode attribute) (samson.SBNode.Type attribute) Dodecahedral (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) Double (samson.SBBond attribute) (samson.SBBond.BondType attribute) doubleSymmetricPart() (samson.SBPhysicalMatrix66 method) drawOnTop (samson.SBLabel property) drawOutline (samson.SBLabel property) ds (class in samson.SBQuantity) Ds (samson.SBElement attribute) (samson.SBElement.ElementType attribute) ds (samson.SBQuantity.unitsSI property) DT (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) Dubnium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Dummy (samson.SBBond attribute) (samson.SBBond.BondType attribute) Dy (samson.SBElement attribute) (samson.SBElement.ElementType attribute) DynamicalGroup (samson.SBNode attribute) (samson.SBNode.Type attribute) DynamicalModel (samson.SBNode attribute) (samson.SBNode.Type attribute) DynamicalModelArticulatedBodySystem (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) DynamicalModelNode (samson.SBNode attribute) (samson.SBNode.Type attribute) DynamicalModelNodeArticulatedBody (samson.SBNode attribute) (samson.SBNode.Type attribute) DynamicalModelNodeGroup (samson.SBNode attribute) (samson.SBNode.Type attribute) DynamicalModelNodeParticle (samson.SBNode attribute) (samson.SBNode.Type attribute) DynamicalModelNodeRigidBody (samson.SBNode attribute) (samson.SBNode.Type attribute) DynamicalModelNodeRoot (samson.SBNode attribute) (samson.SBNode.Type attribute) DynamicalModelParticleSystem (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) DynamicalModelParticleSystemFactory (samson.SBClass attribute) (samson.SBClass.Type attribute) DynamicalModelRigidBodySystem (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) dynamicalModelType (samson.SBDynamicalModel property) DynamicalNode (samson.SBNode attribute) (samson.SBNode.Type attribute) DynamicalRoot (samson.SBNode attribute) (samson.SBNode.Type attribute) Dysprosium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) E e (class in samson.SBQuantity) ec (class in samson.SBQuantity) Editor (samson.SBClass attribute) (samson.SBClass.Type attribute) Education (samson.SBClass attribute) (samson.SBClass.Category attribute) Eh (class in samson.SBQuantity) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsKilocaloriePerMole property) (samson.SBQuantity.unitsSI property) Einsteinium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) electricCharge (class in samson.SBQuantity) electricField (class in samson.SBQuantity) electronCharge (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) electronDensity (class in samson.SBQuantity) electronegativity (samson.SBAtom property) (samson.SBElement property) Electronics (samson.SBClass attribute) (samson.SBClass.Category attribute) electronMass (class in samson.SBQuantity) (samson.SBConstant attribute) (samson.SBQuantity.unitsDalton property) (samson.SBQuantity.unitsSI property) electronvolt (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsKilocaloriePerMole property) (samson.SBQuantity.unitsSI property) element (samson.SBProxy property) elementName (samson.SBAtom property) elementSymbol (samson.SBAtom property) elementType (samson.SBAtom property) elementUUID (samson.SBProxy property) emissionStrength (samson.SBNodeMaterial property) enableHolding() (in module samson.SAMSON) endFrame (samson.SBPresentation property) endHolding() (in module samson.SAMSON) endKeyframe (samson.SBAnimation property) energy (class in samson.SBQuantity) (samson.SBInteractionModel property) energyPerSquareLength (class in samson.SBQuantity) enforcePeriodicBoundaryConditions() (samson.SBDynamicalModel method) Enterprise (samson.SBUserPlan attribute) (samson.SBUserPlan.Type attribute) Entrance (samson.SBAnimation attribute) (samson.SBAnimation.Category attribute) EntranceAnimation (samson.SBClass attribute) (samson.SBClass.Type attribute) Er (samson.SBElement attribute) (samson.SBElement.ElementType attribute) erase() (samson.SBNode method) Erbium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Es (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Eu (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Europium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) eV (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsKilocaloriePerMole property) (samson.SBQuantity.unitsSI property) executable (samson.SBFile property) Exit (samson.SBAnimation attribute) (samson.SBAnimation.Category attribute) exit() (in module samson.SAMSON) ExitAnimation (samson.SBClass attribute) (samson.SBClass.Type attribute) exp() (in module samson.SBQuantity) expand() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) expectedValence (samson.SBAtom property) Exporter (samson.SBClass attribute) (samson.SBClass.Type attribute) exportToFile() (in module samson.SAMSON) F F (class in samson.SBQuantity) (samson.SBElement attribute) (samson.SBElement.ElementType attribute) fA (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) fabs() (in module samson.SBQuantity) Factory (samson.SBClass attribute) (samson.SBClass.Type attribute) farad (class in samson.SBQuantity) farPlane (samson.SBCamera property) favoriteFlag (samson.SBAction property) fcd (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Fe (samson.SBElement attribute) (samson.SBElement.ElementType attribute) femtoampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) femtocandela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) femtogram (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) femtokelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) femtometer (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) femtomole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) femtosecond (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsSI property) fermi (class in samson.SBQuantity) Fermium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) fetchPDB() (in module samson.SAMSON) fg (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) fieldOfViewAngleY (samson.SBCamera property) File (samson.SBNode attribute) (samson.SBNode.Type attribute) fileName (samson.SBDocument property) findAtom() (samson.SBStructuralModel static method) firstLightIntensity (samson.SBRenderPreset property) firstLightLatitude (samson.SBRenderPreset property) firstLightLongitude (samson.SBRenderPreset property) firstLightSpecularIntensity (samson.SBRenderPreset property) firstLightSpecularPower (samson.SBRenderPreset property) fit() (samson.SBPhysicalIAVector3 method) fixedFlag (samson.SBAtom property) fK (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Fl (samson.SBElement attribute) (samson.SBElement.ElementType attribute) FlatLight (samson.SBRenderPreset attribute) (samson.SBRenderPreset.LightingPreset attribute) Flerovium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) FlexibleDiverging (samson.SBPalette attribute) (samson.SBPalette.PaletteType attribute) flexibleDivergingHCLArmyRose (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLBrBG (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLCividis (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLEarth (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLFall (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLGeyser (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLPiYG (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLPRGn (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLPuOr (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLRdBu (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLRdGy (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLRdYlBu (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLRdYlGn (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLRoma (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLSpectral (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLTealRose (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLTemps (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLTropic (samson.SBPaletteDefaultPalette attribute) flexibleDivergingHCLZissou1 (samson.SBPaletteDefaultPalette attribute) floor() (in module samson.SBQuantity) Fluorine (samson.SBElement attribute) (samson.SBElement.ElementType attribute) flushForceBuffer() (samson.SBInteractionModel method) flushMomentumBuffer() (samson.SBParticleSystem method) flushPositionBuffer() (samson.SBDynamicalModel method) fm (class in samson.SBQuantity) Fm (samson.SBElement attribute) (samson.SBElement.ElementType attribute) fm (samson.SBQuantity.unitsSI property) fmol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) fNumber (samson.SBCamera property) focalDistance (samson.SBCamera property) fogFlag (samson.SBRenderPreset property) fogStrength (samson.SBRenderPreset property) Folder (samson.SBNode attribute) (samson.SBNode.Type attribute) fontString (samson.SBLabel property) force (class in samson.SBQuantity) forcePerLength (class in samson.SBQuantity) formalCharge (samson.SBAtom property) forwardFlag (samson.SBPath property) Fr (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Francium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) fresnelIntensity (samson.SBRenderPreset property) fresnelPower (samson.SBRenderPreset property) fromAlignment() (samson.SBPhysicalMatrix33 static method) fromAxisAngle() (samson.SBPhysicalMatrix33 static method) fromAxisAnglePi() (samson.SBPhysicalMatrix33 static method) fromHCL() (samson.SBColor static method) fromHSV() (samson.SBColor static method) fromLinearInterpolation() (samson.SBQuantity.unitsAU static method) (samson.SBQuantity.unitsDalton static method) (samson.SBQuantity.unitsElectronvolt static method) (samson.SBQuantity.unitsKilocaloriePerMole static method) (samson.SBQuantity.unitsSI static method) fromQuaternion() (samson.SBPhysicalMatrix33 static method) frontView() (samson.SBCamera method) fs (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsSI property) FXAAFlag (samson.SBRenderPreset property) G g (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsDalton property) (samson.SBQuantity.unitsSI property) G (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) Ga (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Gadolinium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Gallium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Gd (samson.SBElement attribute) (samson.SBElement.ElementType attribute) GDa (class in samson.SBQuantity) gDa (samson.SBQuantity.unitsDalton property) Ge (samson.SBElement attribute) (samson.SBElement.ElementType attribute) General (samson.SBClass attribute) (samson.SBClass.Category attribute) geometry (samson.SBAtom property) geometryString (samson.SBAtom property) Germanium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) getAbsLower() (samson.SBPhysicalInterval method) getAbsUpper() (samson.SBPhysicalInterval method) getAction() (in module samson.SAMSON) getActionByText() (in module samson.SAMSON) getActiveCamera() (in module samson.SAMSON) (samson.SBDocument method) getActiveDocument() (in module samson.SAMSON) getActiveDocumentFilter() (in module samson.SAMSON) getActivePresentation() (samson.SBDocument method) getActiveSelectionFilterName() (in module samson.SAMSON) getActiveSelectionFilterNSL() (in module samson.SAMSON) getActiveStructuralModel() (in module samson.SAMSON) (samson.SBDocument method) getActivityFlag() (samson.SBParticleSystem method) getAlphaCarbon() (samson.SBBackbone method) getAminoAcidOneLetterCode() (samson.SBResidue static method) getAnimationIndexer() (samson.SBFolder method) getAnimationProxyMap() (in module samson.SAMSON) getAntiAliasingPresetString() (samson.SBRenderPreset method) getAppearancePresetList() (samson.SBNodeMaterial static method) getAsphericity() (samson.SBStructuralModel static method) getAssetIndexer() (samson.SBFolder method) getAtom() (in module samson.SAMSON) getAtomicWeight() (in module samson.SAMSON) (samson.SBElementTable static method) getAtomIndexer() (samson.SBConformation method) (samson.SBParticleSystem method) (samson.SBPath method) getAtomRadius() (in module samson.SAMSON) getAttribute() (samson.SBInterface method) getBackbone() (samson.SBAtom method) (samson.SBResidue method) getBackgroundBottomColor() (samson.SBRenderPreset method) getBackgroundImageModeString() (samson.SBRenderPreset method) getBackgroundTopColor() (samson.SBRenderPreset method) getBackgroundTypeString() (samson.SBRenderPreset method) getBetaCarbon() (samson.SBSideChain method) getBlock() (in module samson.SAMSON) (samson.SBElementTable static method) getBond() (in module samson.SAMSON) getBondedAtoms() (samson.SBAtom method) getBondedHeavyAtoms() (samson.SBAtom method) getBondList() (samson.SBAtom method) getBondRadius() (in module samson.SAMSON) (samson.SBRenderPreset method) getBondTo() (samson.SBAtom method) getBondTypeAsString() (samson.SBBond method) getBondTypeString() (samson.SBBond static method) getCameraControllerFlag() (in module samson.SAMSON) getCameraIndexer() (samson.SBFolder method) getCarbon() (samson.SBBackbone method) getCarbon1p() (samson.SBBackbone method) getCarbon3p() (samson.SBBackbone method) getCarbon4p() (samson.SBBackbone method) getCarbon5p() (samson.SBBackbone method) getCategoryString() (samson.SBAnimation static method) getCenterOfFormalCharge() (samson.SBStructuralModel static method) getCenterOfMass() (samson.SBStructuralModel static method) getCenterOfPartialCharge() (samson.SBStructuralModel static method) getCentroid() (samson.SBStructuralModel static method) getChain() (samson.SBAtom method) getChangedForceIndex() (samson.SBInteractionModel method) getChangedMomentumIndex() (samson.SBParticleSystem method) getChangedPositionIndex() (samson.SBDynamicalModel method) getChildren() (samson.SBFolder method) (samson.SBStructuralModel method) (samson.SBStructuralNode method) getChoiceFromUser() (in module samson.SAMSON) getClassCategoryString() (samson.SBClass method) getClassTypeString() (samson.SBClass method) getCoarseGrainedColor() (samson.SBAtom method) getCoarseGrainedMass() (samson.SBAtom method) getCoarseGrainedRadius() (samson.SBAtom method) getCoarseGrainedType() (samson.SBAtom method) getColor() (samson.SBAtom method) (samson.SBLight method) (samson.SBNodeColorScheme method) (samson.SBPalette method) (samson.SBVisualPreset method) getColorCPK() (samson.SBElement static method) getColorFromUser() (in module samson.SAMSON) getColorInPaletteColorSpace() (samson.SBPalette method) getColorScheme() (samson.SBNodeMaterial method) getColorSchemeProxy() (samson.SBVisualPreset method) getColorSchemeProxyMap() (in module samson.SAMSON) getColorVector() (samson.SBPalette method) getColumn() (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) getComment() (samson.SBAtom method) getConformationIndexer() (samson.SBFolder method) getConnectedComponent() (samson.SBAtom method) getConstantAtomRadius() (samson.SBRenderPreset method) getControllerIndexer() (samson.SBFolder method) getCovalentRadius() (in module samson.SAMSON) (samson.SBElement method) (samson.SBElementTable static method) getCreationDate() (samson.SBFile method) getDarkModeFlag() (in module samson.SAMSON) getDeepSelectionFlag() (in module samson.SAMSON) getDefaultBondRadius() (samson.SBRenderPreset method) getDefaultColorPaletteForCurrentColorScheme() (samson.SBVisualPreset method) getDefaultConstantAtomRadius() (samson.SBRenderPreset method) getDefaultDepthOfFieldDistance() (samson.SBRenderPreset method) getDefaultDiffuseColorReplacement() (samson.SBMesh method) getDefaultFirstLightColor() (samson.SBRenderPreset method) getDefaultFogFarDistance() (samson.SBRenderPreset method) getDefaultFogNearDistance() (samson.SBRenderPreset method) getDefaultGridRadius() (samson.SBRenderPreset method) getDefaultGridSpacing() (samson.SBRenderPreset method) getDefaultGridThickness() (samson.SBRenderPreset method) getDefaultMaximumValue() (samson.SBColorSchemePerAttribute_dimensionless method) (samson.SBColorSchemePerAttribute_double method) (samson.SBColorSchemePerAttribute_float method) (samson.SBColorSchemePerAttribute_int method) getDefaultMinimumValue() (samson.SBColorSchemePerAttribute_dimensionless method) (samson.SBColorSchemePerAttribute_double method) (samson.SBColorSchemePerAttribute_float method) (samson.SBColorSchemePerAttribute_int method) getDefaultPalette() (samson.SBNodeColorScheme method) getDefaultPower() (samson.SBLight method) getDefaultRadius() (samson.SBLight method) getDefaultScale() (samson.SBMesh method) getDefaultSecondLightColor() (samson.SBRenderPreset method) getDefaultShadowOffset() (samson.SBRenderPreset method) getDefaultSilhouetteColor() (samson.SBRenderPreset method) getDefaultSilhouetteDistanceThreshold() (samson.SBRenderPreset method) getDefaultVisualPresetGroups() (samson.SBVisualPresetGroup static method) getDegreesFromRadians() (samson.SBConstant static method) getDeltaAtom() (samson.SBSideChain method) getDepthOfFieldDistance() (samson.SBRenderPreset method) getDipoleMomentAtCenterOfCharge() (samson.SBStructuralModel static method) getDipoleMomentAtCenterOfMass() (samson.SBStructuralModel static method) getDipoleVectorAtCenterOfCharge() (samson.SBStructuralModel static method) getDipoleVectorAtCenterOfMass() (samson.SBStructuralModel static method) getDisplacement() (samson.SBBond method) getDissociationConstant1() (samson.SBResidue static method) getDissociationConstant2() (samson.SBResidue static method) getDocument() (samson.SBNode method) getDoubleFromUser() (in module samson.SAMSON) getDoubleIntervalFromUser() (in module samson.SAMSON) getDynamicalModel() (samson.SBSimulatorParticleSystem method) (samson.SBStateUpdater method) getDynamicalModelIndexer() (samson.SBFolder method) getDynamicalRoot() (samson.SBDynamicalModel method) getE1() (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBSpatialTransform method) getE2() (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBSpatialTransform method) getE3() (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBSpatialTransform method) getE4() (samson.SBPhysicalMatrix66 method) (samson.SBSpatialTransform method) getE5() (samson.SBPhysicalMatrix66 method) (samson.SBSpatialTransform method) getE6() (samson.SBPhysicalMatrix66 method) getElectronegativity() (in module samson.SAMSON) (samson.SBElementTable static method) getElement() (samson.SBElementTable static method) getElementFromUser() (in module samson.SAMSON) getElementName() (in module samson.SAMSON) (samson.SBElementTable static method) getElementsFromUser() (in module samson.SAMSON) getElementSymbol() (in module samson.SAMSON) (samson.SBElementTable static method) getElementTypeByName() (in module samson.SAMSON) (samson.SBElementTable static method) getElementTypeBySymbol() (in module samson.SAMSON) (samson.SBElementTable static method) getEmissionColor() (samson.SBNodeMaterial method) getEnergy() (samson.SBConformation method) (samson.SBPath method) getEnergyData() (samson.SBPath method) getEpsilonAtom() (samson.SBSideChain method) getEtaAtom() (samson.SBSideChain method) getEyeDestination() (samson.SBCamera method) getEyePosition() (samson.SBCamera method) getEyeVelocity() (samson.SBCamera method) getFileIndexer() (samson.SBFolder method) getFileNameFromUser() (in module samson.SAMSON) getFileNamesFromUser() (in module samson.SAMSON) getFirstLightColor() (samson.SBRenderPreset method) getFlags() (samson.SBNode method) getFogFarDistance() (samson.SBRenderPreset method) getFogNearDistance() (samson.SBRenderPreset method) getFolderIndexer() (samson.SBFolder method) getForce() (samson.SBConformation method) (samson.SBInteractionModelParticleSystem method) (samson.SBPath method) getForceChanged() (samson.SBInteractionModel method) getForceData() (samson.SBConformation method) (samson.SBPath method) getFrustumPositionFromWorldPosition() (samson.SBCamera method) getGammaAtom() (samson.SBSideChain method) getGeometryString() (samson.SBAtom static method) getGridFlag() (in module samson.SAMSON) getGridRadius() (samson.SBRenderPreset method) getGridSpacing() (samson.SBRenderPreset method) getGridThickness() (samson.SBRenderPreset method) getGroup() (in module samson.SAMSON) (samson.SBElementTable static method) getGroupNodes() (samson.SBNodeGroup method) getHeadPosition() (samson.SBCamera method) getHierarchyString() (samson.SBNode method) getHybridizationString() (samson.SBAtom static method) getHydrogens() (samson.SBAtom method) getHydrophobicity() (samson.SBResidue method) getHydrophobicityForResidueType() (samson.SBResidue static method) getHydrophobicityScaleString() (samson.SBResidue static method) getIndex() (samson.SBNodeIndexer method) getInertiaTensor() (samson.SBStructuralModel static method) getInheritedFlags() (samson.SBNode method) getIntegerFromUser() (in module samson.SAMSON) getIntegerIntervalFromUser() (in module samson.SAMSON) getInteractionModel() (samson.SBSimulatorParticleSystem method) (samson.SBStateUpdater method) getInteractionModelIndexer() (samson.SBFolder method) getInterface() (samson.SBProxy method) getInverseMass() (samson.SBParticleSystem method) getIsoelectricPointPH() (samson.SBResidue static method) getItemFromUser() (in module samson.SAMSON) getKeyframeIndex() (samson.SBAnimation method) getLabelIndexer() (samson.SBFolder method) getLastAccessDate() (samson.SBFile method) getLastModificationDate() (samson.SBFile method) getLength() (samson.SBBond method) getLightingPresetString() (samson.SBRenderPreset method) getLikeFromUser() (in module samson.SAMSON) getMass() (samson.SBParticleSystem method) getMaterial() (samson.SBNode method) getMaterialOwner() (samson.SBNode method) getMaximum3DTextureSize() (in module samson.SAMSON) getMaximumDiffuseColorReplacement() (samson.SBMesh method) getMaximumPower() (samson.SBLight method) getMaximumRadius() (samson.SBLight method) getMaximumRectangleTextureSize() (in module samson.SAMSON) getMaximumTextureSize() (in module samson.SAMSON) getMaximumValue() (samson.SBColorSchemePerAttribute_dimensionless method) (samson.SBColorSchemePerAttribute_double method) (samson.SBColorSchemePerAttribute_float method) (samson.SBColorSchemePerAttribute_int method) getMemoryFootprint() (samson.SBReferenceTarget method) getMidPoint() (samson.SBBond method) getMinimumDiffuseColorReplacement() (samson.SBMesh method) getMinimumPower() (samson.SBLight method) getMinimumRadius() (samson.SBLight method) getMinimumValue() (samson.SBColorSchemePerAttribute_dimensionless method) (samson.SBColorSchemePerAttribute_double method) (samson.SBColorSchemePerAttribute_float method) (samson.SBColorSchemePerAttribute_int method) getModel() (samson.SBStructuralNode method) getModelIndexer() (samson.SBFolder method) getMolecularWeightForNodeIndexer() (samson.SBStructuralModel static method) getMolecule() (samson.SBAtom method) getMomentum() (samson.SBParticleSystem method) getMousePositionInViewport() (in module samson.SAMSON) getMultipleBondDisplayFlag() (in module samson.SAMSON) getMultiSampleFactor() (in module samson.SAMSON) getNeighbors() (samson.SBNeighborSearchParticleSystem method) (samson.SBNeighborSearchParticleSystemPBC method) (samson.SBStructuralModelGrid method) getNeighborVector() (samson.SBNeighborSearchParticleSystem method) (samson.SBNeighborSearchParticleSystemPBC method) (samson.SBStructuralModelGrid method) getNextAminoAcid() (samson.SBResidue method) getNextAnimation() (samson.SBAnimation method) getNextAsset() (samson.SBAsset method) getNextCamera() (samson.SBCamera method) getNextConformation() (samson.SBConformation method) getNextDocument() (samson.SBDocument method) getNextFile() (samson.SBFile method) getNextFolder() (samson.SBFolder method) getNextGroup() (samson.SBNodeGroup method) getNextLabel() (samson.SBLabel method) getNextLight() (samson.SBLight method) getNextMesh() (samson.SBMesh method) getNextModel() (samson.SBModel method) getNextNode() (samson.SBNode method) getNextNodeName() (in module samson.SAMSON) getNextNote() (samson.SBNote method) getNextNucleicAcid() (samson.SBResidue method) getNextPath() (samson.SBPath method) getNextPresentation() (samson.SBPresentation method) getNextRenderPreset() (samson.SBRenderPreset method) getNextResidue() (samson.SBResidue method) getNextSimulator() (samson.SBSimulator method) getNextStructuralNode() (samson.SBStructuralNode method) getNitrogen() (samson.SBBackbone method) getNode() (in module samson.SAMSON) (samson.SBNode static method) (samson.SBNodeIndexer method) (samson.SBNodeMaterial method) getNodeGroupIndexer() (samson.SBFolder method) getNodes() (in module samson.SAMSON) (samson.SBNode method) (samson.SBNodeIndexer method) (samson.SBNodeSelector method) getNoteIndexer() (samson.SBFolder method) getNumberOfBondedAtoms() (samson.SBAtom method) getNumberOfBondedCarbons() (samson.SBAtom method) getNumberOfBondedHeavyAtoms() (samson.SBAtom method) getNumberOfBondedHydrogens() (samson.SBAtom method) getNumberOfBondedNitrogens() (samson.SBAtom method) getNumberOfBondedOxygens() (samson.SBAtom method) getNumberOfBondedSulfurs() (samson.SBAtom method) getNumberOfBonds() (samson.SBAtom method) getNumberOfChangedPositions() (samson.SBDynamicalModel method) getNumberOfElements() (in module samson.SAMSON) getNumberOfSelectedNodes() (samson.SBDocument method) getOppositeAtom() (samson.SBBond method) getOrientation() (samson.SBMesh method) (samson.SBSpatialTransform method) (samson.SBStructuralModel method) getOxygen() (samson.SBBackbone method) getOxygen3p() (samson.SBBackbone method) getOxygen4p() (samson.SBBackbone method) getOxygen5p() (samson.SBBackbone method) getPalette() (samson.SBNodeColorScheme method) (samson.SBVisualPreset method) getPaletteFromUser() (in module samson.SAMSON) getParent() (samson.SBNode method) getParticleSystem() (samson.SBInteractionModelParticleSystem method) getPathFromUser() (in module samson.SAMSON) getPathIndexer() (samson.SBFolder method) getPeriod() (in module samson.SAMSON) (samson.SBElementTable static method) getPeriodicBoundaryConditions() (samson.SBDynamicalModel method) getPhosphorus() (samson.SBBackbone method) getPosition() (samson.SBAtom method) (samson.SBConformation method) (samson.SBLabel method) (samson.SBLight method) (samson.SBMesh method) (samson.SBParticleSystem method) (samson.SBPath method) (samson.SBSpatialTransform method) (samson.SBStructuralModel method) getPositionChanged() (samson.SBDynamicalModel method) (samson.SBParticleSystem method) getPositionData() (samson.SBConformation method) (samson.SBPath method) getPower() (samson.SBLight method) getPresentationIndexer() (samson.SBFolder method) getPreviousAminoAcid() (samson.SBResidue method) getPreviousAnimation() (samson.SBAnimation method) getPreviousAsset() (samson.SBAsset method) getPreviousCamera() (samson.SBCamera method) getPreviousConformation() (samson.SBConformation method) getPreviousDocument() (samson.SBDocument method) getPreviousFile() (samson.SBFile method) getPreviousFolder() (samson.SBFolder method) getPreviousGroup() (samson.SBNodeGroup method) getPreviousLabel() (samson.SBLabel method) getPreviousLight() (samson.SBLight method) getPreviousMesh() (samson.SBMesh method) getPreviousModel() (samson.SBModel method) getPreviousNode() (samson.SBNode method) getPreviousNote() (samson.SBNote method) getPreviousNucleicAcid() (samson.SBResidue method) getPreviousPath() (samson.SBPath method) getPreviousPresentation() (samson.SBPresentation method) getPreviousRenderPreset() (samson.SBRenderPreset method) getPreviousResidue() (samson.SBResidue method) getPreviousSimulator() (samson.SBSimulator method) getPreviousStructuralNode() (samson.SBStructuralNode method) getPrincipalAxes() (samson.SBStructuralModel static method) getProjectionMatrix() (samson.SBCamera method) getProjectionMatrixTranspose() (samson.SBCamera method) getPromptFromUser() (in module samson.SAMSON) getPropertyModelIndexer() (samson.SBFolder method) getProxy() (in module samson.SAMSON) getProxyIndexer() (in module samson.SAMSON) getPublicName() (in module samson.SAMSON) getPublicVersionNumber() (in module samson.SAMSON) getRadius() (samson.SBLight method) getRadiusOfGyration() (samson.SBStructuralModel static method) getRecordType() (samson.SBAtom method) getRenderPresetIndexer() (samson.SBFolder method) getReplyFromUser() (in module samson.SAMSON) getResidue() (samson.SBAtom method) getResidueTypeFromAminoAcidOneLetterCode() (samson.SBResidue static method) getResidueTypeFromString() (samson.SBResidue static method) getResidueTypeFullName() (samson.SBResidue static method) getResidueTypeString() (samson.SBResidue static method) getRoot() (samson.SBNode method) getRootNodes() (samson.SBNodeIndexer method) getRotationVelocity() (samson.SBCamera method) getRow() (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) getSAMSONElementsPath() (in module samson.SAMSON) getSAMSONPath() (in module samson.SAMSON) getSaveFileNameFromUser() (in module samson.SAMSON) getScale() (samson.SBMesh method) (samson.SBSpatialTransform method) getScaleFlag() (in module samson.SAMSON) getScratchPath() (in module samson.SAMSON) getSecondaryStructureTypeString() (samson.SBResidue method) getSecondLightColor() (samson.SBRenderPreset method) getSegment() (samson.SBAtom method) getSelectedNodes() (samson.SBDocument method) getSelectorProxy() (samson.SBVisualPreset method) getSelectorProxyMap() (in module samson.SAMSON) getShadowOffset() (samson.SBRenderPreset method) getShadowPresetString() (samson.SBRenderPreset method) getShapeParameter() (samson.SBStructuralModel static method) getSideChain() (samson.SBAtom method) (samson.SBResidue method) getSideChainCharge() (samson.SBResidue static method) getSideChainChargeString() (samson.SBResidue static method) getSideChainPolarity() (samson.SBResidue static method) getSideChainPolarityString() (samson.SBResidue static method) getSilhouetteColor() (samson.SBRenderPreset method) getSilhouetteDistanceThreshold() (samson.SBRenderPreset method) getSimulationFlag() (in module samson.SAMSON) getSimulatorIndexer() (samson.SBFolder method) getSimulatorList() (samson.SBInteractionModel method) getSize() (samson.SBFile method) getSizeString() (samson.SBFile method) getSolventAccessibleSurfaceArea() (samson.SBStructuralModel static method) getSpatialTransform() (samson.SBStructuralModel static method) getStateUpdater() (samson.SBSimulator method) (samson.SBSimulatorParticleSystem method) getStatusBit() (samson.SBAtom method) getStringFromUser() (in module samson.SAMSON) getStructuralModelIndexer() (samson.SBFolder method) getStructuralRoot() (samson.SBStructuralModel method) getSubstructure() (samson.SBAtom method) getSubsurfaceColor() (samson.SBNodeMaterial method) getSubsurfaceRadius() (samson.SBNodeMaterial method) getSumOfFormalCharges() (samson.SBStructuralModel static method) getSumOfPartialCharges() (samson.SBStructuralModel static method) getSYBYLType() (samson.SBAtom method) getTargetDestination() (samson.SBCamera method) getTargetPosition() (samson.SBCamera method) getTargetVelocity() (samson.SBCamera method) getText() (samson.SBFile method) getThisNode() (samson.SBNode method) getTime() (in module samson.SAMSON) (samson.SBConformation method) (samson.SBPath method) getTimeData() (samson.SBPath method) getTransform (samson.SBCamera property) getTransform() (samson.SBMesh method) (samson.SBStructuralModel method) getTypeString() (samson.SBNode static method) getUpVector() (samson.SBCamera method) getUpVectorDestination() (samson.SBCamera method) getUserDataPath() (in module samson.SAMSON) getUserPlan() (in module samson.SAMSON) getUserPlanString() (in module samson.SAMSON) getValueAlongLinearTrajectory() (samson.SBPalette static method) getValueAlongTriangularTrajectory() (samson.SBPalette static method) getVanDerWaalsAtomRadiusFlag() (in module samson.SAMSON) getVanDerWaalsAtomRadiusRatio() (in module samson.SAMSON) getVanDerWaalsRadius() (in module samson.SAMSON) (samson.SBElementTable static method) getVelocity() (samson.SBConformation method) (samson.SBPath method) getVelocityData() (samson.SBConformation method) (samson.SBPath method) getVersionNumber() (in module samson.SAMSON) getViewMatrix() (samson.SBCamera method) getViewMatrixTranspose() (samson.SBCamera method) getViewportHeight() (in module samson.SAMSON) getViewportOffset() (samson.SBLabel method) getViewportPixelRatio() (in module samson.SAMSON) getViewportPositionFromWorldPosition() (in module samson.SAMSON) getViewportWidth() (in module samson.SAMSON) getViewProjectionMatrix() (samson.SBCamera method) getViewProjectionMatrixTranspose() (samson.SBCamera method) getViewProjectionMatrixTransposeInverse() (samson.SBCamera method) getVisualModelIndexer() (samson.SBFolder method) getVisualModelProxy() (samson.SBVisualPreset method) getVisualModelProxyMap() (in module samson.SAMSON) getWater() (samson.SBStructuralModel method) getWaterFromNodeIndexer() (samson.SBStructuralModel static method) getWorldPositionFromFrustumPosition() (samson.SBCamera method) getX() (samson.SBAtom method) getY() (samson.SBAtom method) getZ() (samson.SBAtom method) getZetaAtom() (samson.SBSideChain method) GHz (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) gigadalton (class in samson.SBQuantity) (samson.SBQuantity.unitsDalton property) gigahertz (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) gigatesla (class in samson.SBQuantity) GLN (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) globalXAxis (samson.SBColor attribute) globalYAxis (samson.SBColor attribute) globalZAxis (samson.SBColor attribute) GLU (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) GLX (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) GLY (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) Gold (samson.SBElement attribute) (samson.SBElement.ElementType attribute) gram (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsDalton property) (samson.SBQuantity.unitsSI property) gray (class in samson.SBQuantity) green (samson.SBColor attribute) greenInt (samson.SBColor property) gridFlag (samson.SBRenderPreset property) gridTransparency (samson.SBRenderPreset property) group (samson.SBAtom property) (samson.SBAttribute property) (samson.SBElement property) groupSelection() (samson.SBDocument method) GT (class in samson.SBQuantity) GUIShortcut (samson.SBProxy property) GUIUUID (samson.SBProxy property) Gy (class in samson.SBQuantity) H H (class in samson.SBQuantity) (samson.SBElement attribute) (samson.SBElement.ElementType attribute) hA (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Hafnium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) hartree (class in samson.SBQuantity) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsKilocaloriePerMole property) (samson.SBQuantity.unitsSI property) hasAltLocation (samson.SBAtom property) hasAminoAcidBackboneAtomName (samson.SBAtom property) hasAminoAcidChi1Angle() (samson.SBResidue method) hasAminoAcidChi1AngleForResidueType() (samson.SBResidue static method) hasAminoAcidChi2Angle() (samson.SBResidue method) hasAminoAcidChi2AngleForResidueType() (samson.SBResidue static method) hasAminoAcidChi3Angle() (samson.SBResidue method) hasAminoAcidChi3AngleForResidueType() (samson.SBResidue static method) hasAminoAcidChi4Angle() (samson.SBResidue method) hasAminoAcidChi4AngleForResidueType() (samson.SBResidue static method) hasAminoAcidChi5Angle() (samson.SBResidue method) hasAminoAcidChi5AngleForResidueType() (samson.SBResidue static method) hasAnisotropicTFactors (samson.SBAtom property) hasAppearancePreset() (samson.SBNodeMaterial static method) hasAromaticity (samson.SBAtom property) hasChainID (samson.SBAtom property) hasColor (samson.SBVisualPreset property) hasColorScheme (samson.SBVisualPreset property) hasComment (samson.SBAtom property) (samson.SBStructuralGroup property) hasCompleteAminoAcidBackbone (samson.SBResidue property) hasConnectivityAnnotationInformation (samson.SBStructuralModel property) hasCrystallographicAndTransformationInformation (samson.SBStructuralModel property) hasCustomType (samson.SBAtom property) (samson.SBBond property) hasDefaultPalette (samson.SBVisualPreset property) hasDiffuseColorReplacementRange() (samson.SBMesh method) hasDissociationConstant (samson.SBResidue property) hasDissociationConstantForResidueType() (samson.SBResidue static method) hasFormalCharge (samson.SBAtom property) hasGeometry (samson.SBAtom property) hasHeterogenInformation (samson.SBStructuralModel property) hasHybridization (samson.SBAtom property) hasHydrophobicity (samson.SBResidue property) hasHydrophobicityForResidueType() (samson.SBResidue static method) hasIndex() (samson.SBNodeIndexer method) hasInsertionCode (samson.SBAtom property) hasKeyframe() (samson.SBAnimation method) hasKeyframes() (samson.SBAnimation method) hasMaterial (samson.SBNode property) hasMiscellaneousInformation (samson.SBStructuralModel property) hasName (samson.SBAtom property) hasNode() (in module samson.SAMSON) (samson.SBNode method) (samson.SBNodeIndexer method) hasNucleicAcidBackboneAtomName (samson.SBAtom property) hasOccupancy (samson.SBAtom property) hasOneOf() (samson.SBNode method) hasOpacityRange (samson.SBNode property) hasOxidationState (samson.SBAtom property) hasOxidationState() (samson.SBElement method) (samson.SBElementTable static method) hasPalette (samson.SBNodeColorScheme property) hasPartialCharge (samson.SBAtom property) hasPrimaryStructureInformation (samson.SBStructuralModel property) hasRecordType (samson.SBAtom property) hasResidueSequenceNumber (samson.SBAtom property) hasResonance (samson.SBAtom property) hasSecondaryStructureInformation (samson.SBStructuralModel property) hasSelectedNodes() (samson.SBDocument method) hasSelector (samson.SBVisualPreset property) hasSerialNumber (samson.SBAtom property) hasSideChainCharge (samson.SBResidue property) hasSideChainChargeForResidueType() (samson.SBResidue static method) hasSideChainPolarity (samson.SBResidue property) hasSideChainPolarityForResidueType() (samson.SBResidue static method) Hassium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) hasStandardResidueName() (samson.SBResidue method) hasStatusBit (samson.SBAtom property) (samson.SBBond property) (samson.SBStructuralGroup property) hasStructuralID (samson.SBStructuralGroup property) hasSubstructureSequenceNumber (samson.SBAtom property) hasSYBYLType (samson.SBAtom property) hasTemperatureFactor (samson.SBAtom property) hasTitleInformation (samson.SBStructuralModel property) hasTransparencyRange (samson.SBNode property) hasVisualModel (samson.SBVisualPreset property) hasWaterFlag (samson.SBAtom property) hBar (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) hcd (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) HCLfromSRGB() (samson.SBColor static method) He (samson.SBElement attribute) (samson.SBElement.ElementType attribute) hectoampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) hectocandela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) hectogram (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) hectokelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) hectometer (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) hectomole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Helium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) henry (class in samson.SBQuantity) hertz (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) HessaEtAl2005 (samson.SBResidue attribute) (samson.SBResidue.HydrophobicityScale attribute) heterogenInformation (samson.SBStructuralModel property) Hf (samson.SBElement attribute) (samson.SBElement.ElementType attribute) hg (class in samson.SBQuantity) Hg (samson.SBElement attribute) (samson.SBElement.ElementType attribute) hg (samson.SBQuantity.unitsSI property) hideProgressBar() (in module samson.SAMSON) hideStructureFlag (samson.SBVisualPreset property) HigherQuality (samson.SBRenderPreset attribute) (samson.SBRenderPreset.AntiAliasingPreset attribute) HighestQuality (samson.SBRenderPreset attribute) (samson.SBRenderPreset.AntiAliasingPreset attribute) Highlight (samson.SBAnimation attribute) (samson.SBAnimation.Category attribute) HighlightAnimation (samson.SBClass attribute) (samson.SBClass.Type attribute) highlightingFlag (samson.SBAction property) (samson.SBNode property) HighQuality (samson.SBRenderPreset attribute) (samson.SBRenderPreset.ShadowPreset attribute) HIS (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) hK (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) hm (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) hmol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Ho (samson.SBElement attribute) (samson.SBElement.ElementType attribute) hold() (in module samson.SAMSON) Holmium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Hs (samson.SBElement attribute) (samson.SBElement.ElementType attribute) HSVfromSRGB() (samson.SBColor static method) hue1 (samson.SBPaletteDiverging property) (samson.SBPaletteFlexibleDivergingHCL property) (samson.SBPaletteQualitative property) (samson.SBPaletteSequential property) hue2 (samson.SBPaletteDiverging property) (samson.SBPaletteFlexibleDivergingHCL property) (samson.SBPaletteQualitative property) (samson.SBPaletteSequential property) hue3 (samson.SBPaletteFlexibleDivergingHCL property) hybridization (samson.SBAtom property) hybridizationString (samson.SBAtom property) Hydrogen (samson.SBElement attribute) (samson.SBElement.ElementType attribute) HydrogenBond (samson.SBNode attribute) (samson.SBNode.Type attribute) HydrogenBondGroup (samson.SBNode attribute) (samson.SBNode.Type attribute) hydrophobicityScale (samson.SBResidue property) hydrophobicityScaleString (samson.SBResidue property) Hz (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) I I (samson.SBElement attribute) (samson.SBElement.ElementType attribute) (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) iconFileName (samson.SBProxy property) identity() (samson.SBPhysicalMatrix33 static method) (samson.SBSpatialTransform static method) ILE (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) Image (samson.SBRenderPreset attribute) (samson.SBRenderPreset.BackgroundType attribute) ImageBase64ReadOnly (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) ImageBase64ReadWrite (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) ImageBase64ReadWriteClear (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) ImagePathReadOnly (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) ImagePathReadWrite (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) ImagePathReadWriteClear (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) Importer (samson.SBClass attribute) (samson.SBClass.Type attribute) importFromFile() (in module samson.SAMSON) In (samson.SBElement attribute) (samson.SBElement.ElementType attribute) index() (samson.SBNodeIndexer method) Indium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) inertiaFlag (samson.SBCamera property) informUser() (in module samson.SAMSON) initialize() (samson.SBFolder method) (samson.SBPresentation method) initializeInteractions() (samson.SBInteractionModel method) initializeNeighborLists() (samson.SBNeighborSearchParticleSystem method) (samson.SBNeighborSearchParticleSystemPBC method) insert() (samson.SBPath method) insertAtom() (samson.SBConformation method) (samson.SBPath method) insertionCode (samson.SBAtom property) Inspector (samson.SBClass attribute) (samson.SBClass.Type attribute) InspectorFactory (samson.SBClass attribute) (samson.SBClass.Type attribute) intensity (class in samson.SBQuantity) InteractionModel (samson.SBNode attribute) (samson.SBNode.Type attribute) InteractionModelArticulatedBodySystem (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) InteractionModelParticleSystem (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) InteractionModelParticleSystemFactory (samson.SBClass attribute) (samson.SBClass.Type attribute) InteractionModelRigidBodySystem (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) interactionModelType (samson.SBInteractionModel property) intersectGroupNodesWithSelection() (samson.SBDocument method) inverse() (samson.SBPhysicalMatrix33 method) (samson.SBSpatialTransform method) inverseAg (class in samson.SBQuantity) inverseAm (class in samson.SBQuantity) inverseAmountOfSubstance (class in samson.SBQuantity) inverseAngstrom (class in samson.SBQuantity) inverseArea (class in samson.SBQuantity) inverseAs (class in samson.SBQuantity) inverseAttogram (class in samson.SBQuantity) inverseAttometer (class in samson.SBQuantity) inverseAttosecond (class in samson.SBQuantity) inverseCentigram (class in samson.SBQuantity) inverseCentimeter (class in samson.SBQuantity) inverseCentisecond (class in samson.SBQuantity) inverseCg (class in samson.SBQuantity) inverseCm (class in samson.SBQuantity) inverseCs (class in samson.SBQuantity) inverseCubicAm (class in samson.SBQuantity) inverseCubicAngstrom (class in samson.SBQuantity) inverseCubicAttometer (class in samson.SBQuantity) inverseCubicCentimeter (class in samson.SBQuantity) inverseCubicCm (class in samson.SBQuantity) inverseCubicDam (class in samson.SBQuantity) inverseCubicDecameter (class in samson.SBQuantity) inverseCubicDecimeter (class in samson.SBQuantity) inverseCubicDistance (class in samson.SBQuantity) inverseCubicDm (class in samson.SBQuantity) inverseCubicFemtometer (class in samson.SBQuantity) inverseCubicFm (class in samson.SBQuantity) inverseCubicHectometer (class in samson.SBQuantity) inverseCubicHm (class in samson.SBQuantity) inverseCubicKilometer (class in samson.SBQuantity) inverseCubicKm (class in samson.SBQuantity) inverseCubicLength (class in samson.SBQuantity) inverseCubicM (class in samson.SBQuantity) inverseCubicMeter (class in samson.SBQuantity) inverseCubicMicrometer (class in samson.SBQuantity) inverseCubicMillimeter (class in samson.SBQuantity) inverseCubicMm (class in samson.SBQuantity) inverseCubicNanometer (class in samson.SBQuantity) inverseCubicNm (class in samson.SBQuantity) inverseCubicPicometer (class in samson.SBQuantity) inverseCubicPm (class in samson.SBQuantity) inverseCubicUm (class in samson.SBQuantity) inverseCubicYm (class in samson.SBQuantity) inverseCubicYoctometer (class in samson.SBQuantity) inverseCubicZeptometer (class in samson.SBQuantity) inverseCubicZm (class in samson.SBQuantity) inverseDag (class in samson.SBQuantity) inverseDam (class in samson.SBQuantity) inverseDecagram (class in samson.SBQuantity) inverseDecameter (class in samson.SBQuantity) inverseDecigram (class in samson.SBQuantity) inverseDecimeter (class in samson.SBQuantity) inverseDecisecond (class in samson.SBQuantity) inverseDg (class in samson.SBQuantity) inverseDistance (class in samson.SBQuantity) inverseDm (class in samson.SBQuantity) inverseDs (class in samson.SBQuantity) inverseFemtogram (class in samson.SBQuantity) inverseFemtometer (class in samson.SBQuantity) inverseFemtosecond (class in samson.SBQuantity) inverseFg (class in samson.SBQuantity) inverseFm (class in samson.SBQuantity) inverseForce (class in samson.SBQuantity) inverseFs (class in samson.SBQuantity) inverseG (class in samson.SBQuantity) inverseGram (class in samson.SBQuantity) inverseHectogram (class in samson.SBQuantity) inverseHectometer (class in samson.SBQuantity) inverseHg (class in samson.SBQuantity) inverseHm (class in samson.SBQuantity) inverseIntensity (class in samson.SBQuantity) inverseKg (class in samson.SBQuantity) inverseKilogram (class in samson.SBQuantity) inverseKilometer (class in samson.SBQuantity) inverseKm (class in samson.SBQuantity) inverseLength (class in samson.SBQuantity) inverseLengthInverseMass (class in samson.SBQuantity) inverseLuminousIntensity (class in samson.SBQuantity) inverseM (class in samson.SBQuantity) inverseMass (class in samson.SBQuantity) inverseMeter (class in samson.SBQuantity) inverseMg (class in samson.SBQuantity) inverseMicrogram (class in samson.SBQuantity) inverseMicrometer (class in samson.SBQuantity) inverseMicrosecond (class in samson.SBQuantity) inverseMilligram (class in samson.SBQuantity) inverseMillimeter (class in samson.SBQuantity) inverseMillisecond (class in samson.SBQuantity) inverseMm (class in samson.SBQuantity) inverseMomentOfInertia (class in samson.SBQuantity) inverseMomentum (class in samson.SBQuantity) inverseMs (class in samson.SBQuantity) inverseNanogram (class in samson.SBQuantity) inverseNanometer (class in samson.SBQuantity) inverseNanosecond (class in samson.SBQuantity) inverseNg (class in samson.SBQuantity) inverseNm (class in samson.SBQuantity) inverseNs (class in samson.SBQuantity) inversePg (class in samson.SBQuantity) inversePicogram (class in samson.SBQuantity) inversePicometer (class in samson.SBQuantity) inversePicosecond (class in samson.SBQuantity) inversePm (class in samson.SBQuantity) inversePs (class in samson.SBQuantity) inverseS (class in samson.SBQuantity) inverseSecond (class in samson.SBQuantity) inverseSquareAm (class in samson.SBQuantity) inverseSquareAmountOfSubstance (class in samson.SBQuantity) inverseSquareAngstrom (class in samson.SBQuantity) inverseSquareAttometer (class in samson.SBQuantity) inverseSquareCentimeter (class in samson.SBQuantity) inverseSquareCm (class in samson.SBQuantity) inverseSquareDam (class in samson.SBQuantity) inverseSquareDecameter (class in samson.SBQuantity) inverseSquareDecimeter (class in samson.SBQuantity) inverseSquareDistance (class in samson.SBQuantity) inverseSquareDm (class in samson.SBQuantity) inverseSquareFemtometer (class in samson.SBQuantity) inverseSquareFemtosecond (class in samson.SBQuantity) inverseSquareFm (class in samson.SBQuantity) inverseSquareHectometer (class in samson.SBQuantity) inverseSquareHm (class in samson.SBQuantity) inverseSquareIntensity (class in samson.SBQuantity) inverseSquareKilometer (class in samson.SBQuantity) inverseSquareKm (class in samson.SBQuantity) inverseSquareLength (class in samson.SBQuantity) inverseSquareLuminousIntensity (class in samson.SBQuantity) inverseSquareM (class in samson.SBQuantity) inverseSquareMass (class in samson.SBQuantity) inverseSquareMeter (class in samson.SBQuantity) inverseSquareMicrometer (class in samson.SBQuantity) inverseSquareMillimeter (class in samson.SBQuantity) inverseSquareMm (class in samson.SBQuantity) inverseSquareNanometer (class in samson.SBQuantity) inverseSquareNm (class in samson.SBQuantity) inverseSquarePicometer (class in samson.SBQuantity) inverseSquarePm (class in samson.SBQuantity) inverseSquareTemperature (class in samson.SBQuantity) inverseSquareTime (class in samson.SBQuantity) inverseSquareUm (class in samson.SBQuantity) inverseSquareYm (class in samson.SBQuantity) inverseSquareYoctometer (class in samson.SBQuantity) inverseSquareZeptometer (class in samson.SBQuantity) inverseSquareZm (class in samson.SBQuantity) inverseTemperature (class in samson.SBQuantity) inverseTime (class in samson.SBQuantity) inverseTransformAcceleration() (samson.SBSpatialTransform method) inverseTransformVelocity() (samson.SBSpatialTransform method) inverseUg (class in samson.SBQuantity) inverseUm (class in samson.SBQuantity) inverseUs (class in samson.SBQuantity) inverseVolume (class in samson.SBQuantity) inverseYg (class in samson.SBQuantity) inverseYm (class in samson.SBQuantity) inverseYoctogram (class in samson.SBQuantity) inverseYoctometer (class in samson.SBQuantity) inverseYoctosecond (class in samson.SBQuantity) inverseYs (class in samson.SBQuantity) inverseZeptogram (class in samson.SBQuantity) inverseZeptometer (class in samson.SBQuantity) inverseZeptosecond (class in samson.SBQuantity) inverseZg (class in samson.SBQuantity) inverseZm (class in samson.SBQuantity) inverseZs (class in samson.SBQuantity) Iodine (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Ir (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Iridium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Iron (samson.SBElement attribute) (samson.SBElement.ElementType attribute) isActinide (samson.SBAtom property) (samson.SBElement property) isActinide() (samson.SBElementTable static method) isAlkaliMetal (samson.SBAtom property) (samson.SBElement property) isAlkaliMetal() (samson.SBElementTable static method) isAlkalineEarthMetal (samson.SBAtom property) (samson.SBElement property) isAlkalineEarthMetal() (samson.SBElementTable static method) isAmideBond() (samson.SBBond method) isAminoAcid (samson.SBResidue property) isAminoAcidResidueType() (samson.SBResidue static method) isAppInitialized() (in module samson.SAMSON) isAtom() (samson.SBNode method) isAttachedToHydrogenBondDonor() (samson.SBAtom method) isBallAndStick() (samson.SBNode method) isBond() (samson.SBNode method) isCarbon() (samson.SBAtom method) isCarbonylBond() (samson.SBBond method) isCarboxylOxygen() (samson.SBAtom method) isCartoon() (samson.SBNode method) isCoarseGrained() (samson.SBAtom method) isContainedIn() (samson.SBPhysicalIAVector3 method) isCreated (samson.SBNode property) isCustomBackground (samson.SBRenderPreset property) isDiatomicNonmetal (samson.SBAtom property) (samson.SBElement property) isDiatomicNonmetal() (samson.SBElementTable static method) isDimensionless (samson.SBPhysicalIAVector3 property) (samson.SBPhysicalInterval property) (samson.SBPhysicalMatrix33 property) (samson.SBPhysicalMatrix66 property) (samson.SBPhysicalVector3 property) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsDalton property) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsKilocaloriePerMole property) (samson.SBQuantity.unitsSI property) isDiscoverable (samson.SBAction property) (samson.SBProxy property) isDonorBorneHydrogen() (samson.SBAtom method) isDynamicalModel() (samson.SBNode method) isEmpty (samson.SBNodeIndexer property) isEmpty() (samson.SBPhysicalInterval method) isErased (samson.SBNode property) isEsterBond() (samson.SBBond method) isFixed (samson.SBAtom property) isFromAminoAcidBackbone (samson.SBAtom property) isFromNucleicAcidBackbone (samson.SBAtom property) isGaussianSurface() (samson.SBNode method) isGUIThread() (in module samson.SAMSON) isHalogen (samson.SBAtom property) (samson.SBElement property) isHalogen() (samson.SBElementTable static method) isHighlighted (samson.SBNode property) isHolding() (in module samson.SAMSON) isHydrogen() (samson.SBAtom method) isHydrogenBondAcceptor() (samson.SBAtom method) isHydrogenBondDonor() (samson.SBAtom method) isImageBackground (samson.SBRenderPreset property) isIn() (samson.SBNode method) isInAminoAcid (samson.SBAtom property) isInBackbone (samson.SBAtom property) isInChain (samson.SBAtom property) isInMolecule (samson.SBAtom property) isInNucleicAcid (samson.SBAtom property) isInResidue (samson.SBAtom property) isInSegment (samson.SBAtom property) isInSideChain (samson.SBAtom property) isInSubstructure (samson.SBAtom property) isInteractionModel() (samson.SBNode method) isLanthanide (samson.SBAtom property) (samson.SBElement property) isLanthanide() (samson.SBElementTable static method) isLicorice() (samson.SBNode method) isLight() (samson.SBNode method) isLinking() (samson.SBBond method) isLocked (samson.SBAction property) (samson.SBAsset property) (samson.SBNode property) isMesh() (samson.SBNode method) isMetal (samson.SBAtom property) (samson.SBElement property) isMetal() (samson.SBElementTable static method) isMetalloid (samson.SBAtom property) (samson.SBElement property) isMetalloid() (samson.SBElementTable static method) isModel() (samson.SBNode method) isMonatomicIon() (samson.SBStructuralGroup method) isMoving() (samson.SBCamera method) isNitrogen() (samson.SBAtom method) isNitroOxygen() (samson.SBAtom method) isNobleGas (samson.SBAtom property) (samson.SBElement property) isNobleGas() (samson.SBElementTable static method) isNucleicAcid (samson.SBResidue property) isNucleicAcidResidueType() (samson.SBResidue static method) isoelectricPointPH (samson.SBResidue property) isOneOf() (samson.SBNode method) isOxygen() (samson.SBAtom method) isPerAttributeColorScheme() (samson.SBVisualPreset static method) isPlanar() (samson.SBAtom method) (samson.SBStructuralModel static method) isPolyatomicNonmetal (samson.SBAtom property) (samson.SBElement property) isPolyatomicNonmetal() (samson.SBElementTable static method) isPostTransitionMetal (samson.SBAtom property) (samson.SBElement property) isPostTransitionMetal() (samson.SBElementTable static method) isPrimaryAmideBond() (samson.SBBond method) isProgressBarStopped() (in module samson.SAMSON) isPropertyModel() (samson.SBNode method) isReactiveNonmetal (samson.SBAtom property) (samson.SBElement property) isReactiveNonmetal() (samson.SBElementTable static method) isRedoing() (in module samson.SAMSON) isRibbon() (samson.SBNode method) isSaved (samson.SBDocument property) isSecondaryAmideBond() (samson.SBBond method) isSelected (samson.SBNode property) isSerializable (samson.SBColor property) (samson.SBNode property) (samson.SBNodeColorScheme property) (samson.SBNodeMaterial property) (samson.SBNodeSelector property) (samson.SBPalette property) isSimulator() (samson.SBNode method) isSolventAccessibleSurface() (samson.SBNode method) isSolventExcludedSurface() (samson.SBNode method) isStandardAminoAcidName() (samson.SBResidue static method) isStandardNucleicAcidName() (samson.SBResidue static method) isStandardResidueName() (samson.SBResidue static method) isStructuralModel() (samson.SBNode method) isStructuralNode() (samson.SBNode method) isSulfoneOxygen() (samson.SBAtom method) isSulfur() (samson.SBAtom method) isTerminal (samson.SBResidue property) isTertiaryAmideBond() (samson.SBBond method) isThiocarboxylOxygen() (samson.SBAtom method) isTransitionMetal (samson.SBAtom property) (samson.SBElement property) isTransitionMetal() (samson.SBElementTable static method) isTrusted (samson.SBDocument property) isTube() (samson.SBNode method) isType() (samson.SBNode method) isUndoing() (in module samson.SAMSON) isUnknown() (samson.SBAtom method) isValid (samson.SBUUID property) isVanDerWaals() (samson.SBNode method) isVisible (samson.SBNode property) isVisualModel() (samson.SBNode method) isWater() (samson.SBStructuralGroup method) J J (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsKilocaloriePerMole property) (samson.SBQuantity.unitsSI property) joule (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsKilocaloriePerMole property) (samson.SBQuantity.unitsSI property) joulePerKelvin (class in samson.SBQuantity) joulePerMole (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsKilocaloriePerMole property) (samson.SBQuantity.unitsSI property) joulePerMoleToElectronvolt (samson.SBQuantity.unitsSI property) joulePerMoleToHartree (samson.SBQuantity.unitsSI property) joulePerMoleToKilocaloriePerMole (samson.SBQuantity.unitsSI property) jouleSecond (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) JPerK (class in samson.SBQuantity) JPerMol (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsKilocaloriePerMole property) (samson.SBQuantity.unitsSI property) JPerMolToEh (samson.SBQuantity.unitsSI property) JPerMolToeV (samson.SBQuantity.unitsSI property) JperMolTokcalPerMol (samson.SBQuantity.unitsSI property) JS (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) K K (class in samson.SBQuantity) (samson.SBElement attribute) (samson.SBElement.ElementType attribute) (samson.SBQuantity.unitsSI property) kA (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Kat (class in samson.SBQuantity) katal (class in samson.SBQuantity) kB (samson.SBConstant attribute) kcalPerMol (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsSI property) kcd (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) kDa (class in samson.SBQuantity) (samson.SBQuantity.unitsDalton property) kelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) kg (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsDalton property) (samson.SBQuantity.unitsSI property) kHz (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) kiloampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) kilocaloriePerMole (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsSI property) kilocandela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) kilodalton (class in samson.SBQuantity) (samson.SBQuantity.unitsDalton property) kilogram (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsDalton property) (samson.SBQuantity.unitsSI property) kilohertz (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) kilojoule (class in samson.SBQuantity) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsSI property) kilojoulePerMole (class in samson.SBQuantity) kilokelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) kilometer (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) kilomole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) kJ (class in samson.SBQuantity) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsSI property) kJPerMol (class in samson.SBQuantity) kK (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) km (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) kmol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Kr (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Krypton (samson.SBElement attribute) (samson.SBElement.ElementType attribute) KyteDoolittle1982 (samson.SBResidue attribute) (samson.SBResidue.HydrophobicityScale attribute) L La (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Label (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) LabelFactory (samson.SBClass attribute) (samson.SBClass.Type attribute) Lanthanide (samson.SBElement attribute) (samson.SBElement.MetalSubcategory attribute) Lanthanum (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Lawrencium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Lead (samson.SBElement attribute) (samson.SBElement.ElementType attribute) leftAtom (samson.SBBond property) leftBackBottomView() (samson.SBCamera method) leftBackTopView() (samson.SBCamera method) leftFrontBottomView() (samson.SBCamera method) leftFrontTopView() (samson.SBCamera method) leftView() (samson.SBCamera method) length (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) lengthMass (class in samson.SBQuantity) lengthPerForce (class in samson.SBQuantity) lengthsSum() (samson.SBPhysicalIAVector3 method) LEU (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) Li (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Light (samson.SBNode attribute) (samson.SBNode.Type attribute) lightenSRGBColor() (samson.SBColor static method) lightingPreset (samson.SBRenderPreset property) Linear (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) Lithium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Livermorium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) lm (class in samson.SBQuantity) localXAxis (samson.SBColor attribute) localYAxis (samson.SBColor attribute) localZAxis (samson.SBColor attribute) lockedFlag (samson.SBNode property) log() (in module samson.SBQuantity) Loop (samson.SBPath attribute) (samson.SBPath.AnimationType attribute) lowerBound() (samson.SBPhysicalIAVector3 method) LowQuality (samson.SBRenderPreset attribute) (samson.SBRenderPreset.ShadowPreset attribute) Lr (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Lu (samson.SBElement attribute) (samson.SBElement.ElementType attribute) lumen (class in samson.SBQuantity) luminance (samson.SBPaletteQualitative property) luminance1 (samson.SBPaletteDiverging property) (samson.SBPaletteFlexibleDivergingHCL property) (samson.SBPaletteSequential property) luminance2 (samson.SBPaletteDiverging property) (samson.SBPaletteFlexibleDivergingHCL property) (samson.SBPaletteSequential property) luminance3 (samson.SBPaletteFlexibleDivergingHCL property) luminancePower (samson.SBPaletteDiverging property) (samson.SBPaletteSequential property) luminancePower1 (samson.SBPaletteFlexibleDivergingHCL property) luminancePower2 (samson.SBPaletteFlexibleDivergingHCL property) luminousIntensity (class in samson.SBQuantity) Lutetium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) lux (class in samson.SBQuantity) Lv (samson.SBElement attribute) (samson.SBElement.ElementType attribute) lx (class in samson.SBQuantity) (samson.SBPhysicalVector6 property) ly (samson.SBPhysicalVector6 property) LYS (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) lz (samson.SBPhysicalVector6 property) M m (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsSI property) mA (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) magenta (samson.SBColor attribute) Magnesium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) magneticDensity (class in samson.SBQuantity) major (samson.SBVersionNumber property) makeAnimation() (in module samson.SAMSON) makeEulerRotationZYZ() (samson.SBPhysicalMatrix33 method) makeInteractionModel() (in module samson.SAMSON) makeNeighborSearch() (in module samson.SAMSON) makePropertyModel() (in module samson.SAMSON) makeSelector() (in module samson.SAMSON) makeSimulator() (in module samson.SAMSON) makeStateUpdater() (in module samson.SAMSON) makeVisualModel() (in module samson.SAMSON) Manganese (samson.SBElement attribute) (samson.SBElement.ElementType attribute) mass (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) Materials (samson.SBClass attribute) (samson.SBClass.Category attribute) maximumChroma (samson.SBPaletteDiverging property) (samson.SBPaletteSequential property) maximumChroma1 (samson.SBPaletteFlexibleDivergingHCL property) maximumChroma2 (samson.SBPaletteFlexibleDivergingHCL property) maximumDisplayRadius (samson.SBLabel property) maximumOpacity (samson.SBNode property) maximumTransparency (samson.SBNode property) Mc (samson.SBElement attribute) (samson.SBElement.ElementType attribute) mcd (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Md (samson.SBElement attribute) (samson.SBElement.ElementType attribute) MDa (class in samson.SBQuantity) mDa (samson.SBQuantity.unitsDalton property) me (class in samson.SBQuantity) Medicine (samson.SBClass attribute) (samson.SBClass.Category attribute) MediumQuality (samson.SBRenderPreset attribute) (samson.SBRenderPreset.ShadowPreset attribute) megadalton (class in samson.SBQuantity) (samson.SBQuantity.unitsDalton property) megahertz (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Meitnerium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Mendelevium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Mercury (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Mesh (samson.SBNode attribute) (samson.SBNode.Type attribute) MET (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) metallicCoefficient (samson.SBNodeMaterial property) Metalloid (samson.SBElement attribute) (samson.SBElement.MetalSubcategory attribute) metalSubcategory (samson.SBAtom property) (samson.SBElement property) metalSubcategory() (samson.SBElementTable static method) metalSubcategoryString (samson.SBAtom property) (samson.SBElement property) metalSubcategoryString() (samson.SBElementTable static method) meter (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsSI property) Metrology (samson.SBClass attribute) (samson.SBClass.Category attribute) mg (class in samson.SBQuantity) Mg (samson.SBElement attribute) (samson.SBElement.ElementType attribute) mg (samson.SBQuantity.unitsSI property) MHz (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) microampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) microcandela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) microgram (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) microkelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) micrometer (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) micromole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) micron (class in samson.SBQuantity) microsecond (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) milliampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) millicandela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) milligram (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) millikelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) millimeter (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) millimole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) millisecond (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) millisecondsSinceEpoch (samson.SBDateTime property) minimize() (in module samson.SAMSON) minimumDisplayRadius (samson.SBLabel property) minimumLimitOfMaximumDisplayRadius (samson.SBLabel property) minimumLimitOfMinimumDisplayRadius (samson.SBLabel property) minimumOpacity (samson.SBNode property) minimumTransparency (samson.SBNode property) minimumUserPlan (samson.SBProxy property) minor (samson.SBVersionNumber property) miscellaneousInformation (samson.SBStructuralModel property) mK (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) mm (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) mmol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Mn (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Mo (samson.SBElement attribute) (samson.SBElement.ElementType attribute) mobilityFlag (samson.SBAtom property) Modeling (samson.SBClass attribute) (samson.SBClass.Category attribute) modelType (samson.SBModel property) (samson.SBStructuralModel property) module samson.SAMSON samson.SBQuantity mol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) mole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) molecularWeight (samson.SBNode property) Molecule (samson.SBNode attribute) (samson.SBNode.Type attribute) moleculeName (samson.SBAtom property) Molybdenum (samson.SBElement attribute) (samson.SBElement.ElementType attribute) momentOfInertia (class in samson.SBQuantity) momentum (class in samson.SBQuantity) MoneraEtAl1995 (samson.SBResidue attribute) (samson.SBResidue.HydrophobicityScale attribute) MoonFleming2011 (samson.SBResidue attribute) (samson.SBResidue.HydrophobicityScale attribute) Moscovium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Motion (samson.SBAnimation attribute) (samson.SBAnimation.Category attribute) MotionAnimation (samson.SBClass attribute) (samson.SBClass.Type attribute) motionCrossForce() (samson.SBPhysicalVector6 method) moveKeyframe() (samson.SBAnimation method) ms (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Mt (samson.SBElement attribute) (samson.SBElement.ElementType attribute) N N (class in samson.SBQuantity) (samson.SBElement attribute) (samson.SBElement.ElementType attribute) (samson.SBQuantity.unitsSI property) nA (class in samson.SBQuantity) NA (samson.SBConstant attribute) Na (samson.SBElement attribute) (samson.SBElement.ElementType attribute) nA (samson.SBQuantity.unitsSI property) name (samson.SBAction property) (samson.SBAnimation.Category property) (samson.SBAtom property) (samson.SBAtom.Geometry property) (samson.SBAtom.Hybridization property) (samson.SBAttribute property) (samson.SBAttribute.Type property) (samson.SBBond.BondType property) (samson.SBClass.Category property) (samson.SBClass.Type property) (samson.SBElement property) (samson.SBElement.ElementType property) (samson.SBElement.MetalSubcategory property) (samson.SBNode property) (samson.SBNode.Type property) (samson.SBNodeSelector property) (samson.SBPalette property) (samson.SBPalette.PaletteType property) (samson.SBPath.AnimationType property) (samson.SBProxy property) (samson.SBRenderPreset.AntiAliasingPreset property) (samson.SBRenderPreset.BackgroundImageMode property) (samson.SBRenderPreset.BackgroundType property) (samson.SBRenderPreset.LightingPreset property) (samson.SBRenderPreset.ShadowPreset property) (samson.SBResidue.HydrophobicityScale property) (samson.SBResidue.ResidueType property) (samson.SBResidue.SecondaryStructureType property) (samson.SBResidue.SideChainCharge property) (samson.SBResidue.SideChainPolarity property) (samson.SBUserPlan.Type property) (samson.SBVisualPresetGroup property) nanoampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) nanocandela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) nanogram (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) nanokelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) nanometer (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsSI property) nanomole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) nanonewton (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) nanonewtonPerPicometer (class in samson.SBQuantity) nanosecond (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Nb (samson.SBElement attribute) (samson.SBElement.ElementType attribute) ncd (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Nd (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Ne (samson.SBElement attribute) (samson.SBElement.ElementType attribute) nearPlane (samson.SBCamera property) Negative (samson.SBResidue attribute) (samson.SBResidue.SideChainCharge attribute) NeighborSearchArticulatedBodySystem (samson.SBClass attribute) (samson.SBClass.Type attribute) NeighborSearchParticleSystem (samson.SBClass attribute) (samson.SBClass.Type attribute) NeighborSearchRigidBodySystem (samson.SBClass attribute) (samson.SBClass.Type attribute) Neodymium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Neon (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Neptunium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Neutral (samson.SBResidue attribute) (samson.SBResidue.SideChainCharge attribute) neutralPoint (samson.SBPaletteDiverging property) (samson.SBPaletteFlexibleDivergingHCL property) neutronMass (samson.SBConstant attribute) newton (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) ng (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Nh (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Ni (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Nickel (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Nihonium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Niobium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Nitrogen (samson.SBElement attribute) (samson.SBElement.ElementType attribute) nK (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) nm (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsSI property) nmol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) nN (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) nNPerPm (class in samson.SBQuantity) No (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Nobelium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) NobleGas (samson.SBElement attribute) (samson.SBElement.MetalSubcategory attribute) NodeGroup (samson.SBNode attribute) (samson.SBNode.Type attribute) NodeGUI (samson.SBClass attribute) (samson.SBClass.Type attribute) nodeIndex (samson.SBNode property) NoHybridization (samson.SBAtom attribute) (samson.SBAtom.Hybridization attribute) Nonpolar (samson.SBResidue attribute) (samson.SBResidue.SideChainPolarity attribute) NoPlan (samson.SBUserPlan attribute) (samson.SBUserPlan.Type attribute) norm() (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalVector3 method) norm2() (samson.SBPhysicalVector3 method) normalize() (samson.SBPhysicalVector3 method) normalizedVersion() (samson.SBPhysicalVector3 method) normalizedVersionWithUnits() (samson.SBPhysicalVector3 method) normalizeWithUnits() (samson.SBPhysicalVector3 method) Note (samson.SBNode attribute) (samson.SBNode.Type attribute) Np (samson.SBElement attribute) (samson.SBElement.ElementType attribute) ns (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) NSLExpression (samson.SBNodeSelector property) numberOfAtoms (samson.SBNode property) (samson.SBPath property) numberOfCarbons (samson.SBNode property) numberOfChains (samson.SBNode property) numberOfChangedForces (samson.SBInteractionModel property) numberOfChangedMomentums (samson.SBParticleSystem property) numberOfCoarseGrainedAtoms (samson.SBNode property) numberOfElements (samson.SBElementTable property) numberOfHydrogens (samson.SBNode property) numberOfKeyframes (samson.SBAnimation property) numberOfMolecules (samson.SBNode property) numberOfNitrogens (samson.SBNode property) numberOfOtherAtoms (samson.SBNode property) numberOfOxygens (samson.SBNode property) numberOfResidues (samson.SBNode property) numberOfSegments (samson.SBNode property) numberOfSteps (samson.SBPath property) (samson.SBStateUpdater property) numberOfStructuralGroups (samson.SBNode property) numberOfStructuralModels (samson.SBNode property) numberOfStructuralParticles (samson.SBConformation property) numberOfSulfurs (samson.SBNode property) O O (class in samson.SBQuantity) (samson.SBElement attribute) (samson.SBElement.ElementType attribute) occupancy (samson.SBAtom property) Octahedral (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) Og (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Oganesson (samson.SBElement attribute) (samson.SBElement.ElementType attribute) ohm (class in samson.SBQuantity) Once (samson.SBPath attribute) (samson.SBPath.AnimationType attribute) opacity (samson.SBNode property) Optics (samson.SBClass attribute) (samson.SBClass.Category attribute) orange (samson.SBColor attribute) order (samson.SBBond property) orientAminoAcidSideChain() (samson.SBResidue method) orthographicProjectionFlag (samson.SBCamera property) orthonormalize() (samson.SBPhysicalMatrix33 method) Os (samson.SBElement attribute) (samson.SBElement.ElementType attribute) OSAOFlag (samson.SBRenderPreset property) OSAOGridSize (samson.SBRenderPreset property) OSAOStrength (samson.SBRenderPreset property) Osmium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Other (samson.SBAnimation attribute) (samson.SBAnimation.Category attribute) OtherAnimation (samson.SBClass attribute) (samson.SBClass.Type attribute) overlaps() (samson.SBPhysicalIAVector3 method) overlapsAdvanced() (samson.SBPhysicalIAVector3 method) ownsMaterial (samson.SBNode property) oxidationState (samson.SBAtom property) Oxygen (samson.SBElement attribute) (samson.SBElement.ElementType attribute) P P (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Pa (class in samson.SBQuantity) pA (class in samson.SBQuantity) Pa (samson.SBElement attribute) (samson.SBElement.ElementType attribute) pA (samson.SBQuantity.unitsSI property) Palladium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) partialCharge (samson.SBAtom property) Particle (samson.SBNode attribute) (samson.SBNode.Type attribute) Particles (samson.SBClass attribute) (samson.SBClass.Category attribute) ParticleSystem (samson.SBNode attribute) (samson.SBNode.Type attribute) patch (samson.SBVersionNumber property) Path (samson.SBNode attribute) (samson.SBNode.Type attribute) Pb (samson.SBElement attribute) (samson.SBElement.ElementType attribute) pcd (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Pd (samson.SBElement attribute) (samson.SBElement.ElementType attribute) PentagonalBipyramidal (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) PentagonalPlanar (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) PentagonalPyramidal (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) period (samson.SBAtom property) (samson.SBElement property) periodicBoundaryConditionsFlag (samson.SBDynamicalModel property) perS (class in samson.SBQuantity) perSecond (class in samson.SBQuantity) perYgPerSquarePm (class in samson.SBQuantity) perYoctogramPerSquarePicometer (class in samson.SBQuantity) pg (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Pharmacy (samson.SBClass attribute) (samson.SBClass.Category attribute) PHE (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) Phosphorus (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Photonics (samson.SBClass attribute) (samson.SBClass.Category attribute) Physics (samson.SBClass attribute) (samson.SBClass.Category attribute) Pi (samson.SBConstant attribute) picoampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) picocandela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) picogram (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) picokelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) picometer (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsSI property) picometerPerFemtosecond (class in samson.SBQuantity) picometerPerSecond (class in samson.SBQuantity) picometerPerSquareFemtosecond (class in samson.SBQuantity) picomole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) piconewton (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) picosecond (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) pinholeFlag (samson.SBRenderPreset property) pinholeSharpness (samson.SBRenderPreset property) pK (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Platinum (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Plutonium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) pm (class in samson.SBQuantity) Pm (samson.SBElement attribute) (samson.SBElement.ElementType attribute) pm (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsSI property) pmol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) pmPerFs (class in samson.SBQuantity) pmPerS (class in samson.SBQuantity) pmPerSquareFs (class in samson.SBQuantity) pN (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Po (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Polar (samson.SBResidue attribute) (samson.SBResidue.SideChainPolarity attribute) Polonium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) populateChainIDs() (samson.SBStructuralModel method) position (class in samson.SBQuantity) Positive (samson.SBResidue attribute) (samson.SBResidue.SideChainCharge attribute) PostTransitionMetal (samson.SBElement attribute) (samson.SBElement.MetalSubcategory attribute) Potassium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) pow() (in module samson.SBQuantity) Pr (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Praseodymium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Presentation (samson.SBNode attribute) (samson.SBNode.Type attribute) pressure (class in samson.SBQuantity) primaryStructureInformation (samson.SBStructuralModel property) printDataGraphState() (in module samson.SAMSON) printDebugInfo() (samson.SBColor method) (samson.SBElement method) (samson.SBNode method) (samson.SBNodeIndexer method) printFullMemoryUsage() (in module samson.SAMSON) printMemoryUsage() (in module samson.SAMSON) printRendererState() (in module samson.SAMSON) printUndoStack() (in module samson.SAMSON) PRO (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) processEvents() (in module samson.SAMSON) Professional (samson.SBUserPlan attribute) (samson.SBUserPlan.Type attribute) Promethium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Properties (samson.SBClass attribute) (samson.SBClass.Type attribute) PropertyModel (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) PropertyModelFactory (samson.SBClass attribute) (samson.SBClass.Type attribute) PropertyModelFunction (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) Protactinium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) protonMass (samson.SBConstant attribute) ps (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Pt (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Pu (samson.SBElement attribute) (samson.SBElement.ElementType attribute) publicName (samson.SBProxy property) PushButton (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) PYL (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) Q Qualitative (samson.SBPalette attribute) (samson.SBPalette.PaletteType attribute) qualitativeHCLBlue2Green (samson.SBPaletteDefaultPalette attribute) qualitativeHCLBlue2GreenDark (samson.SBPaletteDefaultPalette attribute) qualitativeHCLBlue2Red (samson.SBPaletteDefaultPalette attribute) qualitativeHCLBlue2RedDark (samson.SBPaletteDefaultPalette attribute) qualitativeHCLCold (samson.SBPaletteDefaultPalette attribute) qualitativeHCLDark2 (samson.SBPaletteDefaultPalette attribute) qualitativeHCLDark3 (samson.SBPaletteDefaultPalette attribute) qualitativeHCLDefault (samson.SBPaletteDefaultPalette attribute) qualitativeHCLDynamic (samson.SBPaletteDefaultPalette attribute) qualitativeHCLGreen2Blue (samson.SBPaletteDefaultPalette attribute) qualitativeHCLGreen2BlueDark (samson.SBPaletteDefaultPalette attribute) qualitativeHCLGreen2Red (samson.SBPaletteDefaultPalette attribute) qualitativeHCLGreen2RedDark (samson.SBPaletteDefaultPalette attribute) qualitativeHCLHarmonic (samson.SBPaletteDefaultPalette attribute) qualitativeHCLPastel (samson.SBPaletteDefaultPalette attribute) qualitativeHCLRed2Blue (samson.SBPaletteDefaultPalette attribute) qualitativeHCLRed2BlueDark (samson.SBPaletteDefaultPalette attribute) qualitativeHCLRed2Green (samson.SBPaletteDefaultPalette attribute) qualitativeHCLRed2GreenDark (samson.SBPaletteDefaultPalette attribute) qualitativeHCLSet2 (samson.SBPaletteDefaultPalette attribute) qualitativeHCLSet3 (samson.SBPaletteDefaultPalette attribute) qualitativeHCLWarm (samson.SBPaletteDefaultPalette attribute) quasiStaticUpdate() (samson.SBPhysicalMatrix33 method) R Ra (samson.SBElement attribute) (samson.SBElement.ElementType attribute) rad (class in samson.SBQuantity) radian (class in samson.SBQuantity) radianPerSecond (class in samson.SBQuantity) Radium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Radon (samson.SBElement attribute) (samson.SBElement.ElementType attribute) radPerS (class in samson.SBQuantity) RadToDeg (samson.SBConstant attribute) randDouble1() (samson.SBRandom method) randDouble2() (samson.SBRandom method) randDouble3() (samson.SBRandom method) randLong() (samson.SBRandom method) randRes53() (samson.SBRandom method) randUnitSphere3() (samson.SBRandom method) randUnsignedLong() (samson.SBRandom method) randUUID() (samson.SBRandom method) Rb (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Re (samson.SBElement attribute) (samson.SBElement.ElementType attribute) ReactiveNonmetal (samson.SBElement attribute) (samson.SBElement.MetalSubcategory attribute) ReadOnly (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) ReadWrite (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) ReadWriteClear (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) ReadWriteClearArray (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) ReadWriteList (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) ReadWriteRange (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) ReadWriteRangeSlider (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) red (samson.SBColor attribute) redInt (samson.SBColor property) redo() (in module samson.SAMSON) remove() (samson.SBPath method) removeAtom() (samson.SBConformation method) (samson.SBParticleSystem method) (samson.SBPath method) removeAtoms() (samson.SBParticleSystem method) removeChild() (samson.SBNode method) removeGroupNodesFromSelection() (samson.SBDocument method) removeHydrogens() (samson.SBAtom method) removeKeyframe() (samson.SBAnimation method) removeMaterial() (samson.SBNode method) removeMaterialsFromDescendants() (samson.SBNode method) removeNode() (samson.SBNodeIndexer method) removeNodeFromSelection() (samson.SBDocument method) renderMultipleBondsFlag (samson.SBRenderPreset property) RenderPreset (samson.SBNode attribute) (samson.SBNode.Type attribute) RenderProgram (samson.SBClass attribute) (samson.SBClass.Type attribute) replaceAtom() (samson.SBStructuralModel static method) replaceBond() (samson.SBStructuralModel static method) requestUpdate() (samson.SBNodeColorScheme method) requestViewportUpdate() (in module samson.SAMSON) reset() (samson.SBPhysicalIAVector3 method) resetPalette() (samson.SBNodeColorScheme method) (samson.SBVisualPreset method) Residue (samson.SBNode attribute) (samson.SBNode.Type attribute) residueName (samson.SBAtom property) residueSequenceNumber (samson.SBAtom property) residueSequenceNumberString (samson.SBAtom property) residueType (samson.SBResidue property) residueTypeFullName (samson.SBResidue property) residueTypeString (samson.SBAtom property) (samson.SBResidue property) resonance (samson.SBAtom property) restore() (samson.SBConformation method) reverseFlag (samson.SBPalette property) revoluteJointZAxisMatrix() (samson.SBPhysicalMatrix33 method) Rf (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Rg (samson.SBElement attribute) (samson.SBElement.ElementType attribute) RGBfromCIEXYZ() (samson.SBColor static method) RGBfromSRGB() (samson.SBColor static method) Rh (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Rhenium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Rhodium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) RichTextReadOnly (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) RichTextReadWrite (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) RichTextReadWriteClear (samson.SBAttribute attribute) (samson.SBAttribute.Type attribute) rightAtom (samson.SBBond property) rightBackBottomView() (samson.SBCamera method) rightBackTopView() (samson.SBCamera method) rightFrontBottomView() (samson.SBCamera method) rightFrontTopView() (samson.SBCamera method) rightMultiply3D() (samson.SBSpatialTransform method) rightMultiplyInverse3D() (samson.SBSpatialTransform method) rightView() (samson.SBCamera method) RigidBody (samson.SBNode attribute) (samson.SBNode.Type attribute) RigidBodySystem (samson.SBNode attribute) (samson.SBNode.Type attribute) Rn (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Roentgenium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Root (samson.SBNode attribute) (samson.SBNode.Type attribute) root() (in module samson.SBQuantity) rotate() (samson.SBCamera method) (samson.SBMesh method) (samson.SBStructuralModel method) rotateClockwise() (samson.SBCamera method) rotateCounterClockwise() (samson.SBCamera method) rotateDown() (samson.SBCamera method) rotateLeft() (samson.SBCamera method) rotateRight() (samson.SBCamera method) rotateUp() (samson.SBCamera method) roughnessCoefficient (samson.SBNodeMaterial property) round() (in module samson.SBQuantity) roundForPBC() (samson.SBParticleSystem method) Ru (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Rubidium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) runCommand() (in module samson.SAMSON) runPythonCode() (in module samson.SAMSON) runPythonFile() (in module samson.SAMSON) Ruthenium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Rutherfordium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) S S (class in samson.SBQuantity) s (class in samson.SBQuantity) S (samson.SBElement attribute) (samson.SBElement.ElementType attribute) s (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsSI property) Samarium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) sampledUnitSphere3() (samson.SBPhysicalVector3 static method) samson.SAMSON module samson.SBQuantity module Sb (samson.SBElement attribute) (samson.SBElement.ElementType attribute) SBAcceleration3 (class in samson) SBAcceleration6 (class in samson) SBAccelerationInterval (class in samson) SBAction (class in samson) SBAngularAcceleration3 (class in samson) SBAngularVelocity3 (class in samson) SBAnimation (class in samson) SBAnimation.Category (class in samson) SBAsset (class in samson) SBAtom (class in samson) SBAtom.Geometry (class in samson) SBAtom.Hybridization (class in samson) SBAttribute (class in samson) SBAttribute.Type (class in samson) SBBackbone (class in samson) SBBond (class in samson) SBBond.BondType (class in samson) SBCamera (class in samson) SBChain (class in samson) SBClass (class in samson) SBClass.Category (class in samson) SBClass.Type (class in samson) SBColor (class in samson) SBColorSchemeConstant (class in samson) SBColorSchemeConstantIllustrate (class in samson) SBColorSchemeCPK (class in samson) SBColorSchemePerAttribute_dimensionless (class in samson) SBColorSchemePerAttribute_double (class in samson) SBColorSchemePerAttribute_float (class in samson) SBColorSchemePerAttribute_int (class in samson) SBColorSchemePerChainID (class in samson) SBColorSchemePerChainIllustrate (class in samson) SBColorSchemePerFormalCharge (class in samson) SBColorSchemePerOccupancy (class in samson) SBColorSchemePerPartialCharge (class in samson) SBColorSchemePerResidueHydrophobicity (class in samson) SBColorSchemePerResidueSequenceNumber (class in samson) SBColorSchemePerResidueType (class in samson) SBColorSchemePerSecondaryStructureType (class in samson) SBColorSchemePerSideChainCharge (class in samson) SBColorSchemePerSideChainPolarity (class in samson) SBColorSchemePerTemperatureFactor (class in samson) SBConformation (class in samson) SBConstant (class in samson) SBDateTime (class in samson) SBDocument (class in samson) SBDynamicalModel (class in samson) SBElement (class in samson) SBElement.ElementType (class in samson) SBElement.MetalSubcategory (class in samson) SBElementTable (class in samson) SBEnergy3 (class in samson) SBEnergyInterval (class in samson) SBFile (class in samson) SBFolder (class in samson) SBForce3 (class in samson) SBForce6 (class in samson) SBForceInterval (class in samson) SBIAAcceleration3 (class in samson) SBIAForce3 (class in samson) SBIALength3 (class in samson) SBIAMomentum3 (class in samson) SBIAPosition3 (class in samson) SBIARadian3 (class in samson) SBIARadianPerSecond3 (class in samson) SBIAVector3 (class in samson) SBIAVelocity3 (class in samson) SBInertia66 (class in samson) SBInertiaTensor33 (class in samson) SBInteractionModel (class in samson) SBInteractionModelParticleSystem (class in samson) SBInterface (class in samson) SBInterval (class in samson) SBInverseInertia66 (class in samson) SBInverseInertiaTensor33 (class in samson) SBInverseLength3 (class in samson) SBInverseMass33 (class in samson) SBInverseMomentum3 (class in samson) SBLabel (class in samson) SBLength3 (class in samson) SBLengthInterval (class in samson) SBLight (class in samson) SBMass33 (class in samson) SBMatrix33 (class in samson) SBMatrix66 (class in samson) SBMesh (class in samson) SBModel (class in samson) SBModelNode (class in samson) SBMolecule (class in samson) SBMomentum3 (class in samson) SBMomentumInterval (class in samson) SBNeighborSearch (class in samson) SBNeighborSearchParticleSystem (class in samson) SBNeighborSearchParticleSystemGrid (class in samson) SBNeighborSearchParticleSystemGridPBC (class in samson) SBNeighborSearchParticleSystemPBC (class in samson) SBNode (class in samson) SBNode.Type (class in samson) SBNodeColorScheme (class in samson) SBNodeGroup (class in samson) SBNodeIndexer (class in samson) SBNodeMaterial (class in samson) SBNodeSelector (class in samson) SBNote (class in samson) SBPalette (class in samson) SBPalette.PaletteType (class in samson) SBPaletteDefaultPalette (class in samson) SBPaletteDiverging (class in samson) SBPaletteDivergingHCL (class in samson) SBPaletteFlexibleDivergingHCL (class in samson) SBPaletteQualitative (class in samson) SBPaletteQualitativeHCL (class in samson) SBPaletteSequential (class in samson) SBPaletteSequentialHCL (class in samson) SBParticleSystem (class in samson) SBPath (class in samson) SBPath.AnimationType (class in samson) SBPhysicalIAVector3 (class in samson) SBPhysicalInterval (class in samson) SBPhysicalMatrix33 (class in samson) SBPhysicalMatrix66 (class in samson) SBPhysicalVector3 (class in samson) SBPhysicalVector6 (class in samson) SBPicometerPerSecond3 (class in samson) SBPosition3 (class in samson) SBPositionInterval (class in samson) SBPresentation (class in samson) SBPropertyModel (class in samson) SBProxy (class in samson) SBRadian3 (class in samson) SBRadianPerSecond3 (class in samson) SBRandom (class in samson) SBReferenceIndexer (class in samson) SBReferenceTarget (class in samson) SBRenderPreset (class in samson) SBRenderPreset.AntiAliasingPreset (class in samson) SBRenderPreset.BackgroundImageMode (class in samson) SBRenderPreset.BackgroundType (class in samson) SBRenderPreset.LightingPreset (class in samson) SBRenderPreset.ShadowPreset (class in samson) SBResidue (class in samson) SBResidue.HydrophobicityScale (class in samson) SBResidue.ResidueType (class in samson) SBResidue.SecondaryStructureType (class in samson) SBResidue.SideChainCharge (class in samson) SBResidue.SideChainPolarity (class in samson) SBSegment (class in samson) SBSideChain (class in samson) SBSimulator (class in samson) SBSimulatorParticleSystem (class in samson) SBSpatialDomain (class in samson) SBSpatialTransform (class in samson) SBSquareLength3 (class in samson) SBSquareLengthInterval (class in samson) SBStateUpdater (class in samson) SBStateUpdaterParticleSystem (class in samson) SBStructuralGroup (class in samson) SBStructuralModel (class in samson) SBStructuralModelGrid (class in samson) SBStructuralNode (class in samson) SBStructuralRoot (class in samson) SBTorque3 (class in samson) SBUserPlan (class in samson) SBUserPlan.Type (class in samson) SBUUID (class in samson) SBVector3 (class in samson) SBVector6 (class in samson) SBVelocity3 (class in samson) SBVelocity6 (class in samson) SBVelocityInterval (class in samson) SBVersionNumber (class in samson) SBVisualModel (class in samson) SBVisualPreset (class in samson) SBVisualPresetGroup (class in samson) Sc (samson.SBElement attribute) (samson.SBElement.ElementType attribute) scaleFlag (samson.SBRenderPreset property) scalePasses (samson.SBRenderPreset property) scaleThickness (samson.SBRenderPreset property) Scandium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) SDKVersionNumber (samson.SBProxy property) Se (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Seaborgium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) SEC (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) second (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsSI property) secondaryStructureInformation (samson.SBStructuralModel property) secondaryStructureType (samson.SBResidue property) secondaryStructureTypeString (samson.SBResidue property) secondLightIntensity (samson.SBRenderPreset property) secondLightLatitude (samson.SBRenderPreset property) secondLightLongitude (samson.SBRenderPreset property) secondLightSpecularIntensity (samson.SBRenderPreset property) secondLightSpecularPower (samson.SBRenderPreset property) seed() (samson.SBRandom method) Seesaw (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) Segment (samson.SBNode attribute) (samson.SBNode.Type attribute) segmentName (samson.SBAtom property) selectGroupNodes() (samson.SBDocument method) selectionFilterName (samson.SBVisualPreset property) selectionFilterString (samson.SBVisualPreset property) selectionFlag (samson.SBNode property) Selector (samson.SBClass attribute) (samson.SBClass.Type attribute) selectorClassName (samson.SBVisualPreset property) selectorExtensionUUID (samson.SBVisualPreset property) Selenium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Sequential (samson.SBPalette attribute) (samson.SBPalette.PaletteType attribute) sequentialHCLBlue (samson.SBPaletteDefaultPalette attribute) sequentialHCLBlue2 (samson.SBPaletteDefaultPalette attribute) sequentialHCLBlueGreenYellow (samson.SBPaletteDefaultPalette attribute) sequentialHCLBlueYellow (samson.SBPaletteDefaultPalette attribute) sequentialHCLBlueYellow2 (samson.SBPaletteDefaultPalette attribute) sequentialHCLDarkMint (samson.SBPaletteDefaultPalette attribute) sequentialHCLGray (samson.SBPaletteDefaultPalette attribute) sequentialHCLGreen (samson.SBPaletteDefaultPalette attribute) sequentialHCLGreen2 (samson.SBPaletteDefaultPalette attribute) sequentialHCLGreenYellow (samson.SBPaletteDefaultPalette attribute) sequentialHCLHeat (samson.SBPaletteDefaultPalette attribute) sequentialHCLInferno (samson.SBPaletteDefaultPalette attribute) sequentialHCLLightGray (samson.SBPaletteDefaultPalette attribute) sequentialHCLOslo (samson.SBPaletteDefaultPalette attribute) sequentialHCLPlasma (samson.SBPaletteDefaultPalette attribute) sequentialHCLPurple (samson.SBPaletteDefaultPalette attribute) sequentialHCLPurple2 (samson.SBPaletteDefaultPalette attribute) sequentialHCLPurpleBlue (samson.SBPaletteDefaultPalette attribute) sequentialHCLPurpleOrange (samson.SBPaletteDefaultPalette attribute) sequentialHCLRed (samson.SBPaletteDefaultPalette attribute) sequentialHCLRed2 (samson.SBPaletteDefaultPalette attribute) sequentialHCLRedYellow (samson.SBPaletteDefaultPalette attribute) sequentialHCLTeal (samson.SBPaletteDefaultPalette attribute) sequentialHCLViridis (samson.SBPaletteDefaultPalette attribute) SER (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) SeredaEtAl1994 (samson.SBResidue attribute) (samson.SBResidue.HydrophobicityScale attribute) serialNumber (samson.SBAtom property) setActiveCamera() (samson.SBDocument method) setActiveDocument() (in module samson.SAMSON) setActiveDocumentFilter() (in module samson.SAMSON) setActiveEditor() (in module samson.SAMSON) setActivePresentation() (samson.SBDocument method) setActiveSelectionFilterByName() (in module samson.SAMSON) setActiveStructuralModel() (in module samson.SAMSON) (samson.SBDocument method) setActivityFlag() (samson.SBParticleSystem method) setAppearance() (samson.SBNodeMaterial method) setBackgroundBottomColor() (samson.SBRenderPreset method) setBackgroundTopColor() (samson.SBRenderPreset method) setBondRadius() (samson.SBRenderPreset method) setBusy() (in module samson.SAMSON) setChroma() (samson.SBPaletteDiverging method) (samson.SBPaletteFlexibleDivergingHCL method) (samson.SBPaletteSequential method) setCoarseGrainedColor() (samson.SBAtom method) setCoarseGrainedMass() (samson.SBAtom method) setCoarseGrainedRadius() (samson.SBAtom method) setCoarseGrainedType() (samson.SBAtom method) setColor() (samson.SBLight method) (samson.SBNode method) (samson.SBNodeMaterial method) (samson.SBVisualPreset method) setColorScheme() (samson.SBNode method) (samson.SBNodeMaterial method) setColorSchemeProxy() (samson.SBVisualPreset method) setComment() (samson.SBAtom method) setConstantAtomRadius() (samson.SBRenderPreset method) setDepthOfFieldDistance() (samson.SBRenderPreset method) setE1() (samson.SBPhysicalMatrix33 method) (samson.SBSpatialTransform method) setE2() (samson.SBPhysicalMatrix33 method) (samson.SBSpatialTransform method) setE3() (samson.SBPhysicalMatrix33 method) (samson.SBSpatialTransform method) setE4() (samson.SBSpatialTransform method) setE5() (samson.SBSpatialTransform method) setEmissionColor() (samson.SBNodeMaterial method) setEmpty() (samson.SBSpatialDomain method) setEnergy() (samson.SBConformation method) (samson.SBPath method) setEnergyData() (samson.SBPath method) setEyeDestination() (samson.SBCamera method) setEyePosition() (samson.SBCamera method) setEyeVelocity() (samson.SBCamera method) setFirstLightColor() (samson.SBRenderPreset method) setFogFarDistance() (samson.SBRenderPreset method) setFogNearDistance() (samson.SBRenderPreset method) setForce() (samson.SBConformation method) (samson.SBPath method) setForceData() (samson.SBConformation method) (samson.SBPath method) setGridRadius() (samson.SBRenderPreset method) setGridSpacing() (samson.SBRenderPreset method) setGridThickness() (samson.SBRenderPreset method) setHeadPosition() (samson.SBCamera method) setHue() (samson.SBPaletteDiverging method) (samson.SBPaletteFlexibleDivergingHCL method) (samson.SBPaletteQualitative method) (samson.SBPaletteSequential method) setIdentity() (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBSpatialTransform method) setLuminance() (samson.SBPaletteDiverging method) (samson.SBPaletteFlexibleDivergingHCL method) (samson.SBPaletteSequential method) setMass() (samson.SBParticleSystem method) setMaterial() (samson.SBNode method) setMaterialAppearance() (samson.SBNode method) setMaximumValue() (samson.SBColorSchemePerAttribute_dimensionless method) (samson.SBColorSchemePerAttribute_double method) (samson.SBColorSchemePerAttribute_float method) (samson.SBColorSchemePerAttribute_int method) setMinimumValue() (samson.SBColorSchemePerAttribute_dimensionless method) (samson.SBColorSchemePerAttribute_double method) (samson.SBColorSchemePerAttribute_float method) (samson.SBColorSchemePerAttribute_int method) setMomentum() (samson.SBParticleSystem method) setName() (samson.SBResidue method) setOne() (samson.SBPhysicalVector3 method) setOrientation() (samson.SBMesh method) (samson.SBSpatialTransform method) (samson.SBStructuralModel method) setPalette() (samson.SBNodeColorScheme method) (samson.SBVisualPreset method) setPeriodicBoundaryConditions() (samson.SBDynamicalModel method) setPosition() (samson.SBAtom method) (samson.SBConformation method) (samson.SBLight method) (samson.SBMesh method) (samson.SBParticleSystem method) (samson.SBPath method) (samson.SBSpatialTransform method) (samson.SBStructuralModel method) setPositionData() (samson.SBConformation method) (samson.SBPath method) setPositionOnTetrahedron() (samson.SBAtom method) setPower() (samson.SBLight method) setProgressBarValue() (in module samson.SAMSON) setRadius() (samson.SBLight method) setRecordType() (samson.SBAtom method) setRotationVelocity() (samson.SBCamera method) setScale() (samson.SBMesh method) (samson.SBSpatialTransform method) setSecondLightColor() (samson.SBRenderPreset method) setSelectionFilter() (samson.SBVisualPreset method) setSelectorProxy() (samson.SBVisualPreset method) setShadowOffset() (samson.SBRenderPreset method) setSilhouetteColor() (samson.SBRenderPreset method) setSilhouetteDistanceThreshold() (samson.SBRenderPreset method) setSimulationFlag() (in module samson.SAMSON) setStatusBit() (samson.SBAtom method) setStatusMessage() (in module samson.SAMSON) setSubsurfaceColor() (samson.SBNodeMaterial method) setSubsurfaceRadius() (samson.SBNodeMaterial method) setSYBYLType() (samson.SBAtom method) setTargetDestination() (samson.SBCamera method) setTargetPosition() (samson.SBCamera method) setTargetVelocity() (samson.SBCamera method) setText() (samson.SBFile method) setTime() (samson.SBConformation method) (samson.SBPath method) setTimeData() (samson.SBPath method) setTransform() (samson.SBMesh method) (samson.SBStructuralModel method) setUpVector() (samson.SBCamera method) setUpVectorDestination() (samson.SBCamera method) setVelocity() (samson.SBConformation method) (samson.SBPath method) setVelocityData() (samson.SBConformation method) (samson.SBPath method) setViewportOffset() (samson.SBLabel method) setVisualModelProxy() (samson.SBVisualPreset method) setX() (samson.SBAtom method) setY() (samson.SBAtom method) setZ() (samson.SBAtom method) setZero() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) Sg (samson.SBElement attribute) (samson.SBElement.ElementType attribute) shadowFlag (samson.SBRenderPreset property) shadowMultisamplingFactor (samson.SBRenderPreset property) shadowPreset (samson.SBRenderPreset property) shadowResolution (samson.SBRenderPreset property) shadowSpread (samson.SBRenderPreset property) shadowTransparency (samson.SBRenderPreset property) sheenCoefficient (samson.SBNodeMaterial property) sheenTint (samson.SBNodeMaterial property) shortcut (samson.SBProxy property) showProgressBar() (in module samson.SAMSON) showProperties() (in module samson.SAMSON) shrink() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) Si (samson.SBElement attribute) (samson.SBElement.ElementType attribute) SideChain (samson.SBNode attribute) (samson.SBNode.Type attribute) sideChainCharge (samson.SBResidue property) sideChainChargeString (samson.SBResidue property) sideChainPolarity (samson.SBResidue property) sideChainPolarityString (samson.SBResidue property) siemens (class in samson.SBQuantity) sievert (class in samson.SBQuantity) silhouetteFlag (samson.SBRenderPreset property) silhouetteFogAttenuationFlag (samson.SBRenderPreset property) silhouetteThickness (samson.SBRenderPreset property) silhouetteTransparency (samson.SBRenderPreset property) Silicon (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Silver (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Simulation (samson.SBClass attribute) (samson.SBClass.Category attribute) Simulator (samson.SBNode attribute) (samson.SBNode.Type attribute) SimulatorArticulatedBodySystem (samson.SBNode attribute) (samson.SBNode.Type attribute) SimulatorParticleSystem (samson.SBNode attribute) (samson.SBNode.Type attribute) SimulatorRigidBodySystem (samson.SBNode attribute) (samson.SBNode.Type attribute) simulatorType (samson.SBSimulator property) (samson.SBSimulatorParticleSystem property) sin() (in module samson.SBQuantity) Single (samson.SBBond attribute) (samson.SBBond.BondType attribute) size (samson.SBNodeGroup property) (samson.SBNodeIndexer property) sizeOfUnitSystem (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsDalton property) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsKilocaloriePerMole property) (samson.SBQuantity.unitsSI property) Sm (samson.SBElement attribute) (samson.SBElement.ElementType attribute) smoothingWindowSize (samson.SBPath property) Sn (samson.SBElement attribute) (samson.SBElement.ElementType attribute) snap() (in module samson.SAMSON) Sodium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) SoftShadow (samson.SBRenderPreset attribute) (samson.SBRenderPreset.ShadowPreset attribute) SP (samson.SBAtom attribute) (samson.SBAtom.Hybridization attribute) SP2 (samson.SBAtom attribute) (samson.SBAtom.Hybridization attribute) SP3 (samson.SBAtom attribute) (samson.SBAtom.Hybridization attribute) SP3D (samson.SBAtom attribute) (samson.SBAtom.Hybridization attribute) SP3D2 (samson.SBAtom attribute) (samson.SBAtom.Hybridization attribute) specularCoefficient (samson.SBNodeMaterial property) specularTint (samson.SBNodeMaterial property) speedOfLight (samson.SBConstant attribute) split() (samson.SBPhysicalIAVector3 method) sqrt() (in module samson.SBQuantity) squareAm (class in samson.SBQuantity) squareAmountOfSubstance (class in samson.SBQuantity) squareAngstrom (class in samson.SBQuantity) SquareAntiprismatic (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) squareAttometer (class in samson.SBQuantity) squareCentimeter (class in samson.SBQuantity) squareCm (class in samson.SBQuantity) squareDam (class in samson.SBQuantity) squareDecameter (class in samson.SBQuantity) squareDecimeter (class in samson.SBQuantity) squareDistance (class in samson.SBQuantity) squareDm (class in samson.SBQuantity) squareFemtometer (class in samson.SBQuantity) squareFm (class in samson.SBQuantity) squareHectometer (class in samson.SBQuantity) squareHm (class in samson.SBQuantity) squareIntensity (class in samson.SBQuantity) squareKilometer (class in samson.SBQuantity) squareKm (class in samson.SBQuantity) squareLength (class in samson.SBQuantity) squareLuminousIntensity (class in samson.SBQuantity) squareM (class in samson.SBQuantity) squareMass (class in samson.SBQuantity) squareMeter (class in samson.SBQuantity) squareMicrometer (class in samson.SBQuantity) squareMillimeter (class in samson.SBQuantity) squareMm (class in samson.SBQuantity) squareNanometer (class in samson.SBQuantity) squareNm (class in samson.SBQuantity) squarePicometer (class in samson.SBQuantity) SquarePlanar (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) squarePm (class in samson.SBQuantity) SquarePyramidal (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) squareTemperature (class in samson.SBQuantity) squareTime (class in samson.SBQuantity) squareUm (class in samson.SBQuantity) squareYm (class in samson.SBQuantity) squareYoctometer (class in samson.SBQuantity) squareZeptometer (class in samson.SBQuantity) squareZm (class in samson.SBQuantity) sr (class in samson.SBQuantity) Sr (samson.SBElement attribute) (samson.SBElement.ElementType attribute) SRGBfromCIELab() (samson.SBColor static method) SRGBfromCIEXYZ() (samson.SBColor static method) SRGBfromCylindricalCIELab() (samson.SBColor static method) SRGBfromCylindricalCIELuv() (samson.SBColor static method) SRGBfromHCL() (samson.SBColor static method) SRGBfromHSV() (samson.SBColor static method) SRGBfromRGB() (samson.SBColor static method) SSAOFlag (samson.SBRenderPreset property) SSAOKernelSize (samson.SBRenderPreset property) SSAORadius (samson.SBRenderPreset property) SSAORandomization (samson.SBRenderPreset property) SSAOStrength (samson.SBRenderPreset property) Standard (samson.SBUserPlan attribute) (samson.SBUserPlan.Type attribute) Starter (samson.SBUserPlan attribute) (samson.SBUserPlan.Type attribute) startSimulation() (in module samson.SAMSON) startTimer() (in module samson.SAMSON) StateUpdater (samson.SBNode attribute) (samson.SBNode.Type attribute) StateUpdaterArticulatedBodySystem (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) StateUpdaterParticleSystem (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) StateUpdaterRigidBodySystem (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) stateUpdaterType (samson.SBStateUpdater property) statusBit (samson.SBBond property) (samson.SBStructuralGroup property) stepDuration (samson.SBPath property) stepSize (samson.SBStateUpdater property) steradian (class in samson.SBQuantity) stop() (samson.SBCamera method) stopSimulation() (in module samson.SAMSON) stopTimer() (in module samson.SAMSON) str() (samson.SBPhysicalIAVector3 method) (samson.SBPhysicalInterval method) (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) (samson.SBPhysicalVector3 method) (samson.SBPhysicalVector6 method) (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) (samson.SBSpatialDomain method) (samson.SBSpatialTransform method) stride (samson.SBPath property) Strontium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) StructuralGroup (samson.SBNode attribute) (samson.SBNode.Type attribute) structuralID (samson.SBStructuralGroup property) StructuralModel (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelConformation (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelFactory (samson.SBClass attribute) (samson.SBClass.Type attribute) StructuralModelNode (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelNodeAtom (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelNodeBackbone (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelNodeBond (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelNodeChain (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelNodeGroup (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelNodeHydrogenBond (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelNodeHydrogenBondGroup (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelNodeMolecule (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelNodeResidue (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelNodeRoot (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelNodeSegment (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelNodeSideChain (samson.SBNode attribute) (samson.SBNode.Type attribute) StructuralModelPath (samson.SBNode attribute) (samson.SBNode.Type attribute) structuralSignalFlag (samson.SBStructuralModel property) substructureName (samson.SBAtom property) substructureSequenceNumber (samson.SBAtom property) substructureSequenceNumberString (samson.SBAtom property) subsurfaceAnisotropy (samson.SBNodeMaterial property) subsurfaceCoefficient (samson.SBNodeMaterial property) subsurfaceIOR (samson.SBNodeMaterial property) Sulfur (samson.SBElement attribute) (samson.SBElement.ElementType attribute) sumOfFormalCharges (samson.SBNode property) sumOfPartialCharges (samson.SBNode property) Sv (class in samson.SBQuantity) swap() (samson.SBPhysicalVector3 method) swapColumns() (samson.SBPhysicalMatrix33 method) swapRows() (samson.SBPhysicalMatrix33 method) symbol (samson.SBElement property) symmetrize() (samson.SBPhysicalMatrix66 method) T T (class in samson.SBQuantity) Ta (samson.SBElement attribute) (samson.SBElement.ElementType attribute) tan() (in module samson.SBQuantity) Tantalum (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Tb (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Tc (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Te (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Technetium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Tellurium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) temperature (class in samson.SBQuantity) temperatureFactor (samson.SBAtom property) Tennessine (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Terbium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) tesla (class in samson.SBQuantity) Tetrahedral (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) text (samson.SBAction property) (samson.SBLabel property) (samson.SBNote property) Th (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Thallium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Thorium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) THR (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) Thulium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) thumbnailFileName (samson.SBAsset property) Ti (samson.SBElement attribute) (samson.SBElement.ElementType attribute) time (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) Tin (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Titanium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) titleInformation (samson.SBStructuralModel property) Tl (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Tm (samson.SBElement attribute) (samson.SBElement.ElementType attribute) toDebugString() (samson.SBQuantity.unitsAU method) (samson.SBQuantity.unitsDalton method) (samson.SBQuantity.unitsElectronvolt method) (samson.SBQuantity.unitsKilocaloriePerMole method) (samson.SBQuantity.unitsSI method) toggleSimulation() (in module samson.SAMSON) toHCL() (samson.SBColor static method) toHSV() (samson.SBColor static method) toList() (samson.SBColor method) tooltip (samson.SBProxy property) topView() (samson.SBCamera method) toQuaternion() (samson.SBPhysicalMatrix33 method) toRotationVector() (samson.SBPhysicalMatrix33 method) toString() (samson.SBRenderPreset method) Toxicology (samson.SBClass attribute) (samson.SBClass.Category attribute) trace() (samson.SBPhysicalMatrix33 method) transform() (samson.SBCamera method) (samson.SBMesh method) (samson.SBStructuralModel method) transformAcceleration() (samson.SBSpatialTransform method) transformForce() (samson.SBSpatialTransform method) transformInertia() (samson.SBSpatialTransform method) transformInertiaLeft() (samson.SBSpatialTransform method) transformInertiaRight() (samson.SBSpatialTransform method) transformInverseInertia() (samson.SBSpatialTransform method) transformInverseInertiaLeft() (samson.SBSpatialTransform method) transformInverseInertiaRight() (samson.SBSpatialTransform method) transformInverseInertiaTransposeRight() (samson.SBSpatialTransform method) transformPoint() (samson.SBSpatialTransform method) transformVelocity() (samson.SBSpatialTransform method) TransitionMetal (samson.SBElement attribute) (samson.SBElement.MetalSubcategory attribute) translate() (samson.SBCamera method) (samson.SBMesh method) (samson.SBStructuralModel method) transmissionCoefficient (samson.SBNodeMaterial property) transmissionIOR (samson.SBNodeMaterial property) transmissionRoughness (samson.SBNodeMaterial property) transparency (samson.SBNode property) (samson.SBNodeMaterial property) transpose() (samson.SBPhysicalMatrix33 method) (samson.SBPhysicalMatrix66 method) TricappedTrigonalPrismatic (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) trigger() (samson.SBAction method) TrigonalBipyramidal (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) TrigonalPlanar (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) TrigonalPrismatic (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) TrigonalPyramidal (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) Triple (samson.SBBond attribute) (samson.SBBond.BondType attribute) TRP (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) trunc() (in module samson.SBQuantity) Ts (samson.SBElement attribute) (samson.SBElement.ElementType attribute) TShaped (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) Tungsten (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Tutorial (samson.SBClass attribute) (samson.SBClass.Type attribute) type (samson.SBAttribute property) (samson.SBElement property) (samson.SBNode property) (samson.SBPalette property) (samson.SBProxy property) (samson.SBUserPlan property) typeString (samson.SBNode property) TYR (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) U u (class in samson.SBQuantity) U (samson.SBElement attribute) (samson.SBElement.ElementType attribute) (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) uA (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) ucd (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) ug (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) uK (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) um (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) umol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Un (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Undefined (samson.SBAtom attribute) (samson.SBAtom.Geometry attribute) (samson.SBBond attribute) (samson.SBBond.BondType attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) UndefinedSideChainCharge (samson.SBResidue attribute) (samson.SBResidue.SideChainCharge attribute) UndefinedSideChainPolarity (samson.SBResidue attribute) (samson.SBResidue.SideChainPolarity attribute) undo() (in module samson.SAMSON) unifiedAtomicMassUnit (class in samson.SBQuantity) unitsAU (class in samson.SBQuantity) unitsDalton (class in samson.SBQuantity) unitsElectronvolt (class in samson.SBQuantity) unitsKilocaloriePerMole (class in samson.SBQuantity) unitsSI (class in samson.SBQuantity) Unknown (samson.SBAtom attribute) (samson.SBAtom.Hybridization attribute) (samson.SBElement attribute) (samson.SBElement.ElementType attribute) (samson.SBElement.MetalSubcategory attribute) Unstructured (samson.SBResidue attribute) (samson.SBResidue.SecondaryStructureType attribute) Ununhexium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Ununoctium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Ununpentium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Ununquadium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Ununseptium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Ununtrium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) update() (samson.SBStructuralModelGrid method) updateInteractions() (samson.SBInteractionModel method) updateNeighborLists() (samson.SBNeighborSearchParticleSystem method) (samson.SBNeighborSearchParticleSystemPBC method) updateState() (samson.SBCamera method) (samson.SBPath method) (samson.SBSimulator method) (samson.SBStateUpdater method) updateStructuralNodes() (samson.SBDynamicalModel method) updateText() (samson.SBLabel method) upperBound() (samson.SBPhysicalIAVector3 method) Uranium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) us (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Uuh (samson.SBElement attribute) (samson.SBElement.ElementType attribute) UUID (samson.SBAction property) (samson.SBAsset property) (samson.SBFile property) (samson.SBFolder property) (samson.SBProxy property) (samson.SBRenderPreset property) Uuo (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Uup (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Uuq (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Uus (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Uut (samson.SBElement attribute) (samson.SBElement.ElementType attribute) V V (class in samson.SBQuantity) (samson.SBElement attribute) (samson.SBElement.ElementType attribute) VAL (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) value (samson.SBAnimation.Category property) (samson.SBAtom.Geometry property) (samson.SBAtom.Hybridization property) (samson.SBAttribute.Type property) (samson.SBBond.BondType property) (samson.SBClass.Category property) (samson.SBClass.Type property) (samson.SBElement.ElementType property) (samson.SBElement.MetalSubcategory property) (samson.SBNode.Type property) (samson.SBPalette.PaletteType property) (samson.SBPath.AnimationType property) (samson.SBPhysicalIAVector3 property) (samson.SBPhysicalInterval property) (samson.SBPhysicalMatrix33 property) (samson.SBPhysicalMatrix66 property) (samson.SBPhysicalVector3 property) (samson.SBPhysicalVector6 property) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsDalton property) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsKilocaloriePerMole property) (samson.SBQuantity.unitsSI property) (samson.SBRenderPreset.AntiAliasingPreset property) (samson.SBRenderPreset.BackgroundImageMode property) (samson.SBRenderPreset.BackgroundType property) (samson.SBRenderPreset.LightingPreset property) (samson.SBRenderPreset.ShadowPreset property) (samson.SBResidue.HydrophobicityScale property) (samson.SBResidue.ResidueType property) (samson.SBResidue.SecondaryStructureType property) (samson.SBResidue.SideChainCharge property) (samson.SBResidue.SideChainPolarity property) (samson.SBUserPlan.Type property) Vanadium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) vanDerWaalsRadius (samson.SBAtom property) (samson.SBElement property) velocity (class in samson.SBQuantity) versionNumber (samson.SBProxy property) visibilityFlag (samson.SBNode property) Visualization (samson.SBClass attribute) (samson.SBClass.Category attribute) VisualModel (samson.SBClass attribute) (samson.SBClass.Type attribute) (samson.SBNode attribute) (samson.SBNode.Type attribute) visualModelClassName (samson.SBVisualPreset property) visualModelExtensionUUID (samson.SBVisualPreset property) VisualModelFactory (samson.SBClass attribute) (samson.SBClass.Type attribute) VisualModelMesh (samson.SBNode attribute) (samson.SBNode.Type attribute) volt (class in samson.SBQuantity) voltage (class in samson.SBQuantity) voltPerMeter (class in samson.SBQuantity) volume (class in samson.SBQuantity) volume() (samson.SBPhysicalIAVector3 method) VPerM (class in samson.SBQuantity) W W (class in samson.SBQuantity) (samson.SBElement attribute) (samson.SBElement.ElementType attribute) waterFlag (samson.SBAtom property) watt (class in samson.SBQuantity) Wb (class in samson.SBQuantity) weber (class in samson.SBQuantity) white (samson.SBColor attribute) White (samson.SBRenderPreset attribute) (samson.SBRenderPreset.BackgroundType attribute) WimleyWhite1996 (samson.SBResidue attribute) (samson.SBResidue.HydrophobicityScale attribute) X x (samson.SBPhysicalIAVector3 property) (samson.SBPhysicalVector3 property) XAA (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) Xe (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Xenon (samson.SBElement attribute) (samson.SBElement.ElementType attribute) XLE (samson.SBResidue attribute) (samson.SBResidue.ResidueType attribute) Y Y (samson.SBElement attribute) (samson.SBElement.ElementType attribute) y (samson.SBPhysicalIAVector3 property) (samson.SBPhysicalVector3 property) yA (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Yb (samson.SBElement attribute) (samson.SBElement.ElementType attribute) ycd (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) yellow (samson.SBColor attribute) yg (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsDalton property) (samson.SBQuantity.unitsSI property) ygPmPerFs (class in samson.SBQuantity) ygSquarePm (class in samson.SBQuantity) yK (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) ym (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) ymol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) yoctoampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) yoctocandela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) yoctogram (class in samson.SBQuantity) (samson.SBQuantity.unitsAU property) (samson.SBQuantity.unitsDalton property) (samson.SBQuantity.unitsSI property) yoctogramPicometerPerFemtosecond (class in samson.SBQuantity) yoctogramSquarePicometer (class in samson.SBQuantity) yoctokelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) yoctometer (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) yoctomole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) yoctosecond (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) ys (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Ytterbium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Yttrium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Z z (samson.SBPhysicalIAVector3 property) (samson.SBPhysicalVector3 property) zA (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) zC (class in samson.SBQuantity) zcd (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) zeptoampere (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) zeptocandela (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) zeptocoulomb (class in samson.SBQuantity) zeptogram (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) zeptojoule (class in samson.SBQuantity) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsSI property) zeptokelvin (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) zeptometer (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) zeptomole (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) zeptosecond (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) zero() (samson.SBSpatialTransform static method) zg (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) ZhaoLondon2006 (samson.SBResidue attribute) (samson.SBResidue.HydrophobicityScale attribute) Zinc (samson.SBElement attribute) (samson.SBElement.ElementType attribute) Zirconium (samson.SBElement attribute) (samson.SBElement.ElementType attribute) zJ (class in samson.SBQuantity) (samson.SBQuantity.unitsElectronvolt property) (samson.SBQuantity.unitsSI property) zK (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) zm (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) zmol (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property) Zn (samson.SBElement attribute) (samson.SBElement.ElementType attribute) zoomIn() (samson.SBCamera method) zoomOut() (samson.SBCamera method) zoomTo() (samson.SBCamera method) Zr (samson.SBElement attribute) (samson.SBElement.ElementType attribute) zs (class in samson.SBQuantity) (samson.SBQuantity.unitsSI property)