Class SBMStructuralModelNodeSideChain

ClassList > SBMStructuralModelNodeSideChain

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• #include <SBMStructuralModelNodeSideChain.hpp>

Inherits the following classes: SBMStructuralModelNodeGroup

Public Types inherited from SBDDataGraphNode

See SBDDataGraphNode

Type	Name
enum	RenderingPass The rendering pass.
enum	Type The type of the data graph node.

Public Functions

Type	Name
	SBMStructuralModelNodeSideChain ()
	SBMStructuralModelNodeSideChain (const std::string & n)
	SB_DECLARE_DATA (SBMStructuralModelNodeSideChain)
virtual bool	addChild (SBNode * node, SBNode * nextNode=nullptr) override Adds a child to the side chain.
virtual bool	canAddChildType (SBNode::Type nodeType) override const Returns whether this node can add a node with type nodeType as a child.
virtual bool	canHaveDescendantType (SBNode::Type nodeType) override const Returns whether this node can have a node with type nodeType as a descendant.
virtual SBMStructuralModelNodeSideChain *	clone () override Returns a copy of the node and its descendants.
SBAtom *	getBetaCarbon () Returns the beta carbon of an amino acid side chain.
SBAtom *	getDeltaAtom () Returns the delta atom of an amino acid side chain.
SBAtom *	getEpsilonAtom () Returns the epsilon atom of an amino acid side chain.
SBAtom *	getEtaAtom () Returns the eta atom of an amino acid side chain.
SBAtom *	getGammaAtom () Returns the gamma atom of an amino acid side chain.
virtual SBDDataGraphNode::Type	getType () override const Returns the node type (returns SBNode::SideChain )
SBAtom *	getZetaAtom () Returns the zeta atom of an amino acid side chain.
virtual bool	removeChild (SBNode * node) override Removes a child from the side chain.
virtual	~SBMStructuralModelNodeSideChain ()

Public Functions inherited from SBMStructuralModelNodeGroup

See SBMStructuralModelNodeGroup

Type	Name
	SBMStructuralModelNodeGroup () Builds a base model.
	SBMStructuralModelNodeGroup (const std::string & n)
	SB_DECLARE_DATA (SBMStructuralModelNodeGroup)
	SB_NODE_GETTER_0 (std::string, GetComment)
	SB_NODE_GETTER_0 (std::string, GetStatusBit)
	SB_NODE_GETTER_0 (int, GetStructuralID)
	SB_NODE_PREDICATE_0 (HasComment)
	SB_NODE_PREDICATE_0 (HasStatusBit)
	SB_NODE_PREDICATE_0 (HasStructuralID)
virtual bool	addChild (SBNode * node, SBNode * nextNode=nullptr) override Adds a child to the node.
virtual bool	canAddChild (const SBNode * node, const SBNode * nextNode=nullptr) override const Returns whether this node can add node as a child.
virtual bool	canAddChildType (SBNode::Type nodeType) override const Returns whether this node can add a node with type nodeType as a child.
virtual bool	canHaveDescendantType (SBNode::Type nodeType) override const Returns whether this node can have a node with type nodeType as a descendant.
void	clearComment () Clears the comment.
void	clearStatusBit () Clears the status bit.
void	clearStructuralID () Clears the structural group's id.
virtual SBMStructuralModelNodeGroup *	clone () override Returns a copy of the node and its descendants.
virtual void	forEachNodeDepthFirst (void(*)(SBDDataGraphNode *node) action) override Performs an action on each node.
virtual void	forEachNodeDepthFirst (SBCClass * object, void(SBCClass::*)(SBDDataGraphNode *node) action) override Performs an action on each node.
virtual SBPointerList< SBMStructuralModelNode > const *	getChildren () override const Returns the list of child nodes.
std::string const &	getComment () const Returns the comment.
virtual SBQuantity::mass	getMolecularWeight () override Returns the molecular weight.
virtual void	getNodes (SBNodeIndexer & nodeIndexer, SBNode::Type nodeType, bool selectedNodesOnly=false, const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) override const Collects nodes into nodeIndexer , based on anodeType , a selection status and avisitPredicate , with or without dependencies.
virtual void	getNodes (SBNodeIndexer & nodeIndexer, const SBNodePredicate & selectionPredicate=SBDDataGraphNode::All(), const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) override const Collects nodes into nodeIndexer , based on aselectionPredicate and avisitPredicate , with or without dependencies.
virtual unsigned int	getNumberOfAtoms () override Returns the number of atoms.
virtual unsigned int	getNumberOfCarbons () override Returns the number of carbons.
virtual unsigned int	getNumberOfChains () override Returns the number of chains.
virtual unsigned int	getNumberOfCoarseGrainedAtoms () override Returns the number of coarse-grained atoms.
virtual unsigned int	getNumberOfHydrogens () override Returns the number of hydrogens.
virtual unsigned int	getNumberOfMolecules () override Returns the number of molecules.
virtual unsigned int	getNumberOfNitrogens () override Returns the number of nitrogens.
virtual unsigned int	getNumberOfOtherAtoms () override Returns the number of other atoms.
virtual unsigned int	getNumberOfOxygens () override Returns the number of oxygens.
virtual unsigned int	getNumberOfResidues () override Returns the number of residues.
virtual unsigned int	getNumberOfSegments () override Returns the number of segments.
virtual unsigned int	getNumberOfStructuralGroups () override Returns the number of structural groups.
virtual unsigned int	getNumberOfSulfurs () override Returns the number of sulfurs.
std::string const &	getStatusBit () const Returns the status bit.
int const &	getStructuralID () const Returns the structural group's id.
virtual int	getSumOfFormalCharges () override Returns the sum of formal charges.
virtual float	getSumOfPartialCharges () override Returns the sum of partial charges.
virtual SBDDataGraphNode::Type	getType () override const Returns the node type ( SBNode::StructuralGroup )
bool	hasComment () const Returns true when the comment is set.
virtual bool	hasNode (SBNode::Type nodeType, bool selectedNodesOnly=false, const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) override const Checks for nodes based on a nodeType , a selection status and avisitPredicate , with or without dependencies.
virtual bool	hasNode (const SBNodePredicate & selectionPredicate=SBDDataGraphNode::All(), const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) override const Checks for nodes based on a selectionPredicate and avisitPredicate , with or without dependencies.
bool	hasStatusBit () const Returns true when the status bit is set.
bool	hasStructuralID () const Returns true when the structural group's id is set.
bool	isMonatomicIon () Returns true if the structural group is a monatomic ion.
virtual bool	isSerializable () override const Returns true.
bool	isWater () Returns true if the structural group is a water molecule.
virtual void	onBaseEvent (SBEvent * event)
virtual void	print (unsigned int offset=0) override const Prints debugging information.
virtual bool	removeChild (SBNode * node) override Removes a child from the node.
virtual void	serialize (SBCSerializer * serializer, const SBNodeIndexer & nodeIndexer, const SBVersionNumber & sdkVersionNumber=SB_SDK_VERSION_NUMBER, const SBVersionNumber & classVersionNumber=SBVersionNumber(1, 0, 0)) override const Serializes the node.
void	setComment (const std::string & comment) Sets the comment.
virtual void	setName (const std::string & name) override Sets the name of the structural group.
void	setStatusBit (const std::string & statusBit) Sets the status bit.
void	setStructuralID (const int & groupID) Sets the structural group's id.
virtual void	unserialize (SBCSerializer * serializer, const SBNodeIndexer & nodeIndexer, const SBVersionNumber & sdkVersionNumber=SB_SDK_VERSION_NUMBER, const SBVersionNumber & classVersionNumber=SBVersionNumber(1, 0, 0)) override Unserializes the node.
virtual	~SBMStructuralModelNodeGroup ()

Public Functions inherited from SBMStructuralModelNode

See SBMStructuralModelNode

Type	Name
	SB_DECLARE_DATA (SBMStructuralModelNode)
virtual SBMStructuralModelNode *	clone () override Returns a copy of the node and its descendants.
void	connectStructuralSignalToSlot (SBCReferenceTarget * referenceTarget, void(SBCReferenceTarget::*)(SBStructuralEvent *) functionPointer, SBStructuralEvent::Type eventType=SBStructuralEvent::Type::Any, SBCReferenceTarget * nextReferenceTarget=0, void(SBCReferenceTarget::*)(SBStructuralEvent *) nextFunctionPointer=0)
void	disconnectStructuralSignalFromSlot (SBCReferenceTarget * referenceTarget, void(SBCReferenceTarget::*)(SBStructuralEvent *) functionPointer, SBStructuralEvent::Type eventType=SBStructuralEvent::Type::Any)
virtual void	forEachNodeDepthFirst (void(*)(SBDDataGraphNode *node) action) override Performs an action on each node.
virtual void	forEachNodeDepthFirst (SBCClass * object, void(SBCClass::*)(SBDDataGraphNode *node) action) override Performs an action on each node.
void	forEachStructuralNodeBreadthFirst (void(*)(SBMStructuralModelNode *node) action)
void	forEachStructuralNodeBreadthFirst (SBCClass * object, void(SBCClass::*)(SBMStructuralModelNode *node) action)
void	forEachStructuralNodeDepthFirst (void(*)(SBMStructuralModelNode *node) action)
void	forEachStructuralNodeDepthFirst (SBCClass * object, void(SBCClass::*)(SBMStructuralModelNode *node) action)
void	getAllStructuralNodesBreadthFirstBottomUp (std::vector< SBMStructuralModelNode * > & nodeIndexer)
void	getAllStructuralNodesBreadthFirstTopDown (std::vector< SBMStructuralModelNode * > & nodeIndexer)
void	getAllStructuralNodesDepthFirst (std::vector< SBMStructuralModelNode * > & nodeIndexer)
virtual SBPointerList< SBMStructuralModelNode > const *	getChildren () const Returns the list of child nodes.
void	getInternalStructuralNodesBreadthFirstBottomUp (std::vector< SBMStructuralModelNode * > & nodeIndexer)
void	getInternalStructuralNodesBreadthFirstTopDown (std::vector< SBMStructuralModelNode * > & nodeIndexer)
void	getInternalStructuralNodesDepthFirst (std::vector< SBMStructuralModelNode * > & nodeIndexer)
void	getLeafStructuralNodesBreadthFirstBottomUp (std::vector< SBMStructuralModelNode * > & nodeIndexer)
void	getLeafStructuralNodesBreadthFirstTopDown (std::vector< SBMStructuralModelNode * > & nodeIndexer)
void	getLeafStructuralNodesDepthFirst (std::vector< SBMStructuralModelNode * > & nodeIndexer)
virtual bool	getLockedFlag () override const Returns the locked flag of the model.
virtual unsigned int	getMaximumTransparency () override const Returns the maximum transparency.
virtual unsigned int	getMinimumOpacity () override const Returns the minimum opacity.
SBMStructuralModel *	getModel () const
SBMStructuralModelNode *	getNextStructuralNode () const
virtual void	getNodes (SBNodeIndexer & nodeIndexer, SBNode::Type nodeType, bool selectedNodesOnly=false, const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) override const Collects nodes into nodeIndexer , based on anodeType , a selection status and avisitPredicate , with or without dependencies.
virtual void	getNodes (SBNodeIndexer & nodeIndexer, const SBNodePredicate & selectionPredicate=SBDDataGraphNode::All(), const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) override const Collects nodes into nodeIndexer , based on aselectionPredicate and avisitPredicate , with or without dependencies.
virtual unsigned int	getOpacity () override const Returns the opacity.
SBMStructuralModelNode *	getPreviousStructuralNode () const
void	getStructuralNodesBreadthFirst (std::vector< SBMStructuralModelNode * > & nodeVectorTopDown, std::vector< SBMStructuralModelNode * > & nodeVectorBottomUp, bool(*)(SBMStructuralModelNode *) selectionRule)
void	getStructuralNodesBreadthFirstBottomUp (std::vector< SBMStructuralModelNode * > & nodeIndexer, bool(*)(SBMStructuralModelNode *) selectionRule)
void	getStructuralNodesBreadthFirstTopDown (std::vector< SBMStructuralModelNode * > & nodeIndexer, bool(*)(SBMStructuralModelNode *) selectionRule)
void	getStructuralNodesDepthFirst (std::vector< SBMStructuralModelNode * > & nodeIndexer, bool(*)(SBMStructuralModelNode *) selectionRule)
bool	getStructuralSignalFlag () const Returns true when the node can send structural signals.
virtual unsigned int	getTransparency () override const Returns the transparency.
virtual SBDDataGraphNode::Type	getType () override const Returns the type of the data graph node.
virtual bool	hasNode (SBNode::Type nodeType, bool selectedNodesOnly=false, const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) override const Checks for nodes based on a nodeType , a selection status and avisitPredicate , with or without dependencies.
virtual bool	hasNode (const SBNodePredicate & selectionPredicate=SBDDataGraphNode::All(), const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) override const Checks for nodes based on a selectionPredicate and avisitPredicate , with or without dependencies.
virtual bool	isLocked () override const Returns whether the node is locked (because of the model)
virtual bool	isSerializable () override const Returns true.
virtual void	print (unsigned int offset=0) override const Prints debugging information.
virtual void	serialize (SBCSerializer * serializer, const SBNodeIndexer & nodeIndexer, const SBVersionNumber & sdkVersionNumber=SB_SDK_VERSION_NUMBER, const SBVersionNumber & classVersionNumber=SBVersionNumber(1, 0, 0)) override const Serializes the node.
void	setStructuralSignalFlag (bool structuralSignalFlag) Sets whether the node can send structural signals.
bool	structuralSignalIsConnectedToSlot (SBCReferenceTarget * referenceTarget, void(SBCReferenceTarget::*)(SBStructuralEvent *) functionPointer, SBStructuralEvent::Type eventType=SBStructuralEvent::Type::Any) const
virtual void	unserialize (SBCSerializer * serializer, const SBNodeIndexer & nodeIndexer, const SBVersionNumber & sdkVersionNumber=SB_SDK_VERSION_NUMBER, const SBVersionNumber & classVersionNumber=SBVersionNumber(1, 0, 0)) override Unserializes the node.
virtual	~SBMStructuralModelNode ()

Public Functions inherited from SBMModelNode

See SBMModelNode

Type	Name
	SB_DECLARE_DATA (SBMModelNode)
virtual SBMModelNode *	clone () override Returns a copy of the node and its descendants.
virtual SBDDataGraphNode::Type	getType () override const Returns the type of the data graph node.
virtual bool	isSerializable () override const Returns true.
virtual void	serialize (SBCSerializer * serializer, const SBNodeIndexer & nodeIndexer, const SBVersionNumber & sdkVersionNumber=SB_SDK_VERSION_NUMBER, const SBVersionNumber & classVersionNumber=SBVersionNumber(1, 0, 0)) override const Serializes the node.
virtual void	unserialize (SBCSerializer * serializer, const SBNodeIndexer & nodeIndexer, const SBVersionNumber & sdkVersionNumber=SB_SDK_VERSION_NUMBER, const SBVersionNumber & classVersionNumber=SBVersionNumber(1, 0, 0)) override Unserializes the node.

Public Functions inherited from SBDDataGraphNode

See SBDDataGraphNode

Type	Name
	SB_DECLARE_DATA (SBDDataGraphNode)
virtual bool	addChild (SBDDataGraphNode * node, SBDDataGraphNode * nextNode=nullptr) Adds a child to the node.
bool	addMaterial (SBDDataGraphNodeMaterial * material) Adds a material.
bool	baseSignalIsConnectedToSlot (SBCReferenceTarget * referenceTarget, void(SBCReferenceTarget::*)(SBBaseEvent *) functionPointer) const Returns true when the base signal is connected to a slot.
virtual bool	canAddChild (const SBDDataGraphNode * node, const SBDDataGraphNode * nextNode=nullptr) const Returns whether this node can add node as a child.
virtual bool	canAddChildType (SBDDataGraphNode::Type nodeType) const Returns whether this node can add a node with type nodeType as a child.
bool	canAddMaterial () const Returns whether can add a material to the node based on its type.
virtual bool	canHaveDescendantType (SBDDataGraphNode::Type nodeType) const Returns whether this node can have a node with type nodeType as a descendant.
virtual SBDDataGraphNode *	clone () Returns a copy of the node and its descendants.
void	connectBaseSignalToSlot (SBCReferenceTarget * referenceTarget, void(SBCReferenceTarget::*)(SBBaseEvent *) functionPointer, SBCReferenceTarget * nextReferenceTarget=0, void(SBCReferenceTarget::*)(SBBaseEvent *) nextFunctionPointer=0) Connects the base signal to a slot.
unsigned int	countNodes (SBDDataGraphNode::Type nodeType, bool selectedNodesOnly=false, const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const Counts nodes based on a nodeType , a selection status and avisitPredicate , with or without dependencies.
unsigned int	countNodes (const SBNodePredicate & selectionPredicate=SBDDataGraphNode::All(), const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const Counts nodes based on a selectionPredicate and avisitPredicate , with or without dependencies.
void	create () Creates the node.
bool	descendsFrom (const SBDDataGraphNode * node) const Returns true if and only if this node is node , or descends from it.
bool	descendsFrom (const SBNodeIndexer & nodeIndexer) const Returns true if and only if this node is one of the nodes of the nodeIndexer , or descends from one of them.
bool	descendsFrom (SBPointerIndexer< SBDDataGraphNode > * nodePointerIndexer) const Returns true if and only if this node is one of the nodes of the nodePointerIndexer , or descends from one of them.
void	disconnectBaseSignalFromSlot (SBCReferenceTarget * referenceTarget, void(SBCReferenceTarget::*)(SBBaseEvent *) functionPointer) Disconnects the base signal from a slot.
virtual void	display (RenderingPass renderingPass) Displays the node.
virtual void	display () Displays the node (deprecated)
virtual void	displayForSelection () Displays the node for selection purposes (deprecated)
virtual void	displayForShadow () Displays the node for shadowing purposes (deprecated)
void	erase () Erases the node.
virtual void	forEachNodeDepthFirst (void(*)(SBDDataGraphNode *node) action) Performs an action on each node.
virtual void	forEachNodeDepthFirst (SBCClass * object, void(SBCClass::*)(SBDDataGraphNode *node) action) Performs an action on each node.
virtual unsigned int	getDefaultOpacity () const Returns the default opacity.
virtual unsigned int	getDefaultTransparency () const Returns the default transparency.
SBDDocument *	getDocument () const Returns the document the node belongs to.
virtual unsigned int	getFlags () const Returns the flags.
virtual std::string	getHierarchyString (const std::string & separator=" / ", bool includeNodeType=false) const Returns a string with hierarchical information on the node and its parents names.
bool	getHighlightingFlag () const Returns the highlighting flag.
virtual unsigned int	getInheritedFlags () const Returns the inherited flags.
float	getInheritedOpacity () const Returns the cumulative opacity, when taking into account the ascendants.
float	getInheritedTransparency () const Returns the cumulative transparency, when taking into account the ascendants.
virtual bool	getLockedFlag () const Returns the locked flag.
SBDDataGraphNodeMaterial *	getMaterial () const Returns the material.
SBDDataGraphNode *	getMaterialOwner () const Returns the node whose material is inherited.
virtual unsigned int	getMaximumOpacity () const Returns the maximum opacity.
virtual unsigned int	getMaximumTransparency () const Returns the maximum transparency.
virtual unsigned int	getMinimumOpacity () const Returns the minimum opacity.
virtual unsigned int	getMinimumTransparency () const Returns the minimum transparency.
virtual SBQuantity::mass	getMolecularWeight () Returns the molecular weight.
virtual std::string const &	getName () const Returns the name of the node.
SBDDataGraphNode *	getNextNode () const Returns the pointer to the next node in the children of the node's parent.
SBDDataGraphNode *	getNextNode (SBDDataGraphNode::Type nodeType) const Returns the pointer to the next node with type nodeType in the children of the node's parent.
unsigned int	getNodeIndex () const Returns the node index (unique in the whole data graph, but non-persistent)
SBUUID	getNodeUUID () const Returns the node UUID.
virtual void	getNodes (SBNodeIndexer & nodeIndexer, SBDDataGraphNode::Type nodeType, bool selectedNodesOnly=false, const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const Collects nodes into nodeIndexer , based on anodeType , a selection status and avisitPredicate , with or without dependencies.
virtual void	getNodes (SBNodeIndexer & nodeIndexer, const SBNodePredicate & selectionPredicate=SBDDataGraphNode::All(), const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const Collects nodes into nodeIndexer , based on aselectionPredicate and avisitPredicate , with or without dependencies.
virtual unsigned int	getNumberOfAtoms () Returns the number of atoms.
virtual unsigned int	getNumberOfCarbons () Returns the number of carbons.
virtual unsigned int	getNumberOfChains () Returns the number of chains.
virtual unsigned int	getNumberOfCoarseGrainedAtoms () Returns the number of coarse-grained atoms.
virtual unsigned int	getNumberOfHydrogens () Returns the number of hydrogens.
virtual unsigned int	getNumberOfMolecules () Returns the number of molecules.
virtual unsigned int	getNumberOfNitrogens () Returns the number of nitrogens.
virtual unsigned int	getNumberOfOtherAtoms () Returns the number of other atoms.
virtual unsigned int	getNumberOfOxygens () Returns the number of oxygens.
virtual unsigned int	getNumberOfResidues () Returns the number of residues.
virtual unsigned int	getNumberOfSegments () Returns the number of segments.
virtual unsigned int	getNumberOfStructuralGroups () Returns the number of structural groups.
virtual unsigned int	getNumberOfStructuralModels () Returns the number of structural models.
virtual unsigned int	getNumberOfSulfurs () Returns the number of sulfurs.
virtual unsigned int	getOpacity () const Returns the opacity.
virtual unsigned int	getOpacitySingleStep () const Returns the opacity single step.
virtual std::string	getOpacitySuffix () const Returns the opacity suffix.
SBDDataGraphNode *	getParent () const Returns the parent of the node.
SBDDataGraphNode *	getPreviousNode () const Returns the pointer to the previous node in the children of the node's parent.
SBDDataGraphNode *	getPreviousNode (SBDDataGraphNode::Type nodeType) const Returns the pointer to the previous node with type nodeType in the children of the node's parent.
SBDDataGraphNode *	getRoot () const Returns the root of the hierarchy the node belongs to.
bool	getSelected () const Returns whether the node is selected.
bool	getSelectionFlag () const Returns the selection flag.
virtual int	getSumOfFormalCharges () Returns the sum of formal charges.
virtual float	getSumOfPartialCharges () Returns the sum of partial charges.
SBDDataGraphNode *	getThisNode () const Returns the pointer to this node.
virtual unsigned int	getTransparency () const Returns the transparency.
virtual unsigned int	getTransparencySingleStep () const Returns the transparency single step.
virtual std::string	getTransparencySuffix () const Returns the transparency suffix.
virtual Type	getType () const Returns the type of the data graph node.
std::string	getTypeString (bool humanReadable=false) const Returns a string describing the type of the data graph node.
bool	getVisibilityFlag () const Returns the visibility flag.
bool	getVisible () const Returns whether the node is visible.
bool	hasMaterial () const Returns whether the node has a material (by itself, or inherited)
virtual bool	hasNode (SBDDataGraphNode::Type nodeType, bool selectedNodesOnly=false, const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const Returns whether the node has nodes based on a nodeType , a selection status and avisitPredicate , with or without dependencies.
virtual bool	hasNode (const SBNodePredicate & selectionPredicate=SBDDataGraphNode::All(), const SBNodePredicate & visitPredicate=SBDDataGraphNode::All(), bool includeDependencies=false) const Returns whether the node has nodes based on a selectionPredicate and avisitPredicate , with or without dependencies.
bool	hasOneOf (const SBNodeIndexer & nodeIndexer) const Returns true if and only if this node is one of the nodes of the nodeIndexer , or is the ancestor of one of them, or is a group that stores one of them.
virtual bool	hasOpacityRange () const Returns whether the node has the opacity range.
virtual bool	hasTransparencyRange () const Returns whether the node has the transparency range.
bool	isAtom () const Returns true when the node is an atom.
bool	isBallAndStick () const Returns true when the node is the default ball-and-stick visual model.
bool	isBond () const Returns true when the node is a bond.
bool	isCartoon () const Returns true when the node is the default cartoon visual model.
bool	isCreated () const Returns true if and only if the node is created.
bool	isDynamicalModel () const Returns true when the node is a dynamical model.
bool	isErased () const Returns true if and only if the node is erased.
bool	isGaussianSurface () const Returns true when the node is the default Gaussian surface visual model.
bool	isHighlighted () const Returns whether the node is highlighted.
bool	isIn (const SBDDataGraphNode * node) const Returns true if and only if this node is node , or descends from it, or belongs to a group stored innode .
bool	isIn (const SBNodeIndexer & nodeIndexer) const Returns true if and only if this node is one of the nodes of the nodeIndexer , or descends from one of them, or belongs to a group stored in one of the nodes of thenodeIndexer .
bool	isIn (SBPointerIndexer< SBDDataGraphNode > * nodePointerIndexer) const Returns true if and only if this node is one of the nodes of the nodePointerIndexer , or descends from one of them, or belongs to a group stored in of the nodes of thenodePointerIndexer .
bool	isInteractionModel () const Returns true when the node is a interaction model.
bool	isLicorice () const Returns true when the node is the default licorice visual model.
bool	isLight () const Returns true when the node is a light.
virtual bool	isLocked () const Returns whether the node is locked.
bool	isMesh () const Returns true when the node is a mesh.
bool	isModel () const Returns true when the node is a model.
bool	isOneOf (const SBNodeIndexer & nodeIndexer) const Returns true if and only if this node is one of the nodes of the nodeIndexer .
bool	isOneOf (SBPointerIndexer< SBDDataGraphNode > * nodePointerIndexer) const Returns true if and only if this node is one of the nodes of the nodePointerIndexer .
bool	isPropertyModel () const Returns true when the node is a property model.
bool	isRibbon () const Returns true when the node is the default ribbon visual model.
bool	isSelected () const Returns whether the node is selected.
virtual bool	isSerializable () const Returns true when the class is serializable.
bool	isSimulator () const Returns true when the node is a simulator.
bool	isSolventAccessibleSurface () const Returns true when the node is the default solvent accessible surface visual model.
bool	isSolventExcludedSurface () const Returns true when the node is the default solvent excluded surface visual model.
bool	isStructuralModel () const Returns true when the node is a structural model.
bool	isStructuralNode () const Returns true when the node is a structural node.
bool	isTube () const Returns true when the node is the default tube visual model.
bool	isType (Type type) const Returns true when the type of the node corresponds to type .
bool	isVanDerWaals () const Returns true when the node is the default van der Waals visual model.
bool	isVisible () const Returns whether the node is visible.
bool	isVisualModel () const Returns true when the node is a visual model.
bool	ownsMaterial () const Returns whether the node owns a material.
virtual void	print (unsigned int offset=0) const Prints some debugging information.
virtual bool	removeChild (SBDDataGraphNode * node) Removes a child from the node.
bool	removeMaterial () Removes the material.
void	removeMaterialsFromDescendants () Removes materials from all nodes that descend from this node, but it does not remove the material from the node itself.
virtual void	serialize (SBCSerializer * serializer, const SBNodeIndexer & nodeIndexer, const SBVersionNumber & sdkVersionNumber=SB_SDK_VERSION_NUMBER, const SBVersionNumber & classVersionNumber=SBVersionNumber(1, 0, 0)) const Serializes the node.
void	setHighlightingFlag (bool flag) Sets the highlighting flag.
virtual void	setLockedFlag (bool flag) Sets the locked flag.
virtual void	setName (const std::string & name) Sets the name of the node.
virtual void	setOpacity (unsigned int opacity) Sets the opacity.
void	setSelectionFlag (bool flag) Sets the selection flag.
virtual void	setTransparency (unsigned int transparency) Sets the transparency.
void	setVisibilityFlag (bool flag) Sets the visibility flag.
virtual void	unserialize (SBCSerializer * serializer, const SBNodeIndexer & nodeIndexer, const SBVersionNumber & sdkVersionNumber=SB_SDK_VERSION_NUMBER, const SBVersionNumber & classVersionNumber=SBVersionNumber(1, 0, 0)) Unserializes the node.

Public Functions inherited from SBCReferenceTarget

See SBCReferenceTarget

Type	Name
	SBCReferenceTarget ()
unsigned int	getMemoryFootprint () const
void	printReferencesToOwners () const
virtual	~SBCReferenceTarget ()

Public Static Functions inherited from SBMStructuralModelNode

See SBMStructuralModelNode

Type	Name
void	forEachStructuralNodeInSelection (std::vector< SBMStructuralModelNode * > & selection, void(*)(SBMStructuralModelNode *node) action)
void	forEachStructuralNodeInSelection (std::vector< SBMStructuralModelNode * > & selection, SBCClass * object, void(SBCClass::*)(SBMStructuralModelNode *node) action)

Public Static Functions inherited from SBDDataGraphNode

See SBDDataGraphNode

Type	Name
bool	canAddMaterial (SBDDataGraphNode::Type nodeType) Returns whether can add a material to a node of type nodeType .
void	clone (const SBNodeIndexer & sourceNodeIndexer, SBNodeIndexer & destinationNodeIndexer) Clones the nodes in sourceNodeIndexer (treated as a whole) and places the clones indestinationNodeIndexer .
void	forEachNodeInSelection (SBNodeIndexer & nodeIndexer, void(*)(SBDDataGraphNode *node) action) Performs an action for each node in a selection.
void	forEachNodeInSelection (SBNodeIndexer & nodeIndexer, SBCClass * object, void(SBCClass::*)(SBDDataGraphNode *node) action) Performs an action for each node in a selection.
SBDDataGraphNode *	getNode (unsigned int nodeIndex) Returns the unique node corresponding to the node index nodeIndex .
std::string	getTypeString (Type type, bool humanReadable=false) Returns a string describing the type of the data graph node.

Protected Attributes inherited from SBCReferenceTarget

See SBCReferenceTarget

Type	Name
SBCReferenceTargetData *	dataPointer

Protected Functions inherited from SBMStructuralModelNodeGroup

See SBMStructuralModelNodeGroup

Type	Name
	SBMStructuralModelNodeGroup (SBMStructuralModelNodeGroupData * dataPointer) Builds a base object.

Protected Functions inherited from SBMStructuralModelNode

See SBMStructuralModelNode

Type	Name
	SBMStructuralModelNode () Builds a structural model node.
	SBMStructuralModelNode (SBMStructuralModelNodeData * dataPointer) Builds a structural model node.

Protected Functions inherited from SBMModelNode

See SBMModelNode

Type	Name
	SBMModelNode () Builds a base object.
	SBMModelNode (SBMModelNodeData * dataPointer) Builds a base object.
virtual	~SBMModelNode ()

Protected Functions inherited from SBDDataGraphNode

See SBDDataGraphNode

Type	Name
	SBDDataGraphNode () Builds a data graph node.
	SBDDataGraphNode (SBDDataGraphNodeData * dataPointer) Builds a data graph node.
virtual	~SBDDataGraphNode () Destroys the node.

Protected Functions inherited from SBCReferenceTarget

See SBCReferenceTarget

Type	Name
	SBCReferenceTarget (SBCReferenceTargetData * dataPointer)
void	removeAllReferenceOwners ()

Detailed Description

This class describes a residue side chain.

Short name: SBSideChain

Public Functions Documentation

function SBMStructuralModelNodeSideChain [1/2]

SBMStructuralModelNodeSideChain::SBMStructuralModelNodeSideChain () 

---

function SBMStructuralModelNodeSideChain [2/2]

SBMStructuralModelNodeSideChain::SBMStructuralModelNodeSideChain (
    const std::string & n
) 

---

function SB_DECLARE_DATA

SBMStructuralModelNodeSideChain::SB_DECLARE_DATA (
    SBMStructuralModelNodeSideChain
) 

---

function addChild

Adds a child to the side chain.

virtual bool SBMStructuralModelNodeSideChain::addChild (
    SBNode * node,
    SBNode * nextNode=nullptr
) override

Implements SBMStructuralModelNodeGroup::addChild

---

function canAddChildType

Returns whether this node can add a node with type nodeType as a child.

virtual bool SBMStructuralModelNodeSideChain::canAddChildType (
    SBNode::Type nodeType
) override const

Implements SBMStructuralModelNodeGroup::canAddChildType

---

function canHaveDescendantType

Returns whether this node can have a node with type nodeType as a descendant.

virtual bool SBMStructuralModelNodeSideChain::canHaveDescendantType (
    SBNode::Type nodeType
) override const

Implements SBMStructuralModelNodeGroup::canHaveDescendantType

---

function clone

Returns a copy of the node and its descendants.

virtual SBMStructuralModelNodeSideChain * SBMStructuralModelNodeSideChain::clone () override

Implements SBMStructuralModelNodeGroup::clone

---

function getBetaCarbon

Returns the beta carbon of an amino acid side chain.

SBAtom * SBMStructuralModelNodeSideChain::getBetaCarbon () 

---

function getDeltaAtom

Returns the delta atom of an amino acid side chain.

SBAtom * SBMStructuralModelNodeSideChain::getDeltaAtom () 

---

function getEpsilonAtom

Returns the epsilon atom of an amino acid side chain.

SBAtom * SBMStructuralModelNodeSideChain::getEpsilonAtom () 

---

function getEtaAtom

Returns the eta atom of an amino acid side chain.

SBAtom * SBMStructuralModelNodeSideChain::getEtaAtom () 

---

function getGammaAtom

Returns the gamma atom of an amino acid side chain.

SBAtom * SBMStructuralModelNodeSideChain::getGammaAtom () 

---

function getType

Returns the node type (returns SBNode::SideChain )

virtual SBDDataGraphNode::Type SBMStructuralModelNodeSideChain::getType () override const

Implements SBMStructuralModelNodeGroup::getType

---

function getZetaAtom

Returns the zeta atom of an amino acid side chain.

SBAtom * SBMStructuralModelNodeSideChain::getZetaAtom () 

---

function removeChild

Removes a child from the side chain.

virtual bool SBMStructuralModelNodeSideChain::removeChild (
    SBNode * node
) override

Implements SBMStructuralModelNodeGroup::removeChild

---

function ~SBMStructuralModelNodeSideChain

virtual SBMStructuralModelNodeSideChain::~SBMStructuralModelNodeSideChain () 

---